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multifactorial inheritance
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Make a one-page PDF revision note on multifactorial inheritance
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mkdir -p "/tmp/workspace/multifactorial-inheritance-pdf/src" "/tmp/workspace/multifactorial-inheritance-pdf/output" && python - <<'PY' from reportlab.lib.pagesizes import A4 from reportlab.lib import colors from reportlab.lib.styles import getSampleStyleSheet, ParagraphStyle from reportlab.lib.enums import TA_CENTER from reportlab.lib.units import mm from reportlab.platypus import SimpleDocTemplate, Paragraph, Spacer, Table, TableStyle, KeepTogether from reportlab.pdfbase.ttfonts import TTFont from reportlab.pdfbase import pdfmetrics from reportlab.lib.colors import HexColor from pypdf import PdfReader out='/tmp/workspace/multifactorial-inheritance-pdf/output/Multifactorial_Inheritance_Revision_Note.pdf' doc=SimpleDocTemplate(out, pagesize=A4, rightMargin=13*mm,leftMargin=13*mm,topMargin=11*mm,bottomMargin=10*mm) styles=getSampleStyleSheet() navy=HexColor('#14324A'); teal=HexColor('#0D7D78'); pale=HexColor('#EAF5F4'); gold=HexColor('#E7B64A'); ink=HexColor('#1E2933'); muted=HexColor('#52616B') styles.add(ParagraphStyle(name='TitleX', parent=styles['Title'], fontName='Helvetica-Bold', fontSize=18, leading=21, alignment=TA_CENTER, textColor=navy, spaceAfter=3)) styles.add(ParagraphStyle(name='SubX', parent=styles['Normal'], fontName='Helvetica', fontSize=8.3, leading=10, alignment=TA_CENTER, textColor=muted, spaceAfter=7)) styles.add(ParagraphStyle(name='HeadX', parent=styles['Heading2'], fontName='Helvetica-Bold', fontSize=9.5, leading=11, textColor=colors.white, spaceBefore=0, spaceAfter=3)) styles.add(ParagraphStyle(name='BodyX', parent=styles['BodyText'], fontName='Helvetica', fontSize=8.1, leading=10.1, textColor=ink, spaceAfter=2)) styles.add(ParagraphStyle(name='SmallX', parent=styles['BodyText'], fontName='Helvetica', fontSize=7.5, leading=9.1, textColor=ink, spaceAfter=1.5)) styles.add(ParagraphStyle(name='CalloutX', parent=styles['BodyText'], fontName='Helvetica-Bold', fontSize=8.2, leading=10.2, textColor=navy, spaceAfter=0)) def P(text, style='BodyX'): return Paragraph(text, styles[style]) def section(title, content, width): bar=Table([[P(title,'HeadX')]], colWidths=[width]) bar.setStyle(TableStyle([('BACKGROUND',(0,0),(-1,-1),teal),('LEFTPADDING',(0,0),(-1,-1),6),('RIGHTPADDING',(0,0),(-1,-1),5),('TOPPADDING',(0,0),(-1,-1),3),('BOTTOMPADDING',(0,0),(-1,-1),3)])) box=Table([[content]], colWidths=[width]) box.setStyle(TableStyle([('BACKGROUND',(0,0),(-1,-1),colors.white),('BOX',(0,0),(-1,-1),0.5,HexColor('#BBD8D5')),('LEFTPADDING',(0,0),(-1,-1),6),('RIGHTPADDING',(0,0),(-1,-1),6),('TOPPADDING',(0,0),(-1,-1),4),('BOTTOMPADDING',(0,0),(-1,-1),4)])) return [bar,box] usable=184*mm; gap=5*mm; col=(usable-gap)/2 story=[] story += [P('MULTIFACTORIAL INHERITANCE','TitleX'), P('Complex multigenic (polygenic) disorders | Robbins pathology revision sheet','SubX')] call=Table([[P('<b>CORE IDEA:</b> Disease occurs when multiple low-effect genetic variants interact with one another and with environmental factors. It does <b>not</b> follow a Mendelian pattern.','CalloutX')]],colWidths=[usable]) call.setStyle(TableStyle([('BACKGROUND',(0,0),(-1,-1),pale),('BOX',(0,0),(-1,-1),0.7,teal),('LEFTPADDING',(0,0),(-1,-1),8),('RIGHTPADDING',(0,0),(-1,-1),8),('TOPPADDING',(0,0),(-1,-1),5),('BOTTOMPADDING',(0,0),(-1,-1),5)])) story += [call,Spacer(1,5)] left=[]; right=[] for x in section('1. DEFINITION & GENETIC BASIS', [P('<b>Synonyms:</b> complex multigenic, polygenic, multifactorial disorders.'),P('<b>Polymorphism:</b> a genetic variant present in at least 1% of the population.'),P('<b>Common disease-common variant hypothesis:</b> common disease may result from coinheritance of several common polymorphisms, each with modest effect and low penetrance, plus environmental exposure.'),P('<b>Important:</b> variants contribute unequally. A few HLA alleles account for much of the genetic risk in type 1 diabetes.')],col): left.append(x) left.append(Spacer(1,5)) for x in section('2. KEY FEATURES', [P('• No dominant, recessive, or X-linked ratio.'),P('• Familial aggregation: risk is higher in relatives than in the general population.'),P('• Risk is greatest in first-degree relatives and falls as relatedness decreases.'),P('• Expression is modified substantially by environment.'),P('• Individual genes usually have small effects; <b>GWAS</b> can identify risk-associated loci, but often has limited value for predicting an individual patient’s outcome.')],col): left.append(x) left.append(Spacer(1,5)) for x in section('3. QUANTITATIVE VS THRESHOLD TRAITS', [P('<b>Quantitative traits</b> show continuous variation and a bell-shaped population distribution: height, weight, blood pressure, skin/eye/hair color, blood analytes.'),P('<b>Threshold traits:</b> total genetic + environmental “liability” is continuous, but disease appears only after a critical threshold is crossed. This explains familial clustering without Mendelian inheritance.')],col): left.append(x) for x in section('4. RECURRENCE-RISK CLUES', [P('Recurrence risk is higher when:'),P('• an affected relative is closely related<br/>• several family members are affected<br/>• the proband has severe or early-onset disease<br/>• the affected person is from the less commonly affected sex'),P('These clues support a high underlying liability in the family.')],col): right.append(x) right.append(Spacer(1,5)) for x in section('5. EXAMPLES', [P('<b>Congenital malformations</b><br/>• Cleft lip ± cleft palate<br/>• Neural tube defects<br/>• Some congenital heart defects<br/>• Pyloric stenosis and clubfoot'),P('<b>Common disorders</b><br/>• Type 2 diabetes mellitus<br/>• Essential hypertension<br/>• Atherosclerosis / ischemic heart disease<br/>• Obesity<br/>• Autoimmune disorders, e.g., type 1 diabetes')],col): right.append(x) right.append(Spacer(1,5)) for x in section('6. PREVENTION PEARL', [P('<b>Neural tube defects:</b> periconceptional folic acid substantially reduces incidence. This is the classic proof that identifying and modifying an environmental factor can prevent a multifactorial disorder.'),P('<b>Type 2 diabetes:</b> genetic risk is important, but diet and exercise can modify risk.')],col): right.append(x) cols=Table([[left,right]], colWidths=[col,col], hAlign='CENTER') cols.setStyle(TableStyle([('VALIGN',(0,0),(-1,-1),'TOP'),('LEFTPADDING',(0,0),(-1,-1),0),('RIGHTPADDING',(0,0),(-1,-1),0)])) story.append(cols) story.append(Spacer(1,5)) exam=Table([[P('<b>EXAM ANSWER IN ONE LINE:</b> Multifactorial inheritance is caused by the cumulative action of multiple low-effect genes and environmental factors, producing familial aggregation without a Mendelian inheritance pattern.','SmallX')]],colWidths=[usable]) exam.setStyle(TableStyle([('BACKGROUND',(0,0),(-1,-1),HexColor('#FFF7DF')),('BOX',(0,0),(-1,-1),0.6,gold),('LEFTPADDING',(0,0),(-1,-1),7),('RIGHTPADDING',(0,0),(-1,-1),7),('TOPPADDING',(0,0),(-1,-1),4),('BOTTOMPADDING',(0,0),(-1,-1),4)])) story += [exam, Spacer(1,4), P('Source: Robbins, Cotran & Kumar, Pathologic Basis of Disease, “Complex Multigenic Disorders” (p. 160) and “Causes of Anomalies” (p. 430).','SmallX')] doc.build(story) reader=PdfReader(out) assert len(reader.pages)==1, f'Expected one page, got {len(reader.pages)}' assert len(reader.pages[0].extract_text())>1000 print(out, 'pages=',len(reader.pages), 'bytes=',__import__('os').path.getsize(out)) PY
Multifactorial Inheritance Revision Note
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