Here is the complete study sheet rendered directly in chat β all 7 sections:
𧬠Biomolecules + Bioenergetics
β‘ 5-Minute Rapid Revision Sheet | Harper's 32e & Lippincott's 8e
π§ Section 1 β Big Picture Mind Map
π CARBOHYDRATES π§© PROTEINS
MonosaccharidesβPolysaccharides AAβPolypeptides
Energy source, cell signals Structure, enzymes
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π§ LIPIDS βββββββββ [ BIOCHEMISTRY CORE ] βββββββββ π¬ NUCLEIC ACIDS
FA, TG, Phospholipids β¬β¬ DNA & RNA, Purines/Pyrimidines
Energy storage, membranes / \
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β‘ ATP & BIOENERGETICS π ETC & OXPHOS
ΞG, Keq, Coupled rxns Complexes IβV, 32 ATP
π¬ Section 2 β Biomolecules at a Glance
π Carbohydrates
| Type | Examples | Key Feature |
|---|
| Monosaccharide | Glucose, Fructose, Galactose | Aldoses/Ketoses; reducing sugars |
| Disaccharide | Sucrose, Lactose, Maltose | Glycosidic bond (Ξ± or Ξ²) |
| Oligosaccharide | Raffinose, cell-surface oligosaccharides | 3β10 monosaccharides |
| Polysaccharide | Glycogen, Starch, Cellulose | Ξ±-1,4 (+ Ξ±-1,6 branch in Glycogen) |
π’ Remember: Glycogen = Ξ±-1,4 backbone + Ξ±-1,6 branch points (liver & muscle). Cellulose = Ξ²-1,4 (NOT digestible). Brain = 100% glucose-dependent normally.
π§© Proteins β Structural Levels
| Level | Description | Stabilising Forces |
|---|
| 1Β° Primary | AA sequence; peptide bonds | Covalent (peptide bond) |
| 2Β° Secondary | Ξ±-helix, Ξ²-sheet, turns | H-bonds along backbone |
| 3Β° Tertiary | Full 3D fold of polypeptide | H-bonds, Van der Waals, hydrophobic, disulfide |
| 4Β° Quaternary | Multiple subunits (e.g. Hb) | Same as 3Β° (mostly non-covalent) |
π΅ Key: Hydrophobic AA cluster inside the protein; charged/polar AA on the surface. Denaturation disrupts 2Β°/3Β°/4Β° β NOT 1Β° (peptide bonds remain intact).
π§ Lipids
| Class | Components | Function |
|---|
| Fatty Acids | Saturated / Unsaturated chains | Energy substrate (Ξ²-oxidation) |
| Triglycerides | Glycerol + 3 FA | Long-term energy storage (adipose) |
| Phospholipids | Glycerol + 2 FA + phosphate head | Membrane bilayer; amphipathic |
| Cholesterol | Sterol ring | Membrane fluidity; steroid precursor |
| Sphingolipids | Sphingosine + FA | Cell signalling; myelin sheath |
π‘ Key: Phospholipids are amphipathic β hydrophilic heads face water, hydrophobic tails cluster together to form the bilayer.
π¬ Nucleic Acids β DNA vs RNA
| Feature | DNA | RNA |
|---|
| Sugar | 2'-Deoxyribose | Ribose |
| Bases | A, T, G, C | A, U, G, C |
| Structure | Double helix | Single strand |
| Purines | Adenine (A), Guanine (G) β double ring | Same |
| Pyrimidines | Cytosine (C), Thymine (T) β single ring | Cytosine (C), Uracil (U) |
| H-bonds | A=T (2 bonds), Gβ‘C (3 bonds) | A=U (2), Gβ‘C (3) |
π£ Mnemonic: PURe As Gold = Purines: Adenine, Guanine. CUT the PY = Pyrimidines: Cytosine, Uracil, Thymine.
π Covalent Bond Energies (Quick Reference)
| Bond | Energy (kcal/mol) | Bond | Energy (kcal/mol) |
|---|
| OβO | 34 | CβH | 99 |
| SβS (disulfide) | 51 | CβS | 108 |
| CβN | 70 | OβH | 110 |
| NβH | 94 | C=O | 164 |
β‘ Section 3 β Bioenergetics Core Concepts
π‘οΈ Free Energy
ΞG = ΞH β TΒ·ΞS
β β β
β Enthalpy Entropy Γ Temp (K)
Free energy change
| ΞG Sign | Meaning | Reaction Type | Spontaneous? |
|---|
| ΞG < 0 β
| Energy released | Exergonic | YES |
| ΞG > 0 β | Energy required | Endergonic | NO |
| ΞG = 0 βοΈ | Equilibrium | No net change | β |
Key equations:
ΞGΒ° = βRT ln Keq
ΞG = ΞGΒ° + RT ln [Products]/[Reactants]
- ΞGΒ° values are additive in sequential reactions
- Standard conditions: 1 mol/L, pH 7.0, 25Β°C
π‘ Key: ΞGΒ° = βRT ln Keq. If Keq > 1 β ΞGΒ° < 0 (favourable). If Keq < 1 β ΞGΒ° > 0 (unfavourable).
β‘ ATP β The Energy Currency
| ATP Property | Detail |
|---|
| Structure | Adenosine + 3 phosphate groups |
| ΞGΒ° of hydrolysis (ATPβADP+Pi) | β7.3 kcal/mol |
| High-energy bonds | 2 phosphoanhydride bonds (Ξ²βΞ³ and Ξ±βΞ²) |
| In-cell form | MgΒ²βΊ complex (Mg-ATP) |
| Adenylate kinase | 2 ADP β ATP + AMP |
| NOT used as | Long-term energy store (turned over rapidly) |
| Creatine phosphate | Muscle energy reserve (ΞGΒ° = β10.3 kcal/mol) |
π΄ EXAM TRAP: ATP has 2 high-energy bonds (Ξ²βΞ³ and Ξ±βΞ² phosphoanhydride), NOT 3! The Ξ±βribose bond is NOT high-energy.
π Coupled Reactions (Worked Example)
Glucose + Pi β Glucose-6-P ΞGΒ° = +3.3 kcal/mol β (unfavourable)
ATP β ADP + Pi ΞGΒ° = β7.3 kcal/mol β
(favourable)
βββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
NET: Glucose + ATP β G-6-P + ADP ΞGΒ° = β4.0 kcal/mol β
SPONTANEOUS
- Endergonic reactions are driven by coupling to ATP hydrolysis
- Share a common intermediate
- Overall ΞGΒ° = sum of individual ΞGΒ° values
π Section 4 β Glucose β ATP Flowchart
π GLUCOSE
β
βΌ βββββββββββββββββββββββββββββββββββββββββ
GLYCOLYSIS (Cytoplasm)
β’ 2 ATP net (substrate-level phosphorylation)
β’ 2 NADH produced
β’ Glucose (C6) β 2 Pyruvate (C3)
β
βΌ βββββββββββββββββββββββββββββββββββββββββ
PYRUVATE DECARBOXYLATION (Mitochondrial matrix)
β’ Pyruvate β Acetyl-CoA
β’ 2 NADH + 2 COβ released
β’ Enzyme: Pyruvate dehydrogenase complex (needs Bβ/TPP)
β
βΌ βββββββββββββββββββββββββββββββββββββββββ
TCA CYCLE / KREBS CYCLE (Mitochondrial matrix)
β’ Per glucose: 6 NADH, 2 FADHβ, 2 GTP
β’ Produces: 4 COβ
β’ Key intermediates: Citrate β Isocitrate β Ξ±-KG
β Succinyl-CoA β Succinate β Fumarate β Malate β OAA
β
βΌ βββββββββββββββββββββββββββββββββββββββββ
ELECTRON TRANSPORT CHAIN (Inner mitochondrial membrane)
β’ NADH & FADHβ donate electrons to Complexes IβIV
β’ Creates HβΊ gradient across inner membrane
β
βΌ βββββββββββββββββββββββββββββββββββββββββ
ATP SYNTHASE β Complex V
β’ HβΊ flows back through FβFβ ATPase
β’ ADP + Pi β ATP
β
βΌ βββββββββββββββββββββββββββββββββββββββββ
COβ + HβO + ~32 ATP π
β‘ ATP Yield Summary
| Stage | NADH | FADHβ | Direct ATP | ATP Equivalent |
|---|
| Glycolysis | 2 | β | 2 | ~7 |
| Pyruvate decarboxylation | 2 | β | β | ~5 |
| TCA Cycle | 6 | 2 | 2 (GTP) | ~20 |
| TOTAL | 10 | 2 | 4 | ~32 ATP |
NADH = 2.5 ATP each | FADHβ = 1.5 ATP each
π Section 5 β Electron Transport Chain
Complex Strip
| Complex | Name | Substrate | HβΊ Pumped | Key Components |
|---|
| I | NADH Dehydrogenase | NADH β NADβΊ | 4 HβΊ | FMN, Fe-S clusters |
| II | Succinate Dehydrogenase | FADHβ β FAD | 0 HβΊ β οΈ | Fe-S, FAD; links TCAβETC |
| III | Cytochrome bcβ | CoQ β Cyt c | 4 HβΊ | Q cycle, Cyt b, cβ |
| IV | Cytochrome c Oxidase | Cyt c β Oβ | 2 HβΊ | Cu, heme a, aβ; OββHβO |
| V | ATP Synthase | HβΊ gradient β ATP | (HβΊ re-enters) | Fβ motor, Fβ head |
Mobile Carriers
| Carrier | Location | Carries |
|---|
| CoQ (Ubiquinone) | Lipid bilayer (mobile) | 2 electrons + 2HβΊ |
| Cytochrome c | Intermembrane space | 1 electron only |
π ETC Inhibitors β High Yield Table
| Inhibitor | Target | Mechanism | Effect |
|---|
| Rotenone / Amytal | Complex I | Blocks NADH oxidation | β ATP, β Oβ use |
| Malonate | Complex II | Competitive vs succinate | β FADHβ oxidation |
| Antimycin A | Complex III | Blocks Q cycle | β ATP, β Oβ use |
| Cyanide / CO / HβS | Complex IV | Binds heme aβ; blocks Oβ | FATAL β stops ETC |
| Oligomycin | Complex V (Fβ) | Blocks HβΊ channel | β ATP, β Oβ use |
| DNP / Thermogenin | Inner membrane | Dissipates HβΊ gradient | ATPβ, Oβ use INCREASES |
π΄ EXAM TRAP: Uncouplers (DNP, Thermogenin/UCP-1) = ETC keeps running + Oβ consumption INCREASES, but ATP synthesis STOPS β energy released as heat. Inhibitors stop both.
π§ͺ Section 6 β Key Coenzymes & Vitamins
| Coenzyme | Vitamin Precursor | Reduced Form | Role | ATP Yield |
|---|
| NADβΊ | Niacin (Bβ) | NADH | Electron carrier β Complex I | ~2.5 ATP |
| FAD | Riboflavin (Bβ) | FADHβ | Electron carrier β Complex II | ~1.5 ATP |
| CoA | Pantothenic acid (Bβ
) | Acyl-CoA | Acyl group carrier | β |
| TPP | Thiamine (Bβ) | Active form | Decarboxylation reactions | β |
| Biotin | Biotin (Bβ) | Carboxybiotin | COβ carrier (carboxylations) | β |
| PLP | Pyridoxine (Bβ) | Active form | Transamination (AA metabolism) | β |
| Lipoamide | Lipoic acid | Dihydrolipoamide | PDH & Ξ±-KG dehydrogenase | β |
π’ Mnemonic for B-vitamins in metabolism: The Ripe Nectarine Provides Body's Life = Thiamine(Bβ), Riboflavin(Bβ), Niacin(Bβ), Pantothenic(Bβ
), Biotin(Bβ), Lipoic acid
π― Section 7 β Last-Minute High-Yield Facts
Quick Recall Cards
| π Carbs | π§© Proteins | β‘ ATP | π ETC |
|---|
| Reducing sugar = free anomeric βOH | 20 standard AAs | ΞGΒ° = β7.3 kcal/mol | NADH β 2.5 ATP |
| Glycogen: Ξ±-1,4 + Ξ±-1,6 | 9 are essential | PEP > ATP > AMP (energy) | FADHβ β 1.5 ATP |
| Cellulose: Ξ²-1,4 (indigestible) | Disulfide = Cys-Cys | MgΒ²βΊ complex in cells | 1 Glucose β ~32 ATP |
| Starch: amylose + amylopectin | Chaperones prevent misfolding | Creatine-P = muscle reserve | Oβ only at Complex IV |
| N-glycan β Asn; O-glycan β Ser/Thr | Zymogen = inactive precursor | 2 ADP β ATP + AMP | Cyt c between III & IV |
π Aerobic vs Anaerobic β Final Comparison
| Feature | π¬οΈ AEROBIC | π« ANAEROBIC |
|---|
| Oβ required | Yes | No |
| ATP yield | ~32 ATP | 2 ATP |
| Final eβ» acceptor | Oβ β HβO | Pyruvate β Lactate |
| Location | Cytoplasm + Mitochondria | Cytoplasm only |
| NADH fate | ETC β ATP | Regenerates NADβΊ |
| End products | COβ + HβO | Lactate (humans) / Ethanol (yeast) |
| Speed | Slow but efficient | Fast but inefficient |
| When used | Rest / aerobic exercise | Sprinting, hypoxia, RBCs |
π§ Top 10 One-Liners to Memorise
- ΞG < 0 = spontaneous = exergonic (energy OUT)
- ΞG = 0 = equilibrium (no net reaction)
- ATP has 2 high-energy bonds, NOT 3
- Complex II does NOT pump protons
- Cyanide kills at Complex IV (blocks Oβ binding)
- DNP = uncoupler β Oβ use β, ATP β, heat β
- NADH enters at Complex I β 2.5 ATP
- FADHβ enters at Complex II β 1.5 ATP
- Cellulose = Ξ²-1,4 β humans cannot digest it
- Gβ‘C has 3 H-bonds; A=T/A=U has 2 H-bonds
Sources: Harper's Illustrated Biochemistry 32e & Lippincott's Biochemistry 8e