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πŸ—‚οΈ What's in the Sheet

SectionContentVisual Type
1 β€” Big PictureAll 6 biomolecule + energy topics linked🧠 Mind Map
2 β€” BiomoleculesCarbs, Proteins, Lipids, Nucleic Acids with bond energiesπŸ—ƒοΈ Colour Tables
3 β€” BioenergeticsΞ”G, ATP structure, coupled reactions with worked example⚑ Cards + Equations
4 β€” Glucose β†’ ATPGlycolysis β†’ Pyruvate β†’ TCA β†’ ETC β†’ ATP SynthaseπŸ”€ Flowchart + ATP yield bar
5 β€” ETC ComplexesComplexes I–V, mobile carriers, inhibitors (Cyanide, DNP, etc.)πŸ”‹ Strip diagram + tables
6 β€” CoenzymesNAD⁺, FAD, CoA, TPP, Biotin, PLP β€” vitamins + ATP yieldsπŸ§ͺ Reference table
7 β€” High-Yield FactsAerobic vs Anaerobic, exam traps, mnemonics🎯 Chip cards + comparison

⚑ Key Numbers to Burn Into Memory

  • 1 Glucose (aerobic) = ~32 ATP
  • NADH β†’ 2.5 ATP | FADHβ‚‚ β†’ 1.5 ATP
  • ATP hydrolysis Ξ”GΒ° = βˆ’7.3 kcal/mol
  • Anaerobic = only 2 ATP (cytoplasm only)
  • Uncouplers (DNP) = Oβ‚‚ consumption ↑ but ATP ↓ (exam trap!)
Sources: Harper's Illustrated Biochemistry 32e & Lippincott's Biochemistry 8e

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Biomolecules Bioenergetics StudySheet

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This PDF contains all 7 sections:
  • 🧠 Mind Map grid (colour-coded)
  • 🍬 Carbs, Proteins, Lipids, Nucleic Acids tables
  • ⚑ Free Energy (Ξ”G) + ATP tables
  • πŸ”€ Glucose β†’ ATP flowchart with ATP yield bar
  • πŸ”‹ ETC complexes I–V strip + inhibitors table
  • πŸ§ͺ Coenzymes & vitamins table
  • 🎯 High-yield facts + Aerobic vs Anaerobic comparison
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🧬 Biomolecules + Bioenergetics

⚑ 5-Minute Rapid Revision Sheet | Harper's 32e & Lippincott's 8e


🧠 Section 1 β€” Big Picture Mind Map

                    🍭 CARBOHYDRATES              🧩 PROTEINS
                  Monosaccharides→Polysaccharides  AA→Polypeptides
                  Energy source, cell signals      Structure, enzymes
                           \                           /
                            \                         /
        🧈 LIPIDS β€”β€”β€”β€”β€”β€”β€”β€”β€” [ BIOCHEMISTRY CORE ] β€”β€”β€”β€”β€”β€”β€”β€”β€” πŸ”¬ NUCLEIC ACIDS
        FA, TG, Phospholipids       ⬆⬇            DNA & RNA, Purines/Pyrimidines
        Energy storage, membranes  /   \
                                  /     \
                   ⚑ ATP & BIOENERGETICS   πŸ”‹ ETC & OXPHOS
                   Ξ”G, Keq, Coupled rxns   Complexes I–V, 32 ATP

🍬 Section 2 β€” Biomolecules at a Glance

🍭 Carbohydrates

TypeExamplesKey Feature
MonosaccharideGlucose, Fructose, GalactoseAldoses/Ketoses; reducing sugars
DisaccharideSucrose, Lactose, MaltoseGlycosidic bond (Ξ± or Ξ²)
OligosaccharideRaffinose, cell-surface oligosaccharides3–10 monosaccharides
PolysaccharideGlycogen, Starch, CelluloseΞ±-1,4 (+ Ξ±-1,6 branch in Glycogen)
🟒 Remember: Glycogen = α-1,4 backbone + α-1,6 branch points (liver & muscle). Cellulose = β-1,4 (NOT digestible). Brain = 100% glucose-dependent normally.

🧩 Proteins β€” Structural Levels

LevelDescriptionStabilising Forces
1Β° PrimaryAA sequence; peptide bondsCovalent (peptide bond)
2Β° SecondaryΞ±-helix, Ξ²-sheet, turnsH-bonds along backbone
3Β° TertiaryFull 3D fold of polypeptideH-bonds, Van der Waals, hydrophobic, disulfide
4Β° QuaternaryMultiple subunits (e.g. Hb)Same as 3Β° (mostly non-covalent)
πŸ”΅ Key: Hydrophobic AA cluster inside the protein; charged/polar AA on the surface. Denaturation disrupts 2Β°/3Β°/4Β° β€” NOT 1Β° (peptide bonds remain intact).

🧈 Lipids

ClassComponentsFunction
Fatty AcidsSaturated / Unsaturated chainsEnergy substrate (Ξ²-oxidation)
TriglyceridesGlycerol + 3 FALong-term energy storage (adipose)
PhospholipidsGlycerol + 2 FA + phosphate headMembrane bilayer; amphipathic
CholesterolSterol ringMembrane fluidity; steroid precursor
SphingolipidsSphingosine + FACell signalling; myelin sheath
🟑 Key: Phospholipids are amphipathic β€” hydrophilic heads face water, hydrophobic tails cluster together to form the bilayer.

πŸ”¬ Nucleic Acids β€” DNA vs RNA

FeatureDNARNA
Sugar2'-DeoxyriboseRibose
BasesA, T, G, CA, U, G, C
StructureDouble helixSingle strand
PurinesAdenine (A), Guanine (G) β€” double ringSame
PyrimidinesCytosine (C), Thymine (T) β€” single ringCytosine (C), Uracil (U)
H-bondsA=T (2 bonds), G≑C (3 bonds)A=U (2), G≑C (3)
🟣 Mnemonic: PURe As Gold = Purines: Adenine, Guanine. CUT the PY = Pyrimidines: Cytosine, Uracil, Thymine.

πŸ”— Covalent Bond Energies (Quick Reference)

BondEnergy (kcal/mol)BondEnergy (kcal/mol)
O–O34C–H99
S–S (disulfide)51C–S108
C–N70O–H110
N–H94C=O164

⚑ Section 3 β€” Bioenergetics Core Concepts

🌑️ Free Energy

        Ξ”G  =  Ξ”H  βˆ’  TΒ·Ξ”S
        β”‚       β”‚       β”‚
        β”‚    Enthalpy  Entropy Γ— Temp (K)
     Free energy change
Ξ”G SignMeaningReaction TypeSpontaneous?
Ξ”G < 0 βœ…Energy releasedExergonicYES
Ξ”G > 0 ❌Energy requiredEndergonicNO
Ξ”G = 0 βš–οΈEquilibriumNo net changeβ€”
Key equations:
  • Ξ”GΒ° = βˆ’RT ln Keq
  • Ξ”G = Ξ”GΒ° + RT ln [Products]/[Reactants]
  • Ξ”GΒ° values are additive in sequential reactions
  • Standard conditions: 1 mol/L, pH 7.0, 25Β°C
🟑 Key: Ξ”GΒ° = βˆ’RT ln Keq. If Keq > 1 β†’ Ξ”GΒ° < 0 (favourable). If Keq < 1 β†’ Ξ”GΒ° > 0 (unfavourable).

⚑ ATP β€” The Energy Currency

ATP PropertyDetail
StructureAdenosine + 3 phosphate groups
Ξ”GΒ° of hydrolysis (ATPβ†’ADP+Pi)βˆ’7.3 kcal/mol
High-energy bonds2 phosphoanhydride bonds (β–γ and α–β)
In-cell formMg²⁺ complex (Mg-ATP)
Adenylate kinase2 ADP β‡Œ ATP + AMP
NOT used asLong-term energy store (turned over rapidly)
Creatine phosphateMuscle energy reserve (Ξ”GΒ° = βˆ’10.3 kcal/mol)
πŸ”΄ EXAM TRAP: ATP has 2 high-energy bonds (β–γ and α–β phosphoanhydride), NOT 3! The α–ribose bond is NOT high-energy.

πŸ”„ Coupled Reactions (Worked Example)

Glucose + Pi β†’ Glucose-6-P       Ξ”GΒ° = +3.3 kcal/mol  ❌ (unfavourable)
ATP β†’ ADP + Pi                   Ξ”GΒ° = βˆ’7.3 kcal/mol  βœ… (favourable)
─────────────────────────────────────────────────────────
NET: Glucose + ATP β†’ G-6-P + ADP Ξ”GΒ° = βˆ’4.0 kcal/mol  βœ… SPONTANEOUS
  • Endergonic reactions are driven by coupling to ATP hydrolysis
  • Share a common intermediate
  • Overall Ξ”GΒ° = sum of individual Ξ”GΒ° values

πŸ”€ Section 4 β€” Glucose β†’ ATP Flowchart

🍭 GLUCOSE
    β”‚
    β–Ό ─────────────────────────────────────────
   GLYCOLYSIS (Cytoplasm)
   β€’ 2 ATP net (substrate-level phosphorylation)
   β€’ 2 NADH produced
   β€’ Glucose (C6) β†’ 2 Pyruvate (C3)
    β”‚
    β–Ό ─────────────────────────────────────────
   PYRUVATE DECARBOXYLATION (Mitochondrial matrix)
   β€’ Pyruvate β†’ Acetyl-CoA
   β€’ 2 NADH + 2 COβ‚‚ released
   β€’ Enzyme: Pyruvate dehydrogenase complex (needs B₁/TPP)
    β”‚
    β–Ό ─────────────────────────────────────────
   TCA CYCLE / KREBS CYCLE (Mitochondrial matrix)
   β€’ Per glucose: 6 NADH, 2 FADHβ‚‚, 2 GTP
   β€’ Produces: 4 COβ‚‚
   β€’ Key intermediates: Citrate β†’ Isocitrate β†’ Ξ±-KG
     β†’ Succinyl-CoA β†’ Succinate β†’ Fumarate β†’ Malate β†’ OAA
    β”‚
    β–Ό ─────────────────────────────────────────
   ELECTRON TRANSPORT CHAIN (Inner mitochondrial membrane)
   β€’ NADH & FADHβ‚‚ donate electrons to Complexes I–IV
   β€’ Creates H⁺ gradient across inner membrane
    β”‚
    β–Ό ─────────────────────────────────────────
   ATP SYNTHASE β€” Complex V
   β€’ H⁺ flows back through Fβ‚€F₁ ATPase
   β€’ ADP + Pi β†’ ATP
    β”‚
    β–Ό ─────────────────────────────────────────
   COβ‚‚ + Hβ‚‚O  +  ~32 ATP  πŸŽ‰

⚑ ATP Yield Summary

StageNADHFADHβ‚‚Direct ATPATP Equivalent
Glycolysis2β€”2~7
Pyruvate decarboxylation2β€”β€”~5
TCA Cycle622 (GTP)~20
TOTAL1024~32 ATP
NADH = 2.5 ATP each | FADHβ‚‚ = 1.5 ATP each

πŸ”‹ Section 5 β€” Electron Transport Chain

Complex Strip

ComplexNameSubstrateH⁺ PumpedKey Components
INADH DehydrogenaseNADH β†’ NAD⁺4 H⁺FMN, Fe-S clusters
IISuccinate DehydrogenaseFADHβ‚‚ β†’ FAD0 H⁺ ⚠️Fe-S, FAD; links TCAβ†’ETC
IIICytochrome bc₁CoQ β†’ Cyt c4 H⁺Q cycle, Cyt b, c₁
IVCytochrome c OxidaseCyt c β†’ Oβ‚‚2 H⁺Cu, heme a, a₃; Oβ‚‚β†’Hβ‚‚O
VATP SynthaseH⁺ gradient β†’ ATP(H⁺ re-enters)Fβ‚€ motor, F₁ head

Mobile Carriers

CarrierLocationCarries
CoQ (Ubiquinone)Lipid bilayer (mobile)2 electrons + 2H⁺
Cytochrome cIntermembrane space1 electron only

πŸ›‘ ETC Inhibitors β€” High Yield Table

InhibitorTargetMechanismEffect
Rotenone / AmytalComplex IBlocks NADH oxidation↓ ATP, ↓ Oβ‚‚ use
MalonateComplex IICompetitive vs succinate↓ FADHβ‚‚ oxidation
Antimycin AComplex IIIBlocks Q cycle↓ ATP, ↓ Oβ‚‚ use
Cyanide / CO / Hβ‚‚SComplex IVBinds heme a₃; blocks Oβ‚‚FATAL β€” stops ETC
OligomycinComplex V (Fβ‚€)Blocks H⁺ channel↓ ATP, ↓ Oβ‚‚ use
DNP / ThermogeninInner membraneDissipates H⁺ gradientATP↓, Oβ‚‚ use INCREASES
πŸ”΄ EXAM TRAP: Uncouplers (DNP, Thermogenin/UCP-1) = ETC keeps running + Oβ‚‚ consumption INCREASES, but ATP synthesis STOPS β€” energy released as heat. Inhibitors stop both.

πŸ§ͺ Section 6 β€” Key Coenzymes & Vitamins

CoenzymeVitamin PrecursorReduced FormRoleATP Yield
NAD⁺Niacin (B₃)NADHElectron carrier β†’ Complex I~2.5 ATP
FADRiboflavin (Bβ‚‚)FADHβ‚‚Electron carrier β†’ Complex II~1.5 ATP
CoAPantothenic acid (Bβ‚…)Acyl-CoAAcyl group carrierβ€”
TPPThiamine (B₁)Active formDecarboxylation reactionsβ€”
BiotinBiotin (B₇)CarboxybiotinCOβ‚‚ carrier (carboxylations)β€”
PLPPyridoxine (B₆)Active formTransamination (AA metabolism)β€”
LipoamideLipoic acidDihydrolipoamidePDH & Ξ±-KG dehydrogenaseβ€”
🟒 Mnemonic for B-vitamins in metabolism: The Ripe Nectarine Provides Body's Life = Thiamine(B₁), Riboflavin(Bβ‚‚), Niacin(B₃), Pantothenic(Bβ‚…), Biotin(B₇), Lipoic acid

🎯 Section 7 β€” Last-Minute High-Yield Facts

Quick Recall Cards

🍭 Carbs🧩 Proteins⚑ ATPπŸ”‹ ETC
Reducing sugar = free anomeric –OH20 standard AAsΞ”GΒ° = βˆ’7.3 kcal/molNADH β†’ 2.5 ATP
Glycogen: Ξ±-1,4 + Ξ±-1,69 are essentialPEP > ATP > AMP (energy)FADHβ‚‚ β†’ 1.5 ATP
Cellulose: Ξ²-1,4 (indigestible)Disulfide = Cys-CysMg²⁺ complex in cells1 Glucose β†’ ~32 ATP
Starch: amylose + amylopectinChaperones prevent misfoldingCreatine-P = muscle reserveOβ‚‚ only at Complex IV
N-glycan β†’ Asn; O-glycan β†’ Ser/ThrZymogen = inactive precursor2 ADP β‡Œ ATP + AMPCyt c between III & IV

πŸ“Š Aerobic vs Anaerobic β€” Final Comparison

Feature🌬️ AEROBIC🚫 ANAEROBIC
Oβ‚‚ requiredYesNo
ATP yield~32 ATP2 ATP
Final e⁻ acceptorOβ‚‚ β†’ Hβ‚‚OPyruvate β†’ Lactate
LocationCytoplasm + MitochondriaCytoplasm only
NADH fateETC β†’ ATPRegenerates NAD⁺
End productsCOβ‚‚ + Hβ‚‚OLactate (humans) / Ethanol (yeast)
SpeedSlow but efficientFast but inefficient
When usedRest / aerobic exerciseSprinting, hypoxia, RBCs

🧠 Top 10 One-Liners to Memorise

  1. Ξ”G < 0 = spontaneous = exergonic (energy OUT)
  2. Ξ”G = 0 = equilibrium (no net reaction)
  3. ATP has 2 high-energy bonds, NOT 3
  4. Complex II does NOT pump protons
  5. Cyanide kills at Complex IV (blocks Oβ‚‚ binding)
  6. DNP = uncoupler β†’ Oβ‚‚ use ↑, ATP ↓, heat ↑
  7. NADH enters at Complex I β†’ 2.5 ATP
  8. FADHβ‚‚ enters at Complex II β†’ 1.5 ATP
  9. Cellulose = Ξ²-1,4 β†’ humans cannot digest it
  10. G≑C has 3 H-bonds; A=T/A=U has 2 H-bonds

Sources: Harper's Illustrated Biochemistry 32e & Lippincott's Biochemistry 8e

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Inline: print("hello")
Python block:
def atp_yield(nadh, fadh2):
    return (nadh * 2.5) + (fadh2 * 1.5)

print(atp_yield(10, 2))  # Output: 28.0
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Glucose β†’ Pyruvate β†’ Acetyl-CoA β†’ TCA β†’ ETC β†’ ATP
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const delta_g = (dH, T, dS) => dH - T * dS;
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{ "molecule": "ATP", "bonds": 2, "dG": -7.3 }

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Inline math: Ξ”G = Ξ”H βˆ’ TΞ”S
Using Unicode symbols directly:
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β”Œβ”€β”€β”€β”€β”€β”€β”€β”€β”€β”     β”Œβ”€β”€β”€β”€β”€β”€β”€β”€β”€β”     β”Œβ”€β”€β”€β”€β”€β”€β”€β”€β”€β”
β”‚ Glucose │────▢│Glycolysis│────▢│ Pyruvateβ”‚
β””β”€β”€β”€β”€β”€β”€β”€β”€β”€β”˜     β””β”€β”€β”€β”€β”€β”€β”€β”€β”€β”˜     β””β”€β”€β”€β”€β”€β”€β”€β”€β”€β”˜
                                      β”‚
                                      β–Ό
                               β”Œβ”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”
                               β”‚  Acetyl-CoA  β”‚
                               β””β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”˜
        [Topic]
       /   |   \
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  [A]    [B]    [C]
   |      |      |
  [a1]  [b1]   [c1]

πŸ“Š Progress / Bar Charts (ASCII)

ATP Yield:
Glycolysis  β–ˆβ–ˆβ–‘β–‘β–‘β–‘β–‘β–‘β–‘β–‘  2 ATP
Pyruvate    β–ˆβ–ˆβ–ˆβ–ˆβ–‘β–‘β–‘β–‘β–‘β–‘  5 ATP
TCA Cycle   β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–‘β–‘  20 ATP
TOTAL       β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ  32 ATP

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Footnotes

  1. Source: Harper's Illustrated Biochemistry 32e ↩
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