I now have comprehensive material to build a thorough clinical/exam-focused HIV/AIDS guide. Let me compile it all.
HIV/AIDS - Clinical & Exam-Focused Guide
1. Virology - The Virus Itself
Classification:
- Family: Retroviridae, Genus: Lentivirus
- Enveloped, (+) single-stranded RNA virus (diploid genome - carries 2 copies)
- Two types: HIV-1 (global, more virulent) and HIV-2 (West Africa, less pathogenic, lower transmission)
Key Structural Genes (Exam High-Yield):
| Gene | Product | Function | Drug Target? |
|---|
| gag | p17 (matrix), p24 (capsid), p7 (nucleocapsid), p6 | Virion structure and morphogenesis | p24 used as diagnostic marker |
| pol | Protease, Reverse Transcriptase (RT), Integrase, RNase H | Replication enzymes | YES - all 3 enzymes are drug targets |
| env | gp120 (surface), gp41 (transmembrane) | Cell entry via CD4/coreceptor binding | YES (entry inhibitors) |
| tat | Trans-Activator of Transcription | Transcriptional activation of HIV genes | - |
| rev | Regulator of Expression | Exports unspliced viral RNA from nucleus | - |
| nef | Negative Regulatory Factor | Downregulates MHC-I and CD4; increases virion infectivity | - |
| vif | Viral Infectivity Factor | Evades APOBEC innate defense | - |
| vpu | Viral Protein U | Degrades CD4; counteracts tetherin | - |
| vpr | Viral Protein R | Cell cycle arrest | - |
- Goldman-Cecil Medicine 22e, p. 3687
2. Replication Cycle (Step-by-Step)
- Attachment: gp120 binds CD4 receptor on T-helper cells/macrophages
- Co-receptor binding: gp120 then binds CCR5 (macrophage-tropic, M-tropic; early infection) or CXCR4 (T-cell-tropic; late infection) - critical step for membrane fusion
- Fusion: gp41 mediates fusion of viral and cell membranes - target of fusion inhibitors (enfuvirtide)
- Reverse transcription: RT converts viral RNA → double-stranded DNA (error-prone → generates high genetic diversity and resistance)
- Integration: Integrase incorporates HIV DNA (proviral DNA) into host genome - target of integrase inhibitors (dolutegravir, raltegravir)
- Transcription: Tat protein activates transcription of viral genes using host machinery
- Translation & Assembly: Viral proteins made; Gag/Pol polyprotein assembled at cell membrane
- Budding & Maturation: Protease cleaves polyprotein into functional units - target of protease inhibitors (ritonavir, lopinavir)
Key exam point: Rapid error-prone replication (~10^9 new virions/day) generates viral diversity; variants with resistance mutations to individual antiretroviral agents already preexist before treatment begins.
- Goldman-Cecil Medicine 22e, p. 3687
3. Immunopathogenesis
Primary target cells: CD4+ T lymphocytes and monocytes/macrophages
Mechanisms of CD4+ T-cell depletion:
- Direct cytopathic effect - HIV replication kills infected CD4+ T cells
- Syncytia formation - HIV Env gp120 induces fusion of uninfected CD4+ T cells → apoptosis of uninfected cells (bystander killing)
- Immune exhaustion - Persistent viral antigen leads to T-cell anergy
- Impaired thymopoiesis - Reduced naive T-cell production over time
Note: HIV is highly cytopathic to CD4+ T lymphocytes but not to monocytes/macrophages - macrophages act as a reservoir.
- Sherris & Ryan's Medical Microbiology, 8e, p. 288; Goldman-Cecil Medicine 22e, p. 3692
Elite Controllers (<1% of patients): Spontaneously suppress viremia without ART. Associated with HLA-B*27 and HLA-B*57 alleles. Still at risk for cardiovascular disease from chronic immune activation.
4. Natural History & CD4 Count Thresholds
Primary HIV Infection → Clinical Latency → AIDS
(acute retroviral (virus replicating (CD4 < 200 cells/μL
syndrome, 2-4 wk) high-level; CD4 ↓) or AIDS-defining illness)
CD4 Count - Opportunistic Infection Thresholds (HIGH-YIELD TABLE)
| CD4 Count (cells/μL) | Opportunistic Infection / Risk |
|---|
| < 500 | TB reactivation (can occur at any CD4), oral thrush |
| < 200 | Pneumocystis jirovecii pneumonia (PCP) - AIDS-defining; start TMP-SMX prophylaxis |
| < 100 | Toxoplasma gondii encephalitis, Cryptococcus neoformans meningitis |
| < 50 | Mycobacterium avium complex (MAC), CMV retinitis, Aspergillus |
- Goldman-Cecil Medicine 22e, p. 3692
5. Clinical Stages
Stage 1 - Acute HIV (Primary Infection)
- Occurs 2-4 weeks after exposure
- Mononucleosis-like syndrome: fever, lymphadenopathy, pharyngitis, rash, myalgia, headache
- High viral load; CD4 may transiently drop
- Window period: p24 Ag detectable at ~2 weeks; antibodies appear later
Stage 2 - Clinical Latency (Chronic HIV)
- Asymptomatic or mild symptoms (e.g., persistent generalized lymphadenopathy in 50-70%)
- Virus actively replicating; CD4 declining ~50-100 cells/μL per year
- Can last 10+ years untreated
Stage 3 - AIDS
- CD4 < 200 cells/μL OR presence of an AIDS-defining illness
- Constitutional symptoms: weight loss, night sweats, chronic diarrhea
- Opportunistic infections and AIDS-defining neoplasms
6. AIDS-Defining Opportunistic Infections
Fungi
| Pathogen | Presentation | Treatment | Prophylaxis |
|---|
| Pneumocystis jirovecii | Diffuse interstitial pneumonia (PCP), dry cough, hypoxia | TMP-SMX; pentamidine | TMP-SMX (CD4 <200) |
| Cryptococcus neoformans | Meningitis (insidious onset, headache, fever) | Amphotericin B + flucytosine → fluconazole | Fluconazole maintenance |
| Candida albicans | Oral thrush, esophagitis | Fluconazole | Fluconazole |
| Histoplasma capsulatum | Extrapulmonary disseminated disease | Amphotericin B, itraconazole | Itraconazole |
Parasites
| Pathogen | Presentation | Treatment | Prophylaxis |
|---|
| Toxoplasma gondii | Encephalitis: ring-enhancing brain lesions, altered mental status, seizures (CD4 <100) | Pyrimethamine + sulfadiazine + leucovorin | TMP-SMX |
| Cryptosporidium | Chronic, profuse watery diarrhea | ART (main treatment), nitazoxanide | - |
| Isospora | Chronic diarrhea | TMP-SMX | TMP-SMX |
Viruses
| Pathogen | Presentation |
|---|
| CMV | Retinitis (CD4 <50), colitis, encephalitis, polyradiculopathy |
| JC virus (PML) | Progressive multifocal leukoencephalopathy - focal neuro deficits over weeks |
| EBV | Primary CNS lymphoma (ring-enhancing lesion, but no fever - vs. toxo) |
| HHV-8 | Kaposi sarcoma (skin, mucous membranes, GI) |
Bacteria
| Pathogen | Notes |
|---|
| M. tuberculosis | Reactivation risk ~20%/year when CD4 <100 without ART |
| M. avium complex (MAC) | Disseminated disease, CD4 <50; fever, wasting, night sweats |
| Streptococcus pneumoniae | Increased invasive disease (humoral immune defect) |
- Jawetz Melnick & Adelbergs Medical Microbiology 28e, p. 3862-3882; Goldman-Cecil Medicine 22e, p. 3692-3693
7. Nervous System Complications
| Condition | Features |
|---|
| HIV encephalopathy / AIDS dementia complex | Cognitive slowing, short-term memory loss, difficulty with daily activities |
| Cerebral toxoplasmosis | Multiple ring-enhancing lesions; responds to empiric treatment |
| Cryptococcal meningitis | India ink positive CSF; latex agglutination for antigen |
| PML (JC virus) | White matter lesions; no enhancement |
| CNS lymphoma (EBV-driven) | Single ring-enhancing lesion; positive EBV PCR in CSF |
| CMV encephalitis/polyradiculopathy | CD4 <50 |
8. Antiretroviral Therapy (ART)
Drug Classes
| Class | Mechanism | Key Drugs |
|---|
| NRTI (Nucleoside/Nucleotide RT Inhibitors) | False substrate for RT → chain termination | Tenofovir (TDF/TAF), emtricitabine (FTC), abacavir (ABC), lamivudine (3TC), zidovudine (AZT) |
| NNRTI (Non-Nucleoside RT Inhibitors) | Allosteric binding to RT → conformational change | Efavirenz, nevirapine, rilpivirine, doravirine |
| PI (Protease Inhibitors) | Block protease → immature non-infectious virions | Ritonavir, lopinavir, darunavir, atazanavir (often boosted with ritonavir or cobicistat) |
| INSTI (Integrase Strand Transfer Inhibitors) | Block integration of HIV DNA into host genome | Dolutegravir (DTG), bictegravir (BIC), raltegravir, elvitegravir |
| Entry inhibitors | Block CCR5 co-receptor (maraviroc) or gp41 fusion (enfuvirtide) | Maraviroc, enfuvirtide |
When to Start ART
- Recommended in all HIV-infected individuals, regardless of CD4 count
- Start as soon as possible after diagnosis
- For opportunistic infections: generally start within 2 weeks; exceptions:
- TB co-infection (CD4 <50): Start ART within 2 weeks of TB treatment
- TB co-infection (CD4 >50): Can delay up to 8 weeks
- Cryptococcal meningitis: Delay ART 4-6 weeks after antifungal therapy (IRIS risk)
Treatment Goals
- Viral load suppressed to undetectable (<20 copies/mL)
- CD4 count recovery (normalization expected with adherence)
- Prevention of opportunistic infections
Standard First-Line Regimen
Typically 2 NRTIs + 1 INSTI (e.g., tenofovir + emtricitabine + dolutegravir - "TDF/FTC/DTG")
- Goldman-Cecil Medicine 22e, p. 3696; Goldman-Cecil Medicine 22e, p. 3692
9. PEP and PrEP
| Strategy | Indication | Regimen |
|---|
| PrEP (Pre-Exposure Prophylaxis) | High-risk HIV-negative individuals | TDF/FTC (Truvada) or TAF/FTC daily; injectable cabotegravir monthly |
| PEP (Post-Exposure Prophylaxis) | Within 72 hours of potential HIV exposure | 3-drug ART for 28 days |
10. Diagnosis
| Test | When / What It Detects | Notes |
|---|
| 4th-generation HIV Ag/Ab combo test | Detects p24 antigen + HIV-1/2 antibodies | First-line screening; detects infection ~2-3 weeks post-exposure |
| HIV-1/2 antibody differentiation | Confirms positive screening result | Distinguishes HIV-1 vs. HIV-2 |
| HIV RNA (viral load) | Confirms acute HIV; monitors treatment | Detects at ~10 days (earliest); used for monitoring |
| CD4 count | Staging; guides prophylaxis decisions | Not for screening |
| HIV resistance testing (genotype) | Before starting ART | Documents baseline mutations |
11. IRIS - Immune Reconstitution Inflammatory Syndrome
- Occurs when ART rapidly suppresses viral load in someone with advanced disease (CD4 <100)
- Exaggerated inflammatory response to previously subclinical opportunistic pathogens
- Classic triggers: TB, MAC, CMV, Cryptococcus
- Presentation: paradoxical worsening of OI symptoms after starting ART
- Management: Continue ART; NSAIDs or corticosteroids for severe cases; delay ART start in cryptococcal meningitis
12. Transmission
| Route | Notes |
|---|
| Sexual (unprotected) | Most common globally; M-tropic (CCR5) strains transmitted preferentially |
| Blood (sharing needles, transfusion) | - |
| Vertical (mother-to-child) | Antepartum, intrapartum, or via breastfeeding; ART prevents MTCT |
U = U (Undetectable = Untransmittable): A person with a fully suppressed viral load on ART cannot transmit HIV sexually.
13. Quick-Reference: Exam Favorites
| High-Yield Fact | Answer |
|---|
| HIV receptor | CD4 (primary) + CCR5 or CXCR4 (co-receptor) |
| AIDS definition | CD4 <200 OR AIDS-defining illness |
| PCP prophylaxis threshold | CD4 <200 (TMP-SMX) |
| Toxo/Crypto threshold | CD4 <100 |
| CMV/MAC threshold | CD4 <50 |
| Ring-enhancing lesion + fever → | Cerebral toxoplasmosis (first) |
| Ring-enhancing lesion + EBV PCR+ → | CNS lymphoma |
| HIV gene encoding RT, Protease, Integrase | pol |
| HIV surface glycoprotein (binds CD4) | gp120 |
| HIV fusion protein | gp41 |
| Best prognostic marker | Viral load (activity) + CD4 count (immune reserve) |
| First-line ART backbone | 2 NRTIs + INSTI |
| Delay ART if OI = | Cryptococcal meningitis (4-6 weeks) |
| Elite controllers HLA type | HLA-B*27, HLA-B*57 |
Sources:
- Goldman-Cecil Medicine International Edition, 22e
- Jawetz, Melnick & Adelberg's Medical Microbiology, 28e
- Sherris & Ryan's Medical Microbiology, 8e
- Harrison's Principles of Internal Medicine, 22e (2025)