Describe screening for urine inborn error and describe use of paper chromatography

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Screening for Urine Inborn Errors of Metabolism

Overview and Purpose

Many inborn errors of metabolism (IEM) cause severe mental retardation, seizures, or organ damage if treatment is delayed. Early detection - ideally in the neonatal period - allows dietary or pharmacological intervention before irreversible harm occurs. Screening targets conditions where an effective treatment exists and early intervention changes outcomes.
  • Park's Textbook of Preventive and Social Medicine
  • Harper's Illustrated Biochemistry, 32nd Ed.

Neonatal Blood Spot Screening (Guthrie Test)

The cornerstone of IEM screening in neonates is a heel-prick blood sample taken 6-10 days after birth (when affected enzymes have reached full expression). Three to four drops are blotted onto thick absorbent filter paper - these are called Guthrie cards or dried blood spots (DBS).
The Guthrie Bacterial Inhibition Test (the first IEM screening test):
  • A disc from the DBS paper is placed on an agar plate seeded with a phenylalanine-requiring strain of Bacillus subtilis, along with a competitive inhibitor (beta-thienylalanine) calibrated to block bacterial growth at normal blood phenylalanine levels.
  • If phenylalanine is elevated (as in phenylketonuria), it overcomes the inhibitor and bacteria form visible colonies.
  • The same DBS method can test for PKU, galactosaemia, and maple syrup urine disease (MSUD).
In most modern centres, the bacterial inhibition test has been superseded by chromatographic and tandem mass spectrometry (TMS/MS-MS) techniques that permit simultaneous detection of dozens of metabolites and a wide range of IEM.
  • Harper's Illustrated Biochemistry, 32nd Ed., p. 585
  • Park's Textbook of Preventive and Social Medicine

Urine Chemical Spot Tests

Before tandem mass spectrometry, a series of urine chemical spot (colorimetric) tests provided rapid, inexpensive first-line screening. These detect abnormal metabolites in urine and are still used in resource-limited settings or as adjuncts.
DiseaseFerric ChlorideDNPHBenedict ReactionNitroprusside
PhenylketonuriaGreen+--
Maple syrup urine diseaseNavy blue+--
TyrosinemiaPale green (transient)+-+
HistidinemiaGreen-brown±--
Propionic acidemiaPurple+--
Methylmalonic aciduriaPurple+--
Homocystinuria---+
Cystinuria---+
Galactosemia--+-
  • Ferric chloride test: Detects phenylpyruvic acid (PKU) and other keto acids; colour varies by metabolite.
  • DNPH (2,4-dinitrophenylhydrazine) test: Detects keto acids (positive in PKU, MSUD, tyrosinemia, organic acidaemias).
  • Benedict's reaction: Detects reducing sugars in urine (galactose in galactosaemia, fructose in fructosuria, glucose).
  • Nitroprusside reaction: Detects sulfhydryl groups - positive in homocystinuria and cystinuria.
  • Adams and Victor's Principles of Neurology, 12th Ed.

Conditions Commonly Screened

ConditionIncidence (per 100,000 births)
Phenylketonuria (PKU)6.6
Biotinidase deficiency5.4
Very long-chain acyl-CoA dehydrogenase deficiency3.3
Galactosemia1.5
Cobalamin (B12) deficiency1.3
Argininosuccinic aciduria1.0
Homocystinuria0.4
Maple syrup urine disease0.4
Data from New England Newborn Screening Program (tandem mass spectrometry of dried blood spot)
  • Adams and Victor's Principles of Neurology, 12th Ed.

Paper Chromatography for Urine IEM Screening

Principle

Paper chromatography is a type of planar (partition) chromatography in which the stationary phase is water held in cellulose fibres of filter paper, and the mobile phase is an organic solvent or solvent mixture. Compounds migrate at different rates depending on their relative solubility in the stationary vs. mobile phase.

The Retardation Factor (Rf)

The key measurement in paper chromatography is the Rf value:
Rf = Ds / Df
Where:
  • Ds = distance traveled by the compound from the point of application
  • Df = distance traveled by the solvent front in the same time
Rf values always fall between 0 and 1. A compound strongly retained by the stationary phase has a low Rf; one with little retention approaches 1.
Planar chromatography Rf diagram
Separation in planar chromatography: compound B is more retained (lower Rf) than compound A. Df = distance of solvent front; Ds = distance of analyte.
  • Tietz Textbook of Laboratory Medicine, 7th Ed.

Application to Urine Sugars and Metabolites

For urine sugar identification:
  • Urine is applied as a spot and subjected to ascending or descending chromatography on paper.
  • After migration, the paper is developed with dinitrosalicylic acid (or other reagents like ninhydrin for amino acids) to produce coloured bands.
  • Each sugar (glucose, galactose, fructose, lactose, etc.) has a characteristic Rf value in a given solvent system.
  • Presumptive identification is made by comparing the unknown's Rf to known reference compounds run simultaneously on the same sheet.
  • If Rf values match, detection properties (colour of bands, response to reagent) are compared for further confirmation.
  • When paper chromatography is performed infrequently, it is simple, adequate, and requires little actual working time. When frequent separations are needed, thin-layer chromatography (TLC) is preferred for its shorter run time.
  • One common setup uses a 6 x 18-inch Pyrex jar with a tightly fitting cover.
For amino acids (aminoacidurias):
  • Ninhydrin reagent is used to detect amino acids, producing characteristic purple/yellow spots.
  • Two-dimensional paper chromatography (running the chromatogram in two directions with two different solvents) improves resolution when many amino acids are present.
  • Abnormal patterns of amino acid spots indicate specific conditions (e.g., elevated phenylalanine in PKU, elevated leucine/isoleucine/valine in MSUD).
  • Tietz Textbook of Laboratory Medicine, 7th Ed.

Paper vs. Thin-Layer Chromatography

FeaturePaper ChromatographyThin-Layer Chromatography (TLC)
Stationary phaseCellulose paper (water-impregnated)Silica gel / alumina on glass or plastic
Time requiredLongerShorter
EquipmentSimple (jar with cover)Slightly more involved
Best useInfrequent separationsFrequent or high-throughput separations
ResolutionAdequate for most IEM screeningHigher

Modern Supersession

While paper chromatography and spot tests remain useful teaching tools and are used in resource-limited settings, they have been largely replaced by:
  • Tandem mass spectrometry (MS-MS): Simultaneously screens dozens of metabolites from a single DBS in minutes, detecting amino acidopathies, organic acidaemias, and fatty acid oxidation disorders.
  • HPLC amino acid analysis: Provides quantitative amino acid profiles.
  • Enzymatic assays: Specific for individual enzyme deficiencies (e.g., galactose-1-phosphate uridyltransferase for galactosaemia).
  • Harper's Illustrated Biochemistry, 32nd Ed.; Thompson & Thompson Genetics and Genomics in Medicine, 9th Ed.

Well elaborated, well described screening of urine for inborn error and describe use of paper chromatography for mbbs 1st year Biochemistry students lectures

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Well elaborated, well described pdf on lecture topic screening of urine for inborn error and describe use of paper chromatography for mbbs 1st year Biochemistry students lectures

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