Explain question number 44-51 to in full detail with the exam-oriented MBBS with flow chart and diagram only
Explain question number 44-51 to in full detail with the exam-oriented MBBS with flow chart and diagram only
I donβt want ppt
ACETYL CoA (2 units)
β [Thiolase]
ACETOACETYL CoA
β [HMG CoA Synthase - cytosolic]
HMG CoA (3-Hydroxy-3-methylglutaryl CoA)
β [HMG CoA REDUCTASE] β β
RATE-LIMITING STEP
β (2 NADPH consumed, irreversible)
MEVALONATE (6C)
β [Mevalonate kinase β ATP]
MEVALONATE-5-PHOSPHATE
β [Phosphomevalonate kinase β ATP]
MEVALONATE-5-PYROPHOSPHATE
β [Decarboxylase β COβ, ATP]
ISOPENTENYL PYROPHOSPHATE (IPP, 5C)
β
GERANYL-PP (10C)
β [+ another IPP]
FARNESYL-PP (15C)
β [2 Γ Farnesyl-PP + NADPH β Squalene synthase]
SQUALENE (30C, linear)
β [Squalene monooxygenase + Oβ]
SQUALENE EPOXIDE
β [Cyclization - Lanosterol synthase]
LANOSTEROL (first sterol, 30C)
β [19 enzyme steps, loss of 3C β COβ]
CHOLESTEROL (27C)
HIGH INTRACELLULAR CHOLESTEROL
β
ββββββββββββββββββ΄βββββββββββββββββββ
βΌ βΌ
Inhibits HMG CoA Reductase Activates ACAT
(transcription β + degradation β) (esterifies cholesterol
for storage)
βΌ
Blocks SREBP-2 activation
(SCAP-INSIG retain SREBP in ER)
βΌ
No LDLR gene transcription
(LDL receptors β on cell surface)
LOW INTRACELLULAR CHOLESTEROL
β
ββββββββββββββββββ΄βββββββββββββββββββ
βΌ βΌ
INSIG releases SCAP-SREBP-2 HMG CoA Reductase
β phosphorylation β
SREBP-2 enters nucleus (inactive form β)
β
LDL Receptor gene + HMG CoA
Reductase gene β transcribed β
| Hormone | Effect on HMG CoA Reductase |
|---|---|
| Insulin | β (activates via phosphatase) |
| Glucagon | β (activates AMPK β phosphorylates/inactivates) |
| Thyroid hormone | β synthesis + β LDL-R expression |
| Estrogen | β LDL-R β β LDL-cholesterol |
Competitive inhibitors of HMG CoA Reductase β β cholesterol synthesis β β LDL-R expression β β plasma LDL
CAUSES:
βββββββββββββββββββββββββββββββββββββββ
β PRIMARY (Genetic) β
β β’ Familial Hypercholesterolemia β
β - LDL-R mutation β
β - Defective ApoB-100 β
β - PCSK9 gain-of-function β
β β’ Familial Combined Hyperlipidemia β
β β
β SECONDARY (Acquired) β
β β’ Hypothyroidism β
β β’ Nephrotic syndrome β
β β’ Diabetes mellitus β
β β’ Obesity β
β β’ Obstructive jaundice β
βββββββββββββββββββββββββββββββββββββββ
β
CONSEQUENCES:
β’ Atherosclerosis β CAD, stroke
β’ Xanthomas (tendon, skin)
β’ Xanthelasma (periorbital)
β’ Arcus corneae (< 45 yr = pathological)
TREATMENT:
Statins β Bile acid sequestrants β
Ezetimibe β PCSK9 inhibitors
CAUSES:
β’ Abetalipoproteinemia (no ApoB β no VLDL/chylomicrons)
β’ Hyperthyroidism
β’ Malabsorption
β’ Liver disease (cirrhosis)
β’ Tangier disease (β HDL)
CONSEQUENCES:
β’ Fat-soluble vitamin deficiency (A, D, E, K)
β’ Acanthocytosis (spiny RBCs)
β’ Neurological defects
β’ Retinitis pigmentosa
CHOLESTEROL (27C)
β
ββββ BILE ACIDS (major route of elimination)
β β
β Rate-limiting enzyme: 7-Ξ±-Hydroxylase (CYP7A1)
β [SER of liver, CYP enzyme]
β Regulated: β by Cholesterol (via LXR)
β β by Bile acids (via FXR/BAR)
β β
β PRIMARY BILE ACIDS:
β β’ Cholic acid (3-OH groups)
β β’ Chenodeoxycholic acid (2-OH groups)
β β
β Conjugated with Glycine or Taurine
β (Ratio Glycine:Taurine = 3:1)
β β
β Glycocholate, Taurocholate, etc.
β β
β Secreted into bile
β β
β In intestine β Bacterial deconjugation
β β
β SECONDARY BILE ACIDS:
β β’ Deoxycholic acid (from cholic)
β β’ Lithocholic acid (from chenodeoxycholic)
β β
β Enterohepatic circulation (95% reabsorbed)
β Only 5% excreted in feces
β
ββββ STEROID HORMONES
β (Glucocorticoids, Mineralocorticoids,
β Sex hormones, Vitamin D)
β
ββββ Excreted unchanged in bile
TYPES OF GALLSTONES:
ββββββββββββββββββββ¬βββββββββββββββββ¬ββββββββββββββββββ
β CHOLESTEROL β PIGMENT β MIXED β
β STONES (80%) β STONES (20%) β β
ββββββββββββββββββββΌβββββββββββββββββΌββββββββββββββββββ€
β β’ Pale yellow β β’ Black/Brown β Most common in β
β β’ Single, large β β’ Multiple β Western world β
β β’ Radiolucent β β’ Radioopaque β β
β β’ High chol in β β’ Bilirubin β β
β bile β calcium saltsβ β
ββββββββββββββββββββ΄βββββββββββββββββ΄ββββββββββββββββββ
MECHANISM (Cholesterol stones):
β Bile salts OR β Cholesterol
β
BILE SUPERSATURATED WITH CHOLESTEROL
β
Cholesterol crystals nucleate
β
Stone formation
RISK FACTORS ("5 F's"):
Fat β’ Female β’ Forty β’ Fertile β’ Fair
COMPLICATIONS:
Biliary colic β Acute cholecystitis β
Choledocholithiasis β Cholangitis β Pancreatitis
EXCESS ENERGY INTAKE β OBESITY (BMI > 30)
β
ββββββββββββΌβββββββββββ¬βββββββββββββββ
βΌ βΌ βΌ βΌ
β Free FA β Adipokines β Visceral β Leptin
in blood (β Adiponectin fat resistance
β β TNF-Ξ±,IL-6) β β
βΌ β βΌ βΌ
β Fatty acid βΌ β Portal FFA Appetite
deposition Inflammation to liver dysregulation
in liver/ (systemic) β
muscle β βΌ
β βΌ FATTY LIVER (NAFLD/NASH)
βΌ INSULIN
β TG, RESISTANCE
β HDL β
β βΌ
ββββββββ TYPE 2 DM
β
βΌ
HYPERGLYCEMIA
CENTRAL OBESITY (Waist β > 90cm, β > 80cm in Asians)
PLUS any TWO of:
βββββββββββββββββββββββββββββββββββββββββββ
β β Triglycerides: β₯ 150 mg/dL β
β β HDL: < 40 (β) / < 50 (β) mg/dL β
β β BP: β₯ 130/85 mmHg β
β β Fasting glucose: β₯ 100 mg/dL β
βββββββββββββββββββββββββββββββββββββββββββ
PATHOPHYSIOLOGY FLOWCHART:
Obesity β Insulin Resistance
β
βββββββββββ΄βββββββββββ
βΌ βΌ
β Hepatic β VLDL-TG
glucose output secretion
β β
βΌ βΌ
Hyperglycemia Dyslipidemia
β β
βββββββββββ¬βββββββββββ
βΌ
Endothelial dysfunction
βΌ
ATHEROSCLEROSIS β CVD
MEMBRANE PHOSPHOLIPIDS (Arachidonic acid at C2)
β
β [Phospholipase Aβ] β triggered by CaΒ²βΊ, injury
β β
INHIBITED by Corticosteroids (β Lipocortin)
βΌ
ARACHIDONIC ACID (20C, Ο-6 PUFA)
β β
βΌ βΌ
COX PATHWAY LIPOXYGENASE PATHWAY
(Cyclooxygenase) (5-LOX)
β β
ββββββ΄ββββ βΌ
βΌ βΌ 5-HPETE
COX-1 COX-2 β
(constitutive) (inducible) βΌ
β β LEUKOTRIENES
ββββββ¬ββββ LTAβ β LTBβ (chemotaxis)
βΌ LTAβ β LTCβ, LTDβ, LTEβ
PGGβ (bronchoconstriction)
β
[Peroxidase + GSH]
βΌ
PGHβ (unstable intermediate)
β
ββββββΌβββββ¬ββββββββββ
βΌ βΌ βΌ βΌ
PGIβ PGEβ PGFβΞ± TXAβ
(PGIβ = Prostacyclin)
| Eicosanoid | Source | Key Actions |
|---|---|---|
| PGEβ | Most tissues | β Pain threshold, β fever, β gastric acid, β mucus |
| PGIβ (Prostacyclin) | Vascular endothelium | Vasodilation, β platelet aggregation |
| TXAβ (Thromboxane) | Platelets | Vasoconstriction, β platelet aggregation |
| PGFβΞ± | Uterus, lungs | Uterine contraction, bronchoconstriction |
| LTBβ | Neutrophils | Chemotaxis, inflammation |
| LTCβ, LTDβ, LTEβ | Mast cells, basophils | Bronchoconstriction (SRS-A), β mucus |
β PGIβ vs TXAβ = physiological antagonists - critical exam point!
ASPIRIN:
β Irreversibly acetylates COX-1 & COX-2
β β TXAβ (anti-platelet, anticoagulant)
β β PGs (analgesic, antipyretic, anti-inflammatory)
NSAIDs (Ibuprofen, Naproxen):
β Reversibly inhibit COX-1 & COX-2
β Risk: Peptic ulcer (β PGEβ gastroprotection)
Selective COX-2 inhibitors (Celecoxib):
β Spares COX-1 β β GI side effects
β Risk: β thrombosis (β PGIβ, TXAβ preserved)
Corticosteroids (Dexamethasone):
β Induce Lipocortin β inhibit Phospholipase Aβ
β β ALL eicosanoids
5-LOX inhibitors (Zileuton):
β β Leukotriene synthesis β used in asthma
Leukotriene receptor antagonists (Montelukast):
β Block LTDβ receptor β used in asthma, allergic rhinitis
AMINO ACIDS (from protein catabolism)
β
ββββββ΄βββββββββββββββββββββββ
βΌ βΌ
TRANSAMINATION OXIDATIVE DEAMINATION
(Aminotransferases) (Glutamate Dehydrogenase)
β β
β Amino group β Ξ±-KG β Glutamate β Ξ±-KG + NHβ
β β
GLUTAMATE FREE NHβ
β β
βββββββββββββββββββββββββββββ
βΌ
GLUTAMINE (non-toxic transport form)
[Glutamine synthetase, ATP-requiring]
βΌ
Transported to LIVER
Ξ±-AMINO ACID + Ξ±-KETO ACID
β [Aminotransferase + PLP (Vit Bβ)]
Ξ±-KETO ACID + Ξ±-AMINO ACID
Key enzymes:
β’ ALT (GPT): Alanine + Ξ±-KG β Pyruvate + Glutamate
[Liver specific β β in liver disease]
β’ AST (GOT): Aspartate + Ξ±-KG β OAA + Glutamate
[Liver + cardiac β β in MI and liver disease]
Coenzyme: Pyridoxal Phosphate (PLP) β Vitamin Bβ
Mechanism: PING-PONG (bi-bi) mechanism
GLUTAMATE
β [Glutamate Dehydrogenase (GDH), mitochondria]
β Cofactor: NADβΊ or NADPβΊ
Ξ±-KETOGLUTARATE + NHβ + NADH
Regulation of GDH:
ACTIVATED by: ADP, Leucine, GDP
INHIBITED by: ATP, GTP, NADH (energy-rich state)
MUSCLE & PERIPHERAL TISSUES
β
βββββββββ΄βββββββββββββ
βΌ βΌ
GLUTAMINE ROUTE ALANINE ROUTE
(brain, muscle, (muscle via
intestine) glucose-alanine cycle)
β β
NHβ + Glutamate Pyruvate + NHβ
β [Glutamine β [ALT + PLP]
synthetase] ALANINE
GLUTAMINE β
β β
βββββββββββββββββββββββ
β Portal vein
LIVER
β
UREA CYCLE
β
Urea β Kidney β Urine
β Brain removes NHβ primarily via glutamine synthetase (no urea cycle in brain) β Intestinal bacteria generate NHβ from urea β enters portal blood
MITOCHONDRIAL MATRIX
NHβ + COβ + 2 ATP
β
βΌ [CPS-I + N-Acetylglutamate (NAG) as activator]
CARBAMOYL PHOSPHATE
β
βΌ [OTC - Ornithine Transcarbamylase]
ORNITHINE + Carbamoyl-POβ β CITRULLINE
β
[Antiporter] β exits mitochondria
β
βββββββββββββββββββββ CYTOSOL ββββββββββββββββββ
β
ASPARTATE + CITRULLINE β
β [Argininosuccinate Synthetase + ATP]
βΌ
ARGININOSUCCINATE
β [Argininosuccinate Lyase]
βΌ
ARGININE + FUMARATE
β β
β Fumarate β Malate β OAA β Aspartate
β (links urea cycle to TCA)
βΌ [Arginase (Liver)]
ORNITHINE + UREA
β β
β βΌ
re-enters UREA in blood (BUN)
mitochondria β
Kidney β Urine
KEY REGULATOR: N-ACETYLGLUTAMATE (NAG)
β’ Activates CPS-I (rate-limiting enzyme)
β’ NAG made by NAG Synthase
β’ NAG Synthase activated by: Arginine, high protein intake
SUBSTRATE SUPPLY regulation:
β’ High protein diet β β urea cycle enzymes (induction)
β’ Starvation β β enzyme activity (more AA catabolism)
HORMONES:
β’ Glucagon β β urea cycle (more gluconeogenesis β more AA used)
β’ Insulin β β urea cycle
ββββββββββββββββββββ¬ββββββββββββββββββββ¬βββββββββββββββββββ
β ENZYME DEFECT β ACCUMULATED β KEY FEATURE β
ββββββββββββββββββββΌββββββββββββββββββββΌβββββββββββββββββββ€
β CPS-I β NHβ β β No orotic acid β
ββββββββββββββββββββΌββββββββββββββββββββΌβββββββββββββββββββ€
β OTC (X-linked, β NHβ β, Orotic β β Orotic acid β
β most common) β acid β β in urine β
β
ββββββββββββββββββββΌββββββββββββββββββββΌβββββββββββββββββββ€
β Arg-succinate β Citrulline β β Citrullinemia β
β Synthetase β β β
ββββββββββββββββββββΌββββββββββββββββββββΌβββββββββββββββββββ€
β Arg-succinate β Argininosuccinate β Argininosuccinic β
β Lyase β in urine β aciduria β
ββββββββββββββββββββΌββββββββββββββββββββΌβββββββββββββββββββ€
β Arginase β Arginine β β Spastic diplegia β
ββββββββββββββββββββΌββββββββββββββββββββΌβββββββββββββββββββ€
β NAG Synthase β NHβ β β Responds to β
β β β Carglumic acid β
ββββββββββββββββββββ΄ββββββββββββββββββββ΄βββββββββββββββββββ
SYMPTOMS of Hyperammonemia:
Tremors β Slurred speech β Somnolence β
Vomiting β Cerebral edema β Coma β Death
TREATMENT:
β’ Low protein diet
β’ Sodium benzoate (β hippurate, excretes 1N)
β’ Sodium phenylbutyrate (β phenylacetylglutamine, excretes 2N)
β’ Arginine/Citrulline supplementation
β’ Lactulose (β intestinal NHβ absorption)
β’ Liver transplantation
SOURCES OF GLYCINE:
Serine βββ GLYCINE βββ Threonine
Glyoxylate Choline
(via transamination)
GLYCINE (simplest amino acid, non-essential)
β
ββββββΌβββββββββ¬βββββββββββ¬βββββββββββ¬ββββββββββββββ
βΌ βΌ βΌ βΌ βΌ βΌ
SERINE BILE CREATINE GLUTATHIONE HEME PURINE
ACIDS (+ Arg, (+ Glu, SYNTHESIS SYNTHESIS
Met) Cys) (succinyl (C4, C5
CoA) of ring)
β
GLYCINE CONJUGATION:
β’ Benzoate + Glycine β HIPPURATE (excreted in urine)
β’ Bile acids + Glycine β Glycocholic acid
CATABOLISM:
Glycine β [Glycine decarboxylase complex - 4 proteins]
β COβ + NHβ + CHβ=THF (methylene-THF)
β feeds one-carbon pool
Glycine β Serine [Serine hydroxymethyltransferase + THF + Vit Bβ]
βββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
β 1. NON-KETOTIC HYPERGLYCINEMIA (NKH) β
β β’ Defect: Glycine decarboxylase complex (P,H,T,L) β
β β’ Accumulation: Glycine in blood + CSF β
β β’ Features: Neonatal seizures, hypotonia, apnea β
β β’ CSF:Plasma glycine ratio > 0.08 (diagnostic) β
β β’ Neonatal lethal form most common β
βββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
βββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
β 2. PRIMARY HYPEROXALURIA TYPE 1 (PH1) β
β β’ Defect: Alanine-glyoxylate aminotransferase (AGT) β
β β’ Glyoxylate β Oxalate (instead of glycine) β
β β’ Features: Calcium oxalate kidney stones, β
β nephrocalcinosis, renal failure β
β β’ Organs: Liver peroxisomal enzyme β
βββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
βββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
β 3. SARCOSINEMIA β
β β’ Defect: Sarcosine dehydrogenase β
β β’ Sarcosine (N-methylglycine) accumulates β
β β’ Relatively benign β
βββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
βββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
β 4. IMINOGLYCINURIA β
β β’ Defect: Shared renal transporter for β
β Glycine + Proline + Hydroxyproline β
β β’ Benign condition - found on urine analysis β
βββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
STEP 1 (Kidney):
ARGININE + GLYCINE
β [Transamidinase / Glycine amidinotransferase]
GUANIDINOACETATE + ORNITHINE
STEP 2 (Liver):
GUANIDINOACETATE + S-Adenosylmethionine (SAM)
β [Guanidinoacetate methyltransferase]
CREATINE + S-Adenosylhomocysteine (SAH)
β
β [Creatine kinase, in muscle]
CREATINE + ATP β PHOSPHOCREATINE (PCr) + ADP
β
β [Non-enzymatic, spontaneous]
CREATININE (excreted in urine at constant rate)
PHOSPHOCREATINE (PCr):
β’ Immediate energy reserve in muscle & brain
β’ PCr + ADP β Creatine + ATP [Creatine kinase]
β’ 1st energy source in explosive, short-duration exercise
β’ Replenished by ATP during rest
CREATININE:
β’ Waste product of creatine metabolism
β’ Excreted by glomerular filtration
β’ Normal: 0.6-1.2 mg/dL (serum)
β’ Used as marker of GFR / renal function
β’ Constant production β reliable indicator
β Serum Creatinine:
β Acute Kidney Injury (AKI)
β Chronic Kidney Disease (CKD)
β Rhabdomyolysis (muscle destruction)
β CK (Creatine Kinase) isoenzymes:
β’ CK-MM β Skeletal muscle damage
β’ CK-MB β Myocardial infarction
β’ CK-BB β Brain injury
Creatine deficiency syndromes:
β’ AGAT deficiency (Step 1 enzyme)
β’ GAMT deficiency (Step 2 enzyme)
β’ Creatine transporter defect (SLC6A8)
β Features: Intellectual disability, seizures,
absent creatine on MR spectroscopy
STEP 1:
GLUTAMATE + CYSTEINE + ATP
β [Ξ³-Glutamylcysteine synthetase]
β RATE-LIMITING STEP
Ξ³-GLUTAMYLCYSTEINE + ADP + Pi
STEP 2:
Ξ³-GLUTAMYLCYSTEINE + GLYCINE + ATP
β [Glutathione synthetase]
GLUTATHIONE (GSH) - TRIPEPTIDE
(Ξ³-Glu β Cys β Gly)
GLUTATHIONE (GSH) - REDUCED FORM [Active]
β
ββββββΌβββββββββββββββββββββββββββ
βΌ βΌ βΌ
ANTIOXIDANT DETOXIFICATION AMINO ACID
β (Phase II drug TRANSPORT
β metabolism) (Ξ³-GT cycle)
βΌ
2 GSH + HβOβ β GSSG + 2HβO
[Glutathione Peroxidase + Se]
β
βΌ
GSSG (oxidized) + NADPH + HβΊ
β [Glutathione Reductase]
2 GSH + NADPβΊ
(NADPH from HMP shunt / PPP)
OTHER FUNCTIONS:
β’ Maintains protein -SH groups (prevents oxidation)
β’ Conjugates with xenobiotics β mercapturic acid excretion
β’ Leukotriene synthesis (LTCβ, LTDβ, LTEβ)
β’ Maintains RBC integrity
ββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
β 1. G6PD DEFICIENCY β
β β NADPH β β GSH β β oxidative hemolysis β
β Triggered by: Primaquine, Dapsone, Fava beans β
β β Heinz bodies, Bite cells on smear β
ββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
ββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
β 2. ACETAMINOPHEN TOXICITY β
β Paracetamol β NAPQI (toxic metabolite) β
β GSH neutralizes NAPQI β
β Overdose β GSH depleted β hepatic necrosis β
β Treatment: N-Acetylcysteine (NAC) β replenishes β
β GSH precursor (cysteine) β
ββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
ββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
β 3. Ξ³-GLUTAMYL TRANSPEPTIDASE (GGT) - Lab marker β
β β GGT in: Alcoholic liver disease, cholestasis, β
β enzyme induction by alcohol β
ββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
ββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
β 4. GLUTATHIONE SYNTHETASE DEFICIENCY β
β β 5-Oxoprolinuria (pyroglutamic aciduria) β
β β Hemolytic anemia + metabolic acidosis β
ββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
| Question | Rate-Limiting Step | Key Enzyme | Key Disorder |
|---|---|---|---|
| Q44 Cholesterol synthesis | HMG CoA β Mevalonate | HMG CoA Reductase | Familial Hypercholesterolemia |
| Q45 Cholesterol degradation | Cholesterol β 7Ξ±-OH | 7Ξ±-Hydroxylase | Cholelithiasis |
| Q46 Obesity | Insulin resistance | Adipose tissue + liver | Metabolic Syndrome |
| Q47 Eicosanoids | AA β PGGβ | COX (PGHβ Synthase) | Asthma (LTs), Thrombosis (TXAβ) |
| Q48 Ammonia | Glutamate β Ξ±-KG + NHβ | GDH (mitochondria) | Hepatic encephalopathy |
| Q49 Urea Cycle | NHβ + COβ β Carbamoyl-P | CPS-I (requires NAG) | OTC deficiency (most common) |
| Q50 Glycine | Glycine β COβ+NHβ+CHβ-THF | Glycine decarboxylase | Non-ketotic hyperglycinemia |
| Q51 Creatine | Arg+Gly β Guanidinoacetate | Transamidinase (kidney) | CK-MB in MI; AKI in β creatinine |
Source: Lippincott's Illustrated Reviews Biochemistry 8th Ed, Harper's Illustrated Biochemistry 32nd Ed