Here are your complete Carbohydrates Biochemistry Notes, compiled from Lippincott Illustrated Reviews (8th ed) and Harper's Illustrated Biochemistry (32nd ed) - covering all topics found in Satyanarayana:
CARBOHYDRATES - BIOCHEMISTRY NOTES
Source: Lippincott Illustrated Reviews: Biochemistry, 8e & Harper's Illustrated Biochemistry, 32e
CHAPTER 1: INTRODUCTION & CLASSIFICATION
Definition
Carbohydrates are the most abundant organic molecules in nature. The empiric formula for simple carbohydrates is (CH₂O)n, where n ≥ 3, hence the name "hydrate of carbon."
Functions
- Primary energy source (4 kcal/g)
- Storage form of energy (glycogen in liver and muscle)
- Structural components (cell walls of bacteria, exoskeleton of insects, cellulose in plants)
- Cell membrane components - mediate intercellular communication
- Precursors for amino acids, fatty acids, and nucleotides
CHAPTER 2: CLASSIFICATION & STRUCTURE
A. Based on Number of Carbon Atoms
Fig 7.1 - Lippincott: Monosaccharides classified by carbon number
| Carbons | Name | Example |
|---|
| 3 | Trioses | Glyceraldehyde, Dihydroxyacetone |
| 4 | Tetroses | Erythrose |
| 5 | Pentoses | Ribose, Ribulose |
| 6 | Hexoses | Glucose, Fructose, Galactose |
| 7 | Heptoses | Sedoheptulose |
| 9 | Nonoses | Neuraminic acid |
B. Based on Carbonyl Group (Aldoses vs Ketoses)
- Aldoses - contain an aldehyde group (e.g., glyceraldehyde, glucose)
- Ketoses - contain a keto group (e.g., dihydroxyacetone, fructose)
C. Based on Size (Complexity)
| Type | Subunits | Examples |
|---|
| Monosaccharides | 1 unit | Glucose, Fructose, Galactose |
| Disaccharides | 2 units | Sucrose, Lactose, Maltose |
| Oligosaccharides | 3-10 units | Raffinose, Stachyose |
| Polysaccharides | >10 units | Starch, Glycogen, Cellulose |
D. Stereoisomerism
- Isomers - same formula, different structures. E.g., glucose, fructose, mannose, galactose all share C₆H₁₂O₆
- Epimers - differ at only ONE carbon (not the carbonyl carbon). E.g.:
- Glucose & galactose = C-4 epimers
- Glucose & mannose = C-2 epimers
- Enantiomers (D/L forms) - mirror images of each other. Nearly all sugars in humans are D-isomers
- Anomers (α/β forms) - differ at carbon 1 (the anomeric carbon). E.g., α-D-glucose vs β-D-glucose
E. Important Disaccharides
| Disaccharide | Components | Bond | Found in |
|---|
| Maltose | Glucose + Glucose | α(1→4) | Starch digestion |
| Lactose | Galactose + Glucose | β(1→4) | Milk |
| Sucrose | Glucose + Fructose | α,β(1→2) | Table sugar |
| Trehalose | Glucose + Glucose | α,α(1→1) | Insects, fungi |
F. Important Polysaccharides
| Polysaccharide | Source | Bonds | Notes |
|---|
| Starch (amylose) | Plants | α(1→4) | Unbranched |
| Starch (amylopectin) | Plants | α(1→4) + α(1→6) | Branched every 24-30 residues |
| Glycogen | Animals | α(1→4) + α(1→6) | Branched every 8-12 residues |
| Cellulose | Plants | β(1→4) | Humans cannot digest |
CHAPTER 3: DIGESTION & ABSORPTION OF CARBOHYDRATES
Digestion
Digestion is catalyzed by glycoside hydrolases (glycosidases). Final products: glucose, galactose, and fructose.
| Site | Enzyme | Substrate | Products |
|---|
| Mouth | Salivary α-amylase | Starch, glycogen | Dextrins, oligosaccharides |
| Stomach | - (acid inactivates amylase) | - | - |
| Small intestine (lumen) | Pancreatic α-amylase | Dextrins | Shorter oligosaccharides |
| Small intestine (brush border) | Sucrase | Sucrose | Glucose + Fructose |
| Lactase | Lactose | Glucose + Galactose |
| Maltase | Maltose | Glucose + Glucose |
| Isomaltase (α-dextrinase) | α(1→6) bonds | Glucose |
Key note: Humans lack β-glucosidase, so cellulose cannot be digested.
Absorption
- Glucose and galactose are absorbed by Na⁺-dependent active transport (SGLT-1 cotransporter) - secondary active transport
- Fructose is absorbed by facilitated diffusion via GLUT-5
- All three enter portal blood and are transported to liver
GLUT Transporters (Facilitated Diffusion)
| Transporter | Location | Notes |
|---|
| GLUT-1 | Most tissues (RBCs, brain) | Basal glucose uptake |
| GLUT-2 | Liver, pancreatic β cells, kidney | High Km - glucose sensor |
| GLUT-3 | Brain neurons | High affinity |
| GLUT-4 | Muscle, adipose | Insulin-stimulated |
| GLUT-5 | Small intestine | Fructose transporter |
CHAPTER 4: GLYCOLYSIS
Glycolysis = breakdown of glucose to pyruvate (aerobic) or lactate (anaerobic). Occurs in the cytosol of ALL cells.
Fig 8.9 - Lippincott: A) Glycolysis in metabolic context. B) Aerobic glycolysis. C) Anaerobic glycolysis
The 10 Steps of Glycolysis
PHASE 1: Energy Investment Phase (Reactions 1-5) - 2 ATP consumed
| Step | Reaction | Enzyme | Notes |
|---|
| 1 | Glucose → Glucose-6-phosphate | Hexokinase (all tissues) / Glucokinase (liver, β cells) | Irreversible; ATP used |
| 2 | Glucose-6-P → Fructose-6-P | Phosphoglucose isomerase | Reversible; aldose→ketose |
| 3 | Fructose-6-P → Fructose-1,6-bisphosphate | Phosphofructokinase-1 (PFK-1) | Rate-limiting step; irreversible |
| 4 | Fructose-1,6-bisP → DHAP + Glyceraldehyde-3-P | Aldolase | Reversible |
| 5 | DHAP → Glyceraldehyde-3-P | Triose phosphate isomerase | Reversible |
PHASE 2: Energy Payoff Phase (Reactions 6-10) - 4 ATP produced
| Step | Reaction | Enzyme | Notes |
|---|
| 6 | G3P → 1,3-bisphosphoglycerate | G3P dehydrogenase | NAD⁺ → NADH |
| 7 | 1,3-BPG → 3-phosphoglycerate | Phosphoglycerate kinase | ATP generated (substrate-level) |
| 8 | 3-PG → 2-phosphoglycerate | Phosphoglycerate mutase | Reversible |
| 9 | 2-PG → Phosphoenolpyruvate (PEP) | Enolase | Reversible |
| 10 | PEP → Pyruvate | Pyruvate kinase | Irreversible; ATP generated |
Three Irreversible (Regulated) Steps:
- Step 1 - Hexokinase/Glucokinase
- Step 3 - PFK-1 (rate-limiting step)
- Step 10 - Pyruvate kinase
Regulation of PFK-1 (Most Important Regulator)
| Activators | Inhibitors |
|---|
| AMP, ADP | ATP (high energy) |
| Fructose-2,6-bisphosphate (most potent) | Citrate |
| Pi | Low pH |
Fructose-2,6-bisphosphate is the most potent activator of PFK-1. It is formed by PFK-2, which is activated by insulin and inhibited by glucagon.
Energy Yield from Glycolysis
| Anaerobic | Aerobic |
|---|
| Net ATP | 2 ATP | 2 ATP (+ NADH for ETC) |
| NADH produced | 0 (net) | 2 NADH |
| End product | Lactate | Pyruvate → TCA |
Fate of Pyruvate
- Aerobic conditions → Pyruvate dehydrogenase complex → Acetyl-CoA → TCA cycle
- Anaerobic conditions → Lactate dehydrogenase (LDH) → Lactate (regenerates NAD⁺)
- Transamination → Alanine
- Carboxylation → Oxaloacetate (gluconeogenesis)
Hexokinase vs Glucokinase
| Property | Hexokinase (I-III) | Glucokinase (IV) |
|---|
| Location | Most tissues | Liver, β cells |
| Km for glucose | Low (~0.1 mM) | High (~10 mM) |
| Vmax | Low | High |
| Inhibited by G-6-P? | Yes | No |
| Induced by insulin? | No | Yes |
| Role | Housekeeping | Glucose sensor |
CHAPTER 5: CITRIC ACID (TCA) CYCLE / KREBS CYCLE
Location: Mitochondrial matrix
Harper's Fig 16-2: The citric acid cycle linked to the respiratory chain
Overview
- Acetyl-CoA (C₂) + Oxaloacetate (C₄) → Citrate (C₆)
- Per turn: 2 CO₂ released, oxaloacetate regenerated
- The cycle is amphibolic - both catabolic and anabolic
Steps of the TCA Cycle (8 Steps)
| Step | Reaction | Enzyme | Cofactor/Product |
|---|
| 1 | Oxaloacetate + Acetyl-CoA → Citrate | Citrate synthase | - |
| 2 | Citrate → Isocitrate (via cis-aconitate) | Aconitase | H₂O |
| 3 | Isocitrate → α-Ketoglutarate | Isocitrate dehydrogenase | NADH, CO₂ |
| 4 | α-Ketoglutarate → Succinyl-CoA | α-KG dehydrogenase | NADH, CO₂ |
| 5 | Succinyl-CoA → Succinate | Succinyl-CoA synthetase | GTP (substrate-level) |
| 6 | Succinate → Fumarate | Succinate dehydrogenase | FADH₂ |
| 7 | Fumarate → Malate | Fumarase | H₂O |
| 8 | Malate → Oxaloacetate | Malate dehydrogenase | NADH |
Energy Yield per Acetyl-CoA (per turn)
- 3 NADH × 2.5 ATP = 7.5 ATP
- 1 FADH₂ × 1.5 ATP = 1.5 ATP
- 1 GTP = 1 ATP
- Total: ~10 ATP per turn (Harper's)
Regulated Steps (Inhibited by high energy)
- Citrate synthase - inhibited by ATP, NADH, succinyl-CoA
- Isocitrate dehydrogenase - inhibited by ATP, NADH; activated by ADP
- α-KG dehydrogenase - inhibited by ATP, NADH, succinyl-CoA
Vitamins Required by TCA Cycle
| Vitamin | Coenzyme | Enzyme |
|---|
| Thiamine (B₁) | TPP | α-KG dehydrogenase |
| Riboflavin (B₂) | FAD | Succinate dehydrogenase |
| Niacin (B₃) | NAD⁺ | Isocitrate DH, α-KG DH, Malate DH |
| Pantothenic acid (B₅) | Coenzyme A | Succinyl-CoA synthetase |
CHAPTER 6: GLYCOGEN METABOLISM
Glycogen Structure
Fig 11.3 - Lippincott: Branched glycogen with α(1→4) and α(1→6) bonds
- Branched polysaccharide of α-D-glucose
- α(1→4) glycosidic bonds in linear chains
- α(1→6) bonds at branch points (every 8-12 residues)
- Stored in: Liver (~100g, up to 10% wet weight) and Muscle (~400g, 1-2% wet weight)
Glycogenesis (Glycogen Synthesis)
Location: Cytosol. Energy source: ATP and UTP
- Glucose → Glucose-6-P (Hexokinase/Glucokinase, ATP)
- Glucose-6-P → Glucose-1-P (Phosphoglucomutase)
- Glucose-1-P + UTP → UDP-glucose + PPi (UDP-glucosyl pyrophosphorylase)
- UDP-glucose → added to chain (Glycogen synthase, α[1→4] bonds)
- Branching enzyme transfers 6-7 glucosyl units to form α(1→6) branches
Key enzyme: Glycogen synthase - activated by glucose-6-P and insulin; inhibited by phosphorylation (glucagon/epinephrine)
Glycogenolysis (Glycogen Degradation)
- Glycogen phosphorylase cleaves α(1→4) bonds → Glucose-1-P (requires inorganic phosphate Pi; NOT water)
- Debranching enzyme (has two activities):
- Oligo-α(1→4)→(1→4) glucan transferase (transfers 3 glucose residues)
- α(1→6) glucosidase (cleaves branch point → free glucose)
- Glucose-1-P → Glucose-6-P (Phosphoglucomutase)
- In liver: Glucose-6-P → Glucose (Glucose-6-phosphatase) → released to blood
In muscle: NO glucose-6-phosphatase → glucose stays for glycolysis
Regulation of Glycogen Metabolism
| State | Hormone | Effect |
|---|
| Fed/high glucose | Insulin | Activates glycogen synthase; inhibits phosphorylase → SYNTHESIS |
| Fasting/stress | Glucagon (liver), Epinephrine | Activates phosphorylase via cAMP/PKA cascade → DEGRADATION |
CHAPTER 7: GLUCONEOGENESIS
Definition: Synthesis of glucose from non-carbohydrate precursors.
Location: Mainly liver (~90%), some in kidney
When: After a prolonged fast (>12-24 hours when liver glycogen is depleted)
Substrates (Gluconeogenic Precursors)
- Lactate - from RBCs and exercising muscle (via Cori cycle)
- Glycerol - from adipose tissue lipolysis
- Glucogenic amino acids - all except leucine and lysine
- Propionate - from odd-chain fatty acids
Bypassing the 3 Irreversible Steps of Glycolysis
| Glycolysis (irreversible) | Gluconeogenesis (bypass) | Enzyme |
|---|
| Glucose → G-6-P | G-6-P → Glucose | Glucose-6-phosphatase (liver only) |
| F-6-P → F-1,6-bisP | F-1,6-bisP → F-6-P | Fructose-1,6-bisphosphatase |
| PEP → Pyruvate | Pyruvate → OAA → PEP | Pyruvate carboxylase + PEPCK |
Pyruvate carboxylase requires biotin (B₇) and is activated by acetyl-CoA. Located in mitochondria.
PEPCK (phosphoenolpyruvate carboxykinase) is in cytosol.
Cori Cycle
- Muscle glycolysis → Lactate → Blood → Liver → Gluconeogenesis → Glucose → Blood → Muscle
- Transfers energy burden from muscle to liver
CHAPTER 8: PENTOSE PHOSPHATE PATHWAY (HMP Shunt)
Location: Cytosol
Does NOT produce or consume ATP
Fig 13.2 - Lippincott: Full pentose phosphate pathway
Functions
- Produces NADPH - for reductive biosynthesis (fatty acids, cholesterol, steroid hormones) and protection against oxidative damage
- Produces Ribose-5-phosphate - for nucleotide/nucleic acid synthesis
Phase 1: Oxidative (Irreversible)
Glucose-6-P → 6-phosphogluconate → Ribulose-5-P + 2 NADPH + CO₂
- Rate-limiting enzyme: Glucose-6-phosphate dehydrogenase (G6PD)
- Highly active in: Liver, lactating mammary glands, adrenal cortex, RBCs
Phase 2: Non-oxidative (Reversible)
- Ribulose-5-P ⇌ Ribose-5-P (for nucleotides) or Xylulose-5-P
- Transketolase (requires thiamine/B₁) and Transaldolase interconvert sugars
- Products feed back into glycolysis as Fructose-6-P and Glyceraldehyde-3-P
G6PD Deficiency (Clinical Importance)
- X-linked recessive
- RBCs cannot regenerate NADPH → cannot reduce glutathione
- Oxidant stress (primaquine, infections, fava beans) causes hemolytic anemia
- Common in malaria-endemic regions (provides some protection against malaria)
CHAPTER 9: REGULATION OF BLOOD GLUCOSE
| Blood Glucose Level | Response |
|---|
| Normal: 70-110 mg/dL (fasting) | Basal insulin/glucagon balance |
| High glucose (postprandial) | ↑ Insulin → glycolysis, glycogenesis, lipogenesis |
| Low glucose (fasting) | ↑ Glucagon → glycogenolysis, gluconeogenesis, lipolysis |
Hormones Regulating Blood Glucose
| Hormone | Source | Effect on Blood Glucose |
|---|
| Insulin | Pancreatic β cells | ↓ (hypoglycemic) |
| Glucagon | Pancreatic α cells | ↑ (hyperglycemic) |
| Epinephrine | Adrenal medulla | ↑ (hyperglycemic) |
| Cortisol | Adrenal cortex | ↑ (hyperglycemic) |
| Growth hormone | Anterior pituitary | ↑ (hyperglycemic) |
QUICK SUMMARY TABLE: Energy Yields
| Pathway | Net ATP | Location |
|---|
| Glycolysis (anaerobic) | 2 ATP | Cytosol |
| Glycolysis (aerobic) | 8 ATP (including NADH) | Cytosol |
| Pyruvate → Acetyl-CoA | ~2.5 ATP/pyruvate | Mitochondria |
| TCA cycle (per Acetyl-CoA) | ~10 ATP | Mitochondria |
| Complete glucose oxidation | ~30-32 ATP | Both |
Sources: Lippincott Illustrated Reviews: Biochemistry, 8th ed (ISBN 9781975155063) | Harper's Illustrated Biochemistry, 32nd ed (ISBN 9781260469943)