1. Extraction of Proteins
Definition
Protein extraction is the process of isolating proteins from plant, animal, microbial, or tissue samples in a soluble and usable form for analysis, purification, or pharmaceutical/food use.
Principle
Proteins differ in solubility according to their:
- pH
- Ionic strength
- Temperature
- Solvent composition
- Charge and isoelectric point
Extraction aims to break cells/tissues, dissolve the proteins in a suitable medium, and separate them from insoluble materials such as cell debris, fat, starch, and nucleic acids.
General steps in protein extraction
1. Selection and preparation of sample
- Select fresh material such as seeds, legumes, animal tissue, milk, egg, microorganisms, etc.
- Wash if necessary.
- Dry or keep cold, depending on the sample.
- Grind, homogenize, or powder the material to increase surface area.
2. Removal of unwanted material
Plant materials may contain fats, pigments, tannins, and carbohydrates. These can interfere with extraction.
- Defatting may be done with petroleum ether, hexane, or acetone.
- In animal tissues, fat and connective tissue are removed.
- Keep the sample cold to prevent protein degradation by enzymes.
3. Cell disruption
Proteins inside cells cannot be extracted unless the cell wall or cell membrane is broken.
Methods
- Grinding with mortar and pestle
- Homogenization in a blender/homogenizer
- Freeze-thaw cycles
- Sonication
- French press or high-pressure homogenization
- Enzyme treatment, for example lysozyme for bacteria
- Mild detergents for membrane proteins
4. Extraction using suitable solvent/buffer
The sample is mixed with an extraction medium.
Common extraction media:
- Distilled water
- Salt solution, for example sodium chloride
- Buffer solution, such as phosphate buffer or Tris buffer
- Dilute alkali, for example sodium hydroxide
- Dilute acid
- Detergent-containing buffer for membrane proteins
The mixture is stirred and kept at a suitable temperature, usually cold conditions, for a fixed period.
5. Centrifugation or filtration
- Centrifuge the mixture.
- Insoluble material forms a pellet.
- The protein-containing liquid above it is called the supernatant.
- The supernatant is collected for further purification.
6. Protein precipitation
Protein may be separated from the extract by precipitation.
7. Collection and purification
- Collect the precipitated protein by centrifugation.
- Redissolve it in a suitable buffer.
- Further purify by dialysis, chromatography, or electrophoresis if required.
Important methods of protein extraction
A. Water extraction
Principle
Water-soluble proteins dissolve in water.
Procedure
- Powder the sample.
- Mix with cold distilled water.
- Stir for a suitable time.
- Filter or centrifuge.
- Collect the aqueous protein extract.
Examples
- Albumins from seeds
- Some whey proteins from milk
Advantages
- Simple
- Cheap
- No toxic solvent is required
Limitation
Only water-soluble proteins are extracted effectively.
B. Salt extraction or salting-in
Principle
At low concentrations, neutral salts increase protein solubility. This is called salting-in.
Common salts:
- Sodium chloride
- Ammonium sulfate
- Sodium sulfate
Procedure
- Homogenize the sample in dilute salt solution.
- Stir under cold conditions.
- Centrifuge.
- Collect the supernatant containing solubilized protein.
Use
Useful for extraction of globulins and some myofibrillar proteins.
C. Alkaline extraction
Principle
Many plant proteins are more soluble at alkaline pH because they gain a net negative charge and repel one another.
Procedure
- Defat and powder the material, such as soybean or groundnut meal.
- Add dilute sodium hydroxide, usually at alkaline pH.
- Stir for a fixed time.
- Centrifuge or filter.
- Collect the alkaline extract containing protein.
- Adjust the pH to the protein's isoelectric point to precipitate the protein.
Advantages
- High extraction yield
- Commonly used for plant proteins
Limitation
Strong alkali or prolonged treatment can damage protein structure and reduce nutritional quality.
D. Acid extraction
Principle
Some proteins dissolve more effectively in acidic conditions.
Procedure
- Treat the powdered sample with dilute acid such as hydrochloric acid or acetic acid.
- Stir at low temperature.
- Filter or centrifuge.
- Collect the protein extract.
Example
Collagen and gelatin-related proteins may be extracted using acid treatment.
Limitation
Strong acid can denature proteins.
E. Isoelectric precipitation
Principle
Every protein has a particular pH at which its net electrical charge is zero. This pH is called the isoelectric point (pI). At this pH, protein solubility is minimum and the protein precipitates.
Procedure
- First dissolve protein in alkaline or salt solution.
- Add dilute acid slowly with stirring.
- Adjust the pH to the isoelectric point.
- Protein precipitates.
- Centrifuge and collect the precipitate.
- Wash and dry or redissolve in buffer.
Example
Soy protein is commonly precipitated near pH 4.5.
Exam line: Isoelectric precipitation is widely used to isolate proteins from plant extracts.
F. Salting-out method
Principle
At high salt concentration, water molecules preferentially hydrate salt ions. Less water remains available to keep proteins dissolved. Proteins therefore precipitate. This is called salting out.
Most commonly used salt: Ammonium sulfate.
Procedure
- Add ammonium sulfate gradually to the protein solution.
- Maintain low temperature and stir continuously.
- Allow protein to precipitate.
- Centrifuge and collect the protein precipitate.
- Dissolve the precipitate in buffer.
- Remove salt by dialysis.
Advantages
- Simple and economical
- Helps concentrate protein
- Suitable for initial protein purification
Limitation
Salt must be removed before further analysis.
G. Organic solvent precipitation
Principle
Organic solvents reduce the dielectric constant of water and remove the hydration layer around proteins, leading to precipitation.
Solvents used
Procedure
- Cool the protein solution.
- Add chilled organic solvent slowly.
- Keep the mixture cold.
- Centrifuge.
- Collect the protein precipitate.
Precaution
Use cold solvent because proteins may denature at higher temperature.
H. Extraction of membrane proteins
Membrane proteins are associated with lipid membranes and are poorly soluble in water.
Method
- Use detergents such as Triton X-100, sodium deoxycholate, or sodium dodecyl sulfate.
- Detergents dissolve membrane lipids and release membrane proteins.
Note: Some detergents can denature proteins. Therefore, mild non-ionic detergents are preferred when biological activity must be preserved.
I. Enzyme-assisted extraction
Principle
Enzymes break down cell walls or other materials that trap proteins.
Examples
- Cellulase and pectinase for plant materials
- Lysozyme for bacterial cell walls
Advantages
- Improves yield
- Can be carried out under mild conditions
- Helpful for plant and microbial samples
Factors affecting protein extraction
- pH: Determines protein charge and solubility.
- Temperature: Low temperature prevents denaturation and enzyme degradation.
- Ionic strength: Low salt may improve solubility, while high salt may precipitate proteins.
- Extraction time: Excessive extraction may cause degradation.
- Particle size: Smaller particle size improves extraction.
- Solvent-to-sample ratio: Adequate solvent increases protein recovery.
- Presence of fat and phenolic compounds: Can reduce purity and yield.
A current review notes that alkaline extraction is widely used for plant proteins, while ultrasound, enzyme treatment, high pressure, and microwave methods can enhance release from cells. See this
protein extraction review.
2. Chemistry of Proteins
Definition
Proteins are high-molecular-weight organic nitrogenous compounds made of amino acids linked by peptide bonds. They contain carbon, hydrogen, oxygen, nitrogen, and often sulfur and phosphorus.
Proteins contain approximately:
- Carbon: 50-55%
- Hydrogen: 6-7%
- Oxygen: 20-23%
- Nitrogen: 15-18%
- Sulfur: 0-3%
Amino acids
General structure
[
\text{H}_2\text{N}-\text{CH}(R)-\text{COOH}
]
An amino acid contains:
- Amino group: (-NH_2)
- Carboxyl group: (-COOH)
- Hydrogen atom
- Variable side chain: (R)
- Central alpha carbon atom
The side chain determines the nature and properties of each amino acid.
Examples
- Glycine
- Alanine
- Valine
- Leucine
- Lysine
- Arginine
- Phenylalanine
- Tyrosine
- Cysteine
- Methionine
Essential amino acids
These cannot be synthesized sufficiently by the human body and must be obtained from diet.
Examples:
- Leucine
- Isoleucine
- Valine
- Lysine
- Methionine
- Threonine
- Tryptophan
- Phenylalanine
Peptide bond
A peptide bond is the covalent bond between the carboxyl group of one amino acid and the amino group of another amino acid.
[
\text{Amino acid}_1 + \text{Amino acid}_2
\rightarrow \text{Dipeptide} + H_2O
]
The bond formed is:
[
-CO-NH-
]
- Two amino acids form a dipeptide.
- Three amino acids form a tripeptide.
- Many amino acids form a polypeptide.
- One or more polypeptide chains form a protein.
Proteins are long amino-acid chains linked by peptide bonds, as described in standard biochemistry texts.
Classification of proteins
A. Classification according to composition
1. Simple proteins
On hydrolysis, they yield only amino acids.
Examples:
- Albumins
- Globulins
- Glutelins
- Prolamins
- Histones
- Protamine
- Scleroproteins
2. Conjugated proteins
They consist of protein combined with a non-protein part called a prosthetic group.
| Type | Prosthetic group | Example |
|---|
| Glycoprotein | Carbohydrate | Mucins, immunoglobulins |
| Lipoprotein | Lipid | Plasma lipoproteins |
| Phosphoprotein | Phosphate | Casein |
| Chromoprotein | Pigment | Haemoglobin |
| Metalloprotein | Metal ion | Ferritin |
| Nucleoprotein | Nucleic acid | Ribosomes |
3. Derived proteins
These are formed by partial hydrolysis or denaturation of proteins.
Examples:
- Proteoses
- Peptones
- Peptides
- Coagulated proteins
- Denatured proteins
B. Classification according to shape
1. Fibrous proteins
- Long, thread-like molecules
- Usually insoluble in water
- Mainly structural in function
Examples:
- Collagen
- Keratin
- Elastin
- Fibroin
2. Globular proteins
- Compact and spherical molecules
- Usually soluble in water or dilute salt solutions
- Perform dynamic functions
Examples:
- Albumin
- Haemoglobin
- Enzymes
- Insulin
- Antibodies
Levels of protein structure
1. Primary structure
It is the exact sequence of amino acids in a polypeptide chain.
- Stabilized by peptide bonds.
- Determines all higher levels of protein structure.
- Even a single amino-acid change can alter protein function.
Example: In sickle-cell disease, one amino acid substitution changes haemoglobin structure.
2. Secondary structure
It is the regular folding of short sections of a polypeptide chain.
Main forms:
- Alpha helix
- Beta-pleated sheet
- Beta turns
It is stabilized mainly by hydrogen bonds between peptide-bond groups.
3. Tertiary structure
It is the overall three-dimensional folding of a single polypeptide chain.
It is stabilized by:
- Hydrogen bonds
- Ionic bonds
- Hydrophobic interactions
- Van der Waals forces
- Disulfide bonds between cysteine residues
4. Quaternary structure
It is the arrangement of two or more polypeptide subunits into one functional protein.
Examples
- Haemoglobin has four subunits.
- Many enzymes have multiple subunits.
Important properties of proteins
1. Amphoteric nature
Proteins contain both acidic and basic groups. Therefore, they can act as acids or bases.
2. Isoelectric point
The pH at which the protein has no net charge is called its isoelectric point.
At the isoelectric point:
- Solubility is minimum.
- Protein may precipitate.
- It is useful in protein separation.
3. Solubility
Protein solubility depends on:
- pH
- Salt concentration
- Temperature
- Nature of solvent
4. Denaturation
Denaturation is loss of the natural three-dimensional structure and biological activity of protein without breaking peptide bonds.
Causes
- Heat
- Strong acids or alkalis
- Alcohol and organic solvents
- Heavy metals
- Radiation
- Detergents
- Mechanical agitation
Examples
- Coagulation of egg white on heating
- Curd formation from milk by acid
5. Coagulation
Coagulation is irreversible precipitation of denatured protein.
Example: Boiling of egg albumin.
Chemical reactions and tests of proteins
| Test | Reagent/principle | Positive result |
|---|
| Biuret test | Copper sulfate in alkaline medium reacts with peptide bonds | Violet colour |
| Ninhydrin test | Reacts with free amino groups | Blue or purple colour |
| Xanthoproteic test | Nitration of aromatic amino acids | Yellow colour, becoming orange with alkali |
| Millon's test | Detects tyrosine | Red colour |
| Hopkins-Cole test | Detects tryptophan | Violet ring |
| Sakaguchi test | Detects arginine | Red colour |
| Sulfur test | Detects cysteine/cystine | Black or brown lead sulfide precipitate |
Functions of proteins
- Form body structures: collagen, keratin, elastin
- Act as enzymes
- Transport substances: haemoglobin, albumin
- Provide immunity: antibodies
- Regulate functions: peptide hormones
- Help blood clotting: fibrinogen
- Contract muscle: actin and myosin
- Maintain fluid balance and buffering action
- Supply energy when required: approximately 4 kcal/g
Short exam conclusion
Protein extraction involves cell disruption, solubilization in a suitable solvent, removal of debris, and precipitation/purification of proteins. Protein chemistry includes amino acids, peptide bonds, classification, structural levels, properties, denaturation, and chemical tests.