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I now have comprehensive material to build a thorough clinical/exam-focused HIV/AIDS guide. Let me compile it all.

HIV/AIDS - Clinical & Exam-Focused Guide

1. Virology - The Virus Itself

Classification:
  • Family: Retroviridae, Genus: Lentivirus
  • Enveloped, (+) single-stranded RNA virus (diploid genome - carries 2 copies)
  • Two types: HIV-1 (global, more virulent) and HIV-2 (West Africa, less pathogenic, lower transmission)
Key Structural Genes (Exam High-Yield):
GeneProductFunctionDrug Target?
gagp17 (matrix), p24 (capsid), p7 (nucleocapsid), p6Virion structure and morphogenesisp24 used as diagnostic marker
polProtease, Reverse Transcriptase (RT), Integrase, RNase HReplication enzymesYES - all 3 enzymes are drug targets
envgp120 (surface), gp41 (transmembrane)Cell entry via CD4/coreceptor bindingYES (entry inhibitors)
tatTrans-Activator of TranscriptionTranscriptional activation of HIV genes-
revRegulator of ExpressionExports unspliced viral RNA from nucleus-
nefNegative Regulatory FactorDownregulates MHC-I and CD4; increases virion infectivity-
vifViral Infectivity FactorEvades APOBEC innate defense-
vpuViral Protein UDegrades CD4; counteracts tetherin-
vprViral Protein RCell cycle arrest-
  • Goldman-Cecil Medicine 22e, p. 3687

2. Replication Cycle (Step-by-Step)

  1. Attachment: gp120 binds CD4 receptor on T-helper cells/macrophages
  2. Co-receptor binding: gp120 then binds CCR5 (macrophage-tropic, M-tropic; early infection) or CXCR4 (T-cell-tropic; late infection) - critical step for membrane fusion
  3. Fusion: gp41 mediates fusion of viral and cell membranes - target of fusion inhibitors (enfuvirtide)
  4. Reverse transcription: RT converts viral RNA → double-stranded DNA (error-prone → generates high genetic diversity and resistance)
  5. Integration: Integrase incorporates HIV DNA (proviral DNA) into host genome - target of integrase inhibitors (dolutegravir, raltegravir)
  6. Transcription: Tat protein activates transcription of viral genes using host machinery
  7. Translation & Assembly: Viral proteins made; Gag/Pol polyprotein assembled at cell membrane
  8. Budding & Maturation: Protease cleaves polyprotein into functional units - target of protease inhibitors (ritonavir, lopinavir)
Key exam point: Rapid error-prone replication (~10^9 new virions/day) generates viral diversity; variants with resistance mutations to individual antiretroviral agents already preexist before treatment begins.
  • Goldman-Cecil Medicine 22e, p. 3687

3. Immunopathogenesis

Primary target cells: CD4+ T lymphocytes and monocytes/macrophages
Mechanisms of CD4+ T-cell depletion:
  1. Direct cytopathic effect - HIV replication kills infected CD4+ T cells
  2. Syncytia formation - HIV Env gp120 induces fusion of uninfected CD4+ T cells → apoptosis of uninfected cells (bystander killing)
  3. Immune exhaustion - Persistent viral antigen leads to T-cell anergy
  4. Impaired thymopoiesis - Reduced naive T-cell production over time
Note: HIV is highly cytopathic to CD4+ T lymphocytes but not to monocytes/macrophages - macrophages act as a reservoir.
  • Sherris & Ryan's Medical Microbiology, 8e, p. 288; Goldman-Cecil Medicine 22e, p. 3692
Elite Controllers (<1% of patients): Spontaneously suppress viremia without ART. Associated with HLA-B*27 and HLA-B*57 alleles. Still at risk for cardiovascular disease from chronic immune activation.

4. Natural History & CD4 Count Thresholds

Primary HIV Infection  →  Clinical Latency  →  AIDS
(acute retroviral       (virus replicating      (CD4 < 200 cells/μL
syndrome, 2-4 wk)      high-level; CD4 ↓)      or AIDS-defining illness)

CD4 Count - Opportunistic Infection Thresholds (HIGH-YIELD TABLE)

CD4 Count (cells/μL)Opportunistic Infection / Risk
< 500TB reactivation (can occur at any CD4), oral thrush
< 200Pneumocystis jirovecii pneumonia (PCP) - AIDS-defining; start TMP-SMX prophylaxis
< 100Toxoplasma gondii encephalitis, Cryptococcus neoformans meningitis
< 50Mycobacterium avium complex (MAC), CMV retinitis, Aspergillus
  • Goldman-Cecil Medicine 22e, p. 3692

5. Clinical Stages

Stage 1 - Acute HIV (Primary Infection)

  • Occurs 2-4 weeks after exposure
  • Mononucleosis-like syndrome: fever, lymphadenopathy, pharyngitis, rash, myalgia, headache
  • High viral load; CD4 may transiently drop
  • Window period: p24 Ag detectable at ~2 weeks; antibodies appear later

Stage 2 - Clinical Latency (Chronic HIV)

  • Asymptomatic or mild symptoms (e.g., persistent generalized lymphadenopathy in 50-70%)
  • Virus actively replicating; CD4 declining ~50-100 cells/μL per year
  • Can last 10+ years untreated

Stage 3 - AIDS

  • CD4 < 200 cells/μL OR presence of an AIDS-defining illness
  • Constitutional symptoms: weight loss, night sweats, chronic diarrhea
  • Opportunistic infections and AIDS-defining neoplasms

6. AIDS-Defining Opportunistic Infections

Fungi

PathogenPresentationTreatmentProphylaxis
Pneumocystis jiroveciiDiffuse interstitial pneumonia (PCP), dry cough, hypoxiaTMP-SMX; pentamidineTMP-SMX (CD4 <200)
Cryptococcus neoformansMeningitis (insidious onset, headache, fever)Amphotericin B + flucytosine → fluconazoleFluconazole maintenance
Candida albicansOral thrush, esophagitisFluconazoleFluconazole
Histoplasma capsulatumExtrapulmonary disseminated diseaseAmphotericin B, itraconazoleItraconazole

Parasites

PathogenPresentationTreatmentProphylaxis
Toxoplasma gondiiEncephalitis: ring-enhancing brain lesions, altered mental status, seizures (CD4 <100)Pyrimethamine + sulfadiazine + leucovorinTMP-SMX
CryptosporidiumChronic, profuse watery diarrheaART (main treatment), nitazoxanide-
IsosporaChronic diarrheaTMP-SMXTMP-SMX

Viruses

PathogenPresentation
CMVRetinitis (CD4 <50), colitis, encephalitis, polyradiculopathy
JC virus (PML)Progressive multifocal leukoencephalopathy - focal neuro deficits over weeks
EBVPrimary CNS lymphoma (ring-enhancing lesion, but no fever - vs. toxo)
HHV-8Kaposi sarcoma (skin, mucous membranes, GI)

Bacteria

PathogenNotes
M. tuberculosisReactivation risk ~20%/year when CD4 <100 without ART
M. avium complex (MAC)Disseminated disease, CD4 <50; fever, wasting, night sweats
Streptococcus pneumoniaeIncreased invasive disease (humoral immune defect)
  • Jawetz Melnick & Adelbergs Medical Microbiology 28e, p. 3862-3882; Goldman-Cecil Medicine 22e, p. 3692-3693

7. Nervous System Complications

ConditionFeatures
HIV encephalopathy / AIDS dementia complexCognitive slowing, short-term memory loss, difficulty with daily activities
Cerebral toxoplasmosisMultiple ring-enhancing lesions; responds to empiric treatment
Cryptococcal meningitisIndia ink positive CSF; latex agglutination for antigen
PML (JC virus)White matter lesions; no enhancement
CNS lymphoma (EBV-driven)Single ring-enhancing lesion; positive EBV PCR in CSF
CMV encephalitis/polyradiculopathyCD4 <50

8. Antiretroviral Therapy (ART)

Drug Classes

ClassMechanismKey Drugs
NRTI (Nucleoside/Nucleotide RT Inhibitors)False substrate for RT → chain terminationTenofovir (TDF/TAF), emtricitabine (FTC), abacavir (ABC), lamivudine (3TC), zidovudine (AZT)
NNRTI (Non-Nucleoside RT Inhibitors)Allosteric binding to RT → conformational changeEfavirenz, nevirapine, rilpivirine, doravirine
PI (Protease Inhibitors)Block protease → immature non-infectious virionsRitonavir, lopinavir, darunavir, atazanavir (often boosted with ritonavir or cobicistat)
INSTI (Integrase Strand Transfer Inhibitors)Block integration of HIV DNA into host genomeDolutegravir (DTG), bictegravir (BIC), raltegravir, elvitegravir
Entry inhibitorsBlock CCR5 co-receptor (maraviroc) or gp41 fusion (enfuvirtide)Maraviroc, enfuvirtide

When to Start ART

  • Recommended in all HIV-infected individuals, regardless of CD4 count
  • Start as soon as possible after diagnosis
  • For opportunistic infections: generally start within 2 weeks; exceptions:
    • TB co-infection (CD4 <50): Start ART within 2 weeks of TB treatment
    • TB co-infection (CD4 >50): Can delay up to 8 weeks
    • Cryptococcal meningitis: Delay ART 4-6 weeks after antifungal therapy (IRIS risk)

Treatment Goals

  • Viral load suppressed to undetectable (<20 copies/mL)
  • CD4 count recovery (normalization expected with adherence)
  • Prevention of opportunistic infections

Standard First-Line Regimen

Typically 2 NRTIs + 1 INSTI (e.g., tenofovir + emtricitabine + dolutegravir - "TDF/FTC/DTG")
  • Goldman-Cecil Medicine 22e, p. 3696; Goldman-Cecil Medicine 22e, p. 3692

9. PEP and PrEP

StrategyIndicationRegimen
PrEP (Pre-Exposure Prophylaxis)High-risk HIV-negative individualsTDF/FTC (Truvada) or TAF/FTC daily; injectable cabotegravir monthly
PEP (Post-Exposure Prophylaxis)Within 72 hours of potential HIV exposure3-drug ART for 28 days

10. Diagnosis

TestWhen / What It DetectsNotes
4th-generation HIV Ag/Ab combo testDetects p24 antigen + HIV-1/2 antibodiesFirst-line screening; detects infection ~2-3 weeks post-exposure
HIV-1/2 antibody differentiationConfirms positive screening resultDistinguishes HIV-1 vs. HIV-2
HIV RNA (viral load)Confirms acute HIV; monitors treatmentDetects at ~10 days (earliest); used for monitoring
CD4 countStaging; guides prophylaxis decisionsNot for screening
HIV resistance testing (genotype)Before starting ARTDocuments baseline mutations

11. IRIS - Immune Reconstitution Inflammatory Syndrome

  • Occurs when ART rapidly suppresses viral load in someone with advanced disease (CD4 <100)
  • Exaggerated inflammatory response to previously subclinical opportunistic pathogens
  • Classic triggers: TB, MAC, CMV, Cryptococcus
  • Presentation: paradoxical worsening of OI symptoms after starting ART
  • Management: Continue ART; NSAIDs or corticosteroids for severe cases; delay ART start in cryptococcal meningitis

12. Transmission

RouteNotes
Sexual (unprotected)Most common globally; M-tropic (CCR5) strains transmitted preferentially
Blood (sharing needles, transfusion)-
Vertical (mother-to-child)Antepartum, intrapartum, or via breastfeeding; ART prevents MTCT
U = U (Undetectable = Untransmittable): A person with a fully suppressed viral load on ART cannot transmit HIV sexually.

13. Quick-Reference: Exam Favorites

High-Yield FactAnswer
HIV receptorCD4 (primary) + CCR5 or CXCR4 (co-receptor)
AIDS definitionCD4 <200 OR AIDS-defining illness
PCP prophylaxis thresholdCD4 <200 (TMP-SMX)
Toxo/Crypto thresholdCD4 <100
CMV/MAC thresholdCD4 <50
Ring-enhancing lesion + fever →Cerebral toxoplasmosis (first)
Ring-enhancing lesion + EBV PCR+ →CNS lymphoma
HIV gene encoding RT, Protease, Integrasepol
HIV surface glycoprotein (binds CD4)gp120
HIV fusion proteingp41
Best prognostic markerViral load (activity) + CD4 count (immune reserve)
First-line ART backbone2 NRTIs + INSTI
Delay ART if OI =Cryptococcal meningitis (4-6 weeks)
Elite controllers HLA typeHLA-B*27, HLA-B*57

Sources:
  • Goldman-Cecil Medicine International Edition, 22e
  • Jawetz, Melnick & Adelberg's Medical Microbiology, 28e
  • Sherris & Ryan's Medical Microbiology, 8e
  • Harrison's Principles of Internal Medicine, 22e (2025)
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