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lipid extraction AND Kjeldahl

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FAO food analysis Kjeldahl method lipid extraction Soxhlet Folch method

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lipid extraction methods

I read the questions as bulk powder characteristics; medicinal castor oil preparation; gelatin; antirheumatic oil; protein analysis by Kjeldahl method; lipid extraction; chemistry and analysis of lipids; natural pesticides; and chemistry of proteins.

1. Characteristics of bulk powders

Bulk powders are dry, finely divided medicinal substances supplied in multidose containers. The patient measures each dose.
Ideal characteristics
  • Uniform particle size and good flow property.
  • Chemically and physically stable.
  • Non-hygroscopic or protected from moisture.
  • Non-irritant when intended for external use.
  • Free from contamination and microbial growth.
  • Easily dispersible or soluble when meant for internal use.
  • Pleasant taste or suitably flavoured/sweetened for oral use.
  • Properly labelled with dose, method of use, and storage directions.
Advantages
  • Simple and economical to prepare.
  • More stable than liquid dosage forms.
  • Flexible dose adjustment.
  • Suitable for large doses.
Disadvantages
  • Dose may be inaccurate if measured by the patient.
  • Unsuitable for potent drugs and unpleasant-tasting drugs.
  • Moisture-sensitive powders may cake.
  • Not suitable where sterility is required.

2. Preparation of medicinal castor oil

Source: Castor oil is the fixed oil obtained from seeds of Ricinus communis (family Euphorbiaceae). Its principal fatty acid is ricinoleic acid.
Method
  1. Select mature, clean castor seeds.
  2. Remove the outer seed coat and crush the kernels.
  3. Express the oil mechanically, preferably by cold expression, to avoid decomposition.
  4. Filter or clarify the expressed oil to remove suspended particles.
  5. Purify the oil, commonly by treatment with adsorbents such as activated charcoal or bleaching earth, followed by filtration.
  6. Remove traces of moisture by gentle heating under controlled conditions.
  7. Store in well-closed, light-resistant containers.
Important note: Ricin is present mainly in the seed cake, not in properly purified castor oil. Castor oil acts as a stimulant laxative after intestinal lipases release ricinoleic acid. It should not be self-used during pregnancy because it may stimulate uterine contractions. A clinical pharmacology text also notes its intestinal conversion to ricinoleic acid and stimulant action.

3. Gelatin

Definition:
Gelatin is a protein obtained by partial hydrolysis of collagen from animal skin, bones, and connective tissue.
Types
  • Type A gelatin: Produced by acid treatment of collagen.
  • Type B gelatin: Produced by alkaline treatment of collagen.
Properties
  • Pale yellow to amber, transparent sheets, flakes, granules, or powder.
  • Odourless and almost tasteless.
  • Swells in cold water.
  • Dissolves in hot water and forms a gel on cooling.
  • It is a protein and is amphoteric in nature.
  • Gel strength depends on concentration, temperature, pH, and bloom value.
Uses
  • Hard and soft capsule shells.
  • Tablet binder and coating material.
  • Preparation of gels, jellies, suppositories, and wound dressings.
  • Stabilizer in some pharmaceutical and food products.
  • Culture media in microbiology.
Storage: Store in a dry, well-closed container because it absorbs moisture and can support microbial growth when wet.

4. Antirheumatic oil

Antirheumatic oils are external preparations used to relieve pain, stiffness, and inflammation associated with rheumatism, muscular pain, sprains, and joint pain.
Common ingredients
  • Methyl salicylate
  • Menthol
  • Camphor
  • Eucalyptus oil
  • Turpentine oil
  • Wintergreen oil
  • Sesame oil, coconut oil, or another fixed oil as a base
Preparation
  1. Measure the required base oil.
  2. Dissolve or mix volatile ingredients, such as menthol and camphor, in a small amount of suitable oil.
  3. Add methyl salicylate and other essential oils gradually with stirring.
  4. Make up to final volume with the base oil.
  5. Filter if necessary and pack in an amber, tightly closed bottle.
Use: Apply externally with gentle massage. Do not ingest. Avoid use on broken skin, near eyes, or in people allergic to salicylates.

5. Analysis of protein by the Kjeldahl method

The Kjeldahl method estimates total nitrogen in a sample. Protein content is then calculated from nitrogen content.

Principle

Protein nitrogen is converted into ammonium sulfate by digestion with concentrated sulfuric acid. On adding alkali, ammonia is liberated, distilled, absorbed in a standard acid solution, and measured by titration.

Steps

A. Digestion

  • Weigh a known amount of sample in a Kjeldahl flask.
  • Add concentrated sulfuric acid and catalyst mixture, such as potassium sulfate with copper sulfate or selenium.
  • Heat until the solution becomes clear.
  • Organic nitrogen is converted to ammonium sulfate.
[ \text{Organic nitrogen} \rightarrow (NH_4)_2SO_4 ]

B. Distillation

  • Cool the digest and dilute with water.
  • Add excess sodium hydroxide.
  • Ammonia gas is released.
[ (NH_4)_2SO_4 + 2NaOH \rightarrow 2NH_3 + Na_2SO_4 + 2H_2O ]
  • Distil the ammonia into boric acid or a known volume of standard acid.

C. Titration

  • Titrate the absorbed ammonia with standard hydrochloric acid or sulfuric acid.

Calculation

[ %N = \frac{(V_s - V_b)\times N \times 14.007 \times 100}{W \times 1000} ]
Where:
  • (V_s) = volume of acid used for sample, in mL
  • (V_b) = volume of acid used for blank, in mL
  • (N) = normality of acid
  • (W) = weight of sample in g
[ %\text{Protein} = %N \times 6.25 ]
The factor 6.25 is commonly used because proteins contain approximately 16% nitrogen. The FAO analytical method similarly describes multiplying Kjeldahl nitrogen by 6.25 to estimate crude protein.
Limitation: It measures total nitrogen, so non-protein nitrogen can cause overestimation.

6. Methods of extraction of lipids

A. Mechanical expression

  • Oil is obtained by pressing oil-containing seeds.
  • It may be cold pressing or hot pressing.
  • Used for oils such as castor, sesame, coconut, and groundnut oil.
Advantages: No solvent residue, simple method.
Disadvantage: Oil yield may be lower.

B. Solvent extraction

  • Dried and powdered material is extracted using non-polar solvents such as hexane, petroleum ether, ether, or chloroform.
  • Solvent is removed by evaporation or distillation.
Advantages: High extraction yield.
Disadvantages: Solvent handling, possible residual solvent, and possible degradation.

C. Soxhlet extraction

  1. Dry and powder the sample.
  2. Place it in a porous thimble in a Soxhlet apparatus.
  3. Heat solvent in a flask.
  4. Solvent vapour condenses and repeatedly washes the sample.
  5. The extract siphons back into the flask repeatedly.
  6. Evaporate the solvent and weigh the lipid residue.
It is a standard gravimetric method for total fat estimation. Continuous heating can oxidize heat-sensitive lipids, as described in an extraction-methods review.

D. Folch method

  • Uses chloroform:methanol in a 2:1 ratio.
  • Especially useful for extracting total lipids from animal tissues.

E. Bligh and Dyer method

  • Uses chloroform, methanol, and water.
  • Commonly used for biological samples, tissues, microorganisms, and lipid analysis.

F. Supercritical fluid extraction

  • Uses supercritical carbon dioxide.
  • Produces solvent-free extracts and is useful for heat-sensitive materials, but requires costly equipment.

7. Chemistry of lipids

Definition:
Lipids are water-insoluble or sparingly soluble organic compounds that are soluble in non-polar solvents such as ether, chloroform, benzene, and hexane.

Classification

1. Simple lipids

Esters of fatty acids with alcohols.
  • Fats and oils: Esters of fatty acids with glycerol, also called triglycerides.
  • Waxes: Esters of fatty acids with higher monohydric alcohols.

2. Compound or complex lipids

Contain fatty acids, alcohol, and additional groups.
  • Phospholipids
  • Glycolipids
  • Lipoproteins
  • Sphingolipids

3. Derived lipids

Substances formed by hydrolysis of simple and complex lipids.
  • Fatty acids
  • Glycerol
  • Sterols, such as cholesterol
  • Steroid hormones
  • Fat-soluble vitamins A, D, E, and K

Fatty acids

  • Saturated fatty acids: No double bond, for example palmitic acid and stearic acid.
  • Unsaturated fatty acids: One or more double bonds, for example oleic acid, linoleic acid, and linolenic acid.
  • Essential fatty acids: Linoleic acid and alpha-linolenic acid must be supplied in the diet.

Important reactions

  • Hydrolysis: Breakdown of triglycerides into glycerol and fatty acids.
  • Saponification: Alkaline hydrolysis of fats/oils to form soap and glycerol.
  • Hydrogenation: Addition of hydrogen to unsaturated bonds.
  • Oxidation: Leads to rancidity.
  • Esterification: Fatty acids react with alcohols to form esters.

8. Natural pesticides

Natural pesticides are pest-control substances obtained from plants, microorganisms, or minerals.

Plant-derived pesticides

  • Pyrethrum: Obtained from Chrysanthemum cinerariifolium. It contains pyrethrins and acts on insect nervous systems.
  • Neem: Obtained from Azadirachta indica. Azadirachtin acts as an antifeedant, repellent, and insect growth regulator.
  • Rotenone: Obtained from roots of Derris species. It affects cellular respiration in insects.
  • Nicotine: Obtained from tobacco. It acts on nicotinic receptors but is highly toxic and restricted in many settings.
  • Essential oils: Citronella, clove, eucalyptus, and peppermint oils may have repellent or insecticidal actions.

Microbial pesticides

  • Bacillus thuringiensis (Bt): Produces proteins toxic to specific insect larvae.
  • Beauveria bassiana: Entomopathogenic fungus used against insects.
  • Nuclear polyhedrosis viruses: Used for selected agricultural insect pests.

Advantages

  • Often biodegradable.
  • Usually produce less persistent environmental residue.
  • Some have selective action.
  • Useful in integrated pest management.

Limitations

  • May act more slowly.
  • Can be degraded by sunlight and rain.
  • May require repeated application.
  • “Natural” does not mean harmless. Correct dose and safety precautions remain necessary.

9. Chemistry of proteins

Definition:
Proteins are high-molecular-weight nitrogenous organic compounds composed of amino acids linked by peptide bonds.

Amino acid structure

[ H_2N-CH(R)-COOH ]
Each amino acid has:
  • Amino group: (-NH_2)
  • Carboxyl group: (-COOH)
  • Hydrogen atom
  • Variable side chain, (R)

Peptide bond

A peptide bond forms when the carboxyl group of one amino acid reacts with the amino group of another amino acid.
[ \text{Amino acid} + \text{Amino acid} \rightarrow \text{Dipeptide} + H_2O ]

Classification of proteins

By composition
  • Simple proteins: Yield only amino acids on hydrolysis, for example albumin and globulin.
  • Conjugated proteins: Protein combined with a non-protein group, for example glycoproteins, lipoproteins, phosphoproteins, and haemoproteins.
  • Derived proteins: Products of protein denaturation or hydrolysis, for example proteoses, peptones, and peptides.
By shape
  • Fibrous proteins: Long, insoluble proteins, for example collagen, keratin, and elastin.
  • Globular proteins: Compact, generally soluble proteins, for example enzymes, albumin, and haemoglobin.

Levels of protein structure

  1. Primary structure: Amino-acid sequence.
  2. Secondary structure: Alpha-helix or beta-pleated sheet.
  3. Tertiary structure: Three-dimensional folding of one polypeptide chain.
  4. Quaternary structure: Arrangement of two or more polypeptide subunits.

Protein denaturation

Protein structure may be disrupted by heat, strong acids, alkalis, organic solvents, heavy metals, or radiation. Denaturation changes activity and solubility but usually does not break peptide bonds.

Functions

  • Enzymes and hormones
  • Structural support, such as collagen and keratin
  • Transport, such as haemoglobin and albumin
  • Immunity, such as antibodies
  • Muscle contraction, such as actin and myosin
  • Tissue repair and growth

10. Analysis of lipids, including animal-source lipids

Physical tests

  • Colour, odour, and taste.
  • Specific gravity.
  • Refractive index.
  • Melting point or solidification point.
  • Viscosity.

Chemical tests

A. Acid value

Measures free fatty acids present in fat or oil.
[ \text{Acid value} = \text{mg of KOH required to neutralize free fatty acids in 1 g of sample} ]
High acid value suggests hydrolysis or rancidity.

B. Saponification value

Measures the amount of potassium hydroxide needed to saponify 1 g of fat or oil.
[ \text{Saponification value} = \text{mg KOH needed for 1 g of fat} ]
A high value generally indicates fatty acids of shorter average chain length.

C. Iodine value

Measures the degree of unsaturation.
[ \text{Iodine value} = \text{grams of iodine absorbed by 100 g of lipid} ]
Higher iodine value indicates more double bonds.

D. Ester value

[ \text{Ester value} = \text{Saponification value} - \text{Acid value} ]

E. Peroxide value

Measures peroxide compounds formed during oxidation. A high value indicates oxidative rancidity.

F. Reichert-Meissl value

Measures volatile, water-soluble fatty acids. It is useful in testing fats such as butter.

G. Acrolein test

When fats containing glycerol are heated with potassium bisulfate, pungent acrolein is formed. This confirms glycerides.

Animal-source lipids: examples

  • Cod liver oil: Obtained from the liver of cod fish; contains vitamins A and D.
  • Shark liver oil: Contains squalene and fat-soluble vitamins.
  • Lanolin: Wool fat obtained from sheep wool; used in ointments and cosmetics.
  • Beeswax: A wax of animal origin used in ointments and creams.
  • Lard: Purified fat from pig adipose tissue.
  • Butter fat: Milk fat containing triglycerides and volatile fatty acids.
Storage of lipids: Protect from air, heat, moisture, and light. Use airtight, well-filled amber containers to reduce rancidity.

Explain about extraction of protein and chemistry of proteins for exam point of view

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protein extraction methods

1. Extraction of Proteins

Definition

Protein extraction is the process of isolating proteins from plant, animal, microbial, or tissue samples in a soluble and usable form for analysis, purification, or pharmaceutical/food use.

Principle

Proteins differ in solubility according to their:
  • pH
  • Ionic strength
  • Temperature
  • Solvent composition
  • Charge and isoelectric point
Extraction aims to break cells/tissues, dissolve the proteins in a suitable medium, and separate them from insoluble materials such as cell debris, fat, starch, and nucleic acids.

General steps in protein extraction

1. Selection and preparation of sample

  • Select fresh material such as seeds, legumes, animal tissue, milk, egg, microorganisms, etc.
  • Wash if necessary.
  • Dry or keep cold, depending on the sample.
  • Grind, homogenize, or powder the material to increase surface area.

2. Removal of unwanted material

Plant materials may contain fats, pigments, tannins, and carbohydrates. These can interfere with extraction.
  • Defatting may be done with petroleum ether, hexane, or acetone.
  • In animal tissues, fat and connective tissue are removed.
  • Keep the sample cold to prevent protein degradation by enzymes.

3. Cell disruption

Proteins inside cells cannot be extracted unless the cell wall or cell membrane is broken.
Methods
  • Grinding with mortar and pestle
  • Homogenization in a blender/homogenizer
  • Freeze-thaw cycles
  • Sonication
  • French press or high-pressure homogenization
  • Enzyme treatment, for example lysozyme for bacteria
  • Mild detergents for membrane proteins

4. Extraction using suitable solvent/buffer

The sample is mixed with an extraction medium.
Common extraction media:
  • Distilled water
  • Salt solution, for example sodium chloride
  • Buffer solution, such as phosphate buffer or Tris buffer
  • Dilute alkali, for example sodium hydroxide
  • Dilute acid
  • Detergent-containing buffer for membrane proteins
The mixture is stirred and kept at a suitable temperature, usually cold conditions, for a fixed period.

5. Centrifugation or filtration

  • Centrifuge the mixture.
  • Insoluble material forms a pellet.
  • The protein-containing liquid above it is called the supernatant.
  • The supernatant is collected for further purification.

6. Protein precipitation

Protein may be separated from the extract by precipitation.

7. Collection and purification

  • Collect the precipitated protein by centrifugation.
  • Redissolve it in a suitable buffer.
  • Further purify by dialysis, chromatography, or electrophoresis if required.

Important methods of protein extraction

A. Water extraction

Principle

Water-soluble proteins dissolve in water.

Procedure

  1. Powder the sample.
  2. Mix with cold distilled water.
  3. Stir for a suitable time.
  4. Filter or centrifuge.
  5. Collect the aqueous protein extract.

Examples

  • Albumins from seeds
  • Some whey proteins from milk

Advantages

  • Simple
  • Cheap
  • No toxic solvent is required

Limitation

Only water-soluble proteins are extracted effectively.

B. Salt extraction or salting-in

Principle

At low concentrations, neutral salts increase protein solubility. This is called salting-in.
Common salts:
  • Sodium chloride
  • Ammonium sulfate
  • Sodium sulfate

Procedure

  1. Homogenize the sample in dilute salt solution.
  2. Stir under cold conditions.
  3. Centrifuge.
  4. Collect the supernatant containing solubilized protein.

Use

Useful for extraction of globulins and some myofibrillar proteins.

C. Alkaline extraction

Principle

Many plant proteins are more soluble at alkaline pH because they gain a net negative charge and repel one another.

Procedure

  1. Defat and powder the material, such as soybean or groundnut meal.
  2. Add dilute sodium hydroxide, usually at alkaline pH.
  3. Stir for a fixed time.
  4. Centrifuge or filter.
  5. Collect the alkaline extract containing protein.
  6. Adjust the pH to the protein's isoelectric point to precipitate the protein.

Advantages

  • High extraction yield
  • Commonly used for plant proteins

Limitation

Strong alkali or prolonged treatment can damage protein structure and reduce nutritional quality.

D. Acid extraction

Principle

Some proteins dissolve more effectively in acidic conditions.

Procedure

  1. Treat the powdered sample with dilute acid such as hydrochloric acid or acetic acid.
  2. Stir at low temperature.
  3. Filter or centrifuge.
  4. Collect the protein extract.

Example

Collagen and gelatin-related proteins may be extracted using acid treatment.

Limitation

Strong acid can denature proteins.

E. Isoelectric precipitation

Principle

Every protein has a particular pH at which its net electrical charge is zero. This pH is called the isoelectric point (pI). At this pH, protein solubility is minimum and the protein precipitates.

Procedure

  1. First dissolve protein in alkaline or salt solution.
  2. Add dilute acid slowly with stirring.
  3. Adjust the pH to the isoelectric point.
  4. Protein precipitates.
  5. Centrifuge and collect the precipitate.
  6. Wash and dry or redissolve in buffer.

Example

Soy protein is commonly precipitated near pH 4.5.
Exam line: Isoelectric precipitation is widely used to isolate proteins from plant extracts.

F. Salting-out method

Principle

At high salt concentration, water molecules preferentially hydrate salt ions. Less water remains available to keep proteins dissolved. Proteins therefore precipitate. This is called salting out.
Most commonly used salt: Ammonium sulfate.

Procedure

  1. Add ammonium sulfate gradually to the protein solution.
  2. Maintain low temperature and stir continuously.
  3. Allow protein to precipitate.
  4. Centrifuge and collect the protein precipitate.
  5. Dissolve the precipitate in buffer.
  6. Remove salt by dialysis.

Advantages

  • Simple and economical
  • Helps concentrate protein
  • Suitable for initial protein purification

Limitation

Salt must be removed before further analysis.

G. Organic solvent precipitation

Principle

Organic solvents reduce the dielectric constant of water and remove the hydration layer around proteins, leading to precipitation.
Solvents used
  • Ethanol
  • Acetone
  • Methanol

Procedure

  1. Cool the protein solution.
  2. Add chilled organic solvent slowly.
  3. Keep the mixture cold.
  4. Centrifuge.
  5. Collect the protein precipitate.

Precaution

Use cold solvent because proteins may denature at higher temperature.

H. Extraction of membrane proteins

Membrane proteins are associated with lipid membranes and are poorly soluble in water.

Method

  • Use detergents such as Triton X-100, sodium deoxycholate, or sodium dodecyl sulfate.
  • Detergents dissolve membrane lipids and release membrane proteins.
Note: Some detergents can denature proteins. Therefore, mild non-ionic detergents are preferred when biological activity must be preserved.

I. Enzyme-assisted extraction

Principle

Enzymes break down cell walls or other materials that trap proteins.
Examples
  • Cellulase and pectinase for plant materials
  • Lysozyme for bacterial cell walls

Advantages

  • Improves yield
  • Can be carried out under mild conditions
  • Helpful for plant and microbial samples

Factors affecting protein extraction

  1. pH: Determines protein charge and solubility.
  2. Temperature: Low temperature prevents denaturation and enzyme degradation.
  3. Ionic strength: Low salt may improve solubility, while high salt may precipitate proteins.
  4. Extraction time: Excessive extraction may cause degradation.
  5. Particle size: Smaller particle size improves extraction.
  6. Solvent-to-sample ratio: Adequate solvent increases protein recovery.
  7. Presence of fat and phenolic compounds: Can reduce purity and yield.
A current review notes that alkaline extraction is widely used for plant proteins, while ultrasound, enzyme treatment, high pressure, and microwave methods can enhance release from cells. See this protein extraction review.

2. Chemistry of Proteins

Definition

Proteins are high-molecular-weight organic nitrogenous compounds made of amino acids linked by peptide bonds. They contain carbon, hydrogen, oxygen, nitrogen, and often sulfur and phosphorus.
Proteins contain approximately:
  • Carbon: 50-55%
  • Hydrogen: 6-7%
  • Oxygen: 20-23%
  • Nitrogen: 15-18%
  • Sulfur: 0-3%

Amino acids

General structure

[ \text{H}_2\text{N}-\text{CH}(R)-\text{COOH} ]
An amino acid contains:
  • Amino group: (-NH_2)
  • Carboxyl group: (-COOH)
  • Hydrogen atom
  • Variable side chain: (R)
  • Central alpha carbon atom
The side chain determines the nature and properties of each amino acid.

Examples

  • Glycine
  • Alanine
  • Valine
  • Leucine
  • Lysine
  • Arginine
  • Phenylalanine
  • Tyrosine
  • Cysteine
  • Methionine

Essential amino acids

These cannot be synthesized sufficiently by the human body and must be obtained from diet.
Examples:
  • Leucine
  • Isoleucine
  • Valine
  • Lysine
  • Methionine
  • Threonine
  • Tryptophan
  • Phenylalanine

Peptide bond

A peptide bond is the covalent bond between the carboxyl group of one amino acid and the amino group of another amino acid.
[ \text{Amino acid}_1 + \text{Amino acid}_2 \rightarrow \text{Dipeptide} + H_2O ]
The bond formed is:
[ -CO-NH- ]
  • Two amino acids form a dipeptide.
  • Three amino acids form a tripeptide.
  • Many amino acids form a polypeptide.
  • One or more polypeptide chains form a protein.
Proteins are long amino-acid chains linked by peptide bonds, as described in standard biochemistry texts.

Classification of proteins

A. Classification according to composition

1. Simple proteins

On hydrolysis, they yield only amino acids.
Examples:
  • Albumins
  • Globulins
  • Glutelins
  • Prolamins
  • Histones
  • Protamine
  • Scleroproteins

2. Conjugated proteins

They consist of protein combined with a non-protein part called a prosthetic group.
TypeProsthetic groupExample
GlycoproteinCarbohydrateMucins, immunoglobulins
LipoproteinLipidPlasma lipoproteins
PhosphoproteinPhosphateCasein
ChromoproteinPigmentHaemoglobin
MetalloproteinMetal ionFerritin
NucleoproteinNucleic acidRibosomes

3. Derived proteins

These are formed by partial hydrolysis or denaturation of proteins.
Examples:
  • Proteoses
  • Peptones
  • Peptides
  • Coagulated proteins
  • Denatured proteins

B. Classification according to shape

1. Fibrous proteins

  • Long, thread-like molecules
  • Usually insoluble in water
  • Mainly structural in function
Examples:
  • Collagen
  • Keratin
  • Elastin
  • Fibroin

2. Globular proteins

  • Compact and spherical molecules
  • Usually soluble in water or dilute salt solutions
  • Perform dynamic functions
Examples:
  • Albumin
  • Haemoglobin
  • Enzymes
  • Insulin
  • Antibodies

Levels of protein structure

1. Primary structure

It is the exact sequence of amino acids in a polypeptide chain.
  • Stabilized by peptide bonds.
  • Determines all higher levels of protein structure.
  • Even a single amino-acid change can alter protein function.
Example: In sickle-cell disease, one amino acid substitution changes haemoglobin structure.

2. Secondary structure

It is the regular folding of short sections of a polypeptide chain.
Main forms:
  • Alpha helix
  • Beta-pleated sheet
  • Beta turns
It is stabilized mainly by hydrogen bonds between peptide-bond groups.

3. Tertiary structure

It is the overall three-dimensional folding of a single polypeptide chain.
It is stabilized by:
  • Hydrogen bonds
  • Ionic bonds
  • Hydrophobic interactions
  • Van der Waals forces
  • Disulfide bonds between cysteine residues

4. Quaternary structure

It is the arrangement of two or more polypeptide subunits into one functional protein.
Examples
  • Haemoglobin has four subunits.
  • Many enzymes have multiple subunits.

Important properties of proteins

1. Amphoteric nature

Proteins contain both acidic and basic groups. Therefore, they can act as acids or bases.

2. Isoelectric point

The pH at which the protein has no net charge is called its isoelectric point.
At the isoelectric point:
  • Solubility is minimum.
  • Protein may precipitate.
  • It is useful in protein separation.

3. Solubility

Protein solubility depends on:
  • pH
  • Salt concentration
  • Temperature
  • Nature of solvent

4. Denaturation

Denaturation is loss of the natural three-dimensional structure and biological activity of protein without breaking peptide bonds.
Causes
  • Heat
  • Strong acids or alkalis
  • Alcohol and organic solvents
  • Heavy metals
  • Radiation
  • Detergents
  • Mechanical agitation
Examples
  • Coagulation of egg white on heating
  • Curd formation from milk by acid

5. Coagulation

Coagulation is irreversible precipitation of denatured protein.
Example: Boiling of egg albumin.

Chemical reactions and tests of proteins

TestReagent/principlePositive result
Biuret testCopper sulfate in alkaline medium reacts with peptide bondsViolet colour
Ninhydrin testReacts with free amino groupsBlue or purple colour
Xanthoproteic testNitration of aromatic amino acidsYellow colour, becoming orange with alkali
Millon's testDetects tyrosineRed colour
Hopkins-Cole testDetects tryptophanViolet ring
Sakaguchi testDetects arginineRed colour
Sulfur testDetects cysteine/cystineBlack or brown lead sulfide precipitate

Functions of proteins

  • Form body structures: collagen, keratin, elastin
  • Act as enzymes
  • Transport substances: haemoglobin, albumin
  • Provide immunity: antibodies
  • Regulate functions: peptide hormones
  • Help blood clotting: fibrinogen
  • Contract muscle: actin and myosin
  • Maintain fluid balance and buffering action
  • Supply energy when required: approximately 4 kcal/g

Short exam conclusion

Protein extraction involves cell disruption, solubilization in a suitable solvent, removal of debris, and precipitation/purification of proteins. Protein chemistry includes amino acids, peptide bonds, classification, structural levels, properties, denaturation, and chemical tests.

Bark drug powder charectesti s

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Powder Characteristics of Bark Drugs

Definition

Bark drugs are crude drugs obtained from the outer protective tissues of stems, branches, or roots of plants. When bark is powdered, its identity is confirmed by organoleptic characters and powder microscopy.
Examples: Cinchona, Cinnamon, Cascara, Ashoka, Neem, Arjuna.

1. Organoleptic characters of bark powder

These are observed by the senses:
  • Colour: Brown, reddish-brown, yellowish-brown, greyish-brown, etc.
  • Odour: Characteristic, aromatic, faint, or odourless.
  • Taste: Bitter, astringent, pungent, sweetish, or aromatic.
  • Texture: Coarse, fibrous, gritty, or fine.
  • Fracture: Short, fibrous, splintery, or granular.
Example:
Cinchona bark powder is brownish and very bitter due to quinoline alkaloids.

2. Microscopic powder characteristics

The following diagnostic elements may be seen under a microscope. Their presence differs with each bark drug.

A. Cork cells

  • Found in the outer bark.
  • Brown, polygonal, rectangular, or tabular cells.
  • Cell walls may be suberized and sometimes thickened.
  • Usually arranged in rows.

B. Cortical parenchyma

  • Thin-walled, polygonal or rounded living cells.
  • May contain starch grains, tannins, calcium oxalate crystals, or other cell contents.

C. Phloem parenchyma

  • Thin-walled cells of the inner bark.
  • May contain tannins, starch, oil droplets, mucilage, or crystals.

D. Sieve tubes

  • Elongated conducting cells of phloem.
  • May be seen with companion cells and sieve plates in some bark powders.

E. Phloem fibres or bast fibres

  • Long, narrow, thick-walled fibres.
  • Usually lignified.
  • Give mechanical strength to bark.
  • May occur singly or in groups.

F. Stone cells or sclereids

  • Thick-walled, hard, lignified cells.
  • Their shape may be isodiametric, elongated, branched, or irregular.
  • They have narrow lumen and visible pits.
  • Commonly important diagnostic features of bark powders.

G. Medullary rays

  • Radially elongated parenchymatous cells.
  • May contain starch or crystals.
  • Seen as bands or strips in bark fragments.

H. Vessels

  • Fragments of xylem vessels may occur in bark powder.
  • Types include spiral, annular, scalariform, reticulate, and pitted vessels.
  • Vessels are often lignified.

I. Calcium oxalate crystals

These may be:
  • Prismatic crystals
  • Acicular crystals or raphides
  • Rosette crystals
  • Cluster crystals or druses
  • Crystal sand
Their type, size, and location are useful for identification.

J. Starch grains

  • Simple or compound grains.
  • May be round, oval, or polygonal.
  • Hilum may be central or eccentric.
  • Detected using iodine solution, which gives a blue colour.

K. Tannin-containing cells

  • Brownish-red contents may be present in cells.
  • Common in astringent bark drugs.
  • Ferric chloride test gives a blue-black or greenish-black colour depending on tannin type.

L. Secretory cells, oil cells, or resin ducts

  • Some bark drugs contain volatile oil, resin, gum, or mucilage.
  • These structures can aid identification.

General powder-character table

Powder characterIdentification feature
Cork cellsBrown, rectangular/polygonal, suberized
Phloem fibresLong, thick-walled, lignified
Stone cellsThick-walled sclereids with pits
Phloem parenchymaThin-walled cells, may contain tannin or starch
Medullary raysRadial rows or strips of cells
VesselsSpiral, pitted, reticulate, or scalariform
Starch grainsSimple/compound, blue with iodine
Calcium oxalatePrismatic, cluster, rosette, or needle-shaped
Tannin cellsBrown contents, positive ferric chloride test
Oil/resin cellsSecretory contents or ducts
A pharmacognostic bark study reports cortex cells, sieve tubes, calcium oxalate crystals, and lignified fibres as useful powder-microscopic features of bark materials in this bark microscopy report.

Short answer for exam

Powder characteristics of bark drugs:
Bark powder is identified by its colour, odour, taste, texture, and microscopic characters. Important diagnostic features include cork cells, cortical and phloem parenchyma, sieve tubes, phloem fibres, stone cells, medullary rays, lignified vessels, starch grains, calcium oxalate crystals, tannin cells, and secretory cells or resin ducts. The type and arrangement of these structures help in identification and detection of adulteration of bark drugs.
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