Here is everything you need to know from Harrison's Principles of Internal Medicine, 22nd Edition (2025) - Section 5: Diseases Caused by Gram-Positive Bacteria, Chapters 151-159.
HARRISON'S SECTION 5: DISEASES CAUSED BY GRAM-POSITIVE BACTERIA
Chapters 151-159 — Complete Study Notes
CHAPTER 151 — PNEUMOCOCCAL INFECTIONS
Authors: David Goldblatt, Katherine L. O'Brien
The Organism
Streptococcus pneumoniae (formerly Diplococcus pneumoniae) - gram-positive diplococci, α-hemolytic (greenish zone on blood agar). Key identifying features:
- Optochin-sensitive (distinguishes from other α-hemolytic streptococci)
- Bile soluble
- Fastidious: needs 5% CO₂ and a catalase source (blood) for agar growth
- 100 recognized serotypes in 21 serogroups, identified by the Quellung reaction (capsular swelling with specific antiserum)
- Encapsulated strains = mucoid/smooth colonies; unencapsulated = rough colonies
Virulence Factors
| Factor | Role |
|---|
| Polysaccharide capsule | Most important - anti-phagocytic, resists complement without type-specific antibody |
| Pneumolysin (PLY) | Cytotoxin; causes cytolysis; induces proinflammatory cytokines |
| PspC/CbpA | Binds factor H; accelerates C3 breakdown |
| ZmpA (metalloprotease) | Cleaves mucosal IgA; prevents mucociliary clearance |
| Exoglycosidases (NanA, BgaA) | Adhesion; deglycosylate host glycoproteins |
| Peptidoglycans/teichoic acids | Induce IL-1, IL-6, TNF; activate complement |
| Biofilm | Survival in upper respiratory tract; aids otitis media |
Epidemiology
- ~317,000 deaths/year in children 1-59 months globally
- Highest IPD rates: children <2 years (188/100,000) and adults ≥65 years (60/100,000)
- Nasopharyngeal carriage: 20-50% in children <5 yrs (developed world); up to 70-90% in LMICs
- Risk factors for pneumococcal disease:
- Asplenia/splenic dysfunction (sickle cell disease, celiac disease)
- Chronic respiratory disease (COPD, CF, bronchiectasis)
- Chronic heart, kidney, or liver disease
- Diabetes mellitus requiring medication
- Immunocompromise: HIV, leukemia/lymphoma, transplant, glucocorticoids ≥20 mg/day for >1 month
- Cochlear implants; CSF leaks
- Alcoholism; malnutrition; cigarette smoking; day-care attendance
Pathogenesis
- Colonizes nasopharynx - downregulates capsule there (rough phenotype), upregulates on tissue invasion (smooth)
- Spreads via bloodstream to brain, joints, peritoneum OR locally → otitis media, pneumonia
- Innate defense: mucociliary escalator, CRP (binds phosphorylcholine → complement), splenic function
- Acquired immunity: capsule-specific serum IgG (T-cell independent, serotype-specific, poor in children <1-2 years)
- IRAK-4 deficiency → unusual susceptibility to encapsulated bacteria
- Inflammatory cascade: peptidoglycans → IL-1, IL-6, TNF → PMN infiltration
Clinical Manifestations
Pneumonia (most common serious syndrome):
- Abrupt onset: cough (dry → purulent/blood-tinged), dyspnea, fever, shaking chills, pleuritic chest pain
- Elderly: may present atypically - confusion/malaise without fever or cough
- CXR: classic lobar/segmental consolidation; "round pneumonia" in children
- Blood cultures positive in <30%
- Lab: WBC >15,000 (up to 40,000); leukopenia in <10% (poor prognosis sign)
- Empyema <5% of cases; pleural pH ≤7.1 indicates empyema → aggressive drainage
- CFR: <5% in 18-44 year olds; >12% in those >65
Meningitis:
- Clinically indistinguishable from other bacterial meningitis
- Severe headache, fever, stiff neck, photophobia, seizures, altered consciousness, Kernig's/Brudzinski's signs
- Now most common bacterial meningitis in children AND adults (alongside N. meningitidis)
- Mortality ~20%; up to 50% of survivors have sequelae (deafness, hydrocephalus, cerebrovascular complications)
- CSF: turbid, elevated protein, elevated WBC, reduced glucose, positive culture/Gram's stain
Other Invasive Syndromes: bacteremia, osteomyelitis, septic arthritis, endocarditis, pericarditis, peritonitis
Non-invasive:
- Acute otitis media - most common pneumococcal syndrome overall
- Sinusitis, bronchitis (usually in pre-existing lung disease)
Diagnosis
- Sputum Gram stain + culture (most cases of adult pneumonia)
- Blood cultures positive <30% in pneumonia
- Urinary pneumococcal antigen - highly specific in adults (not useful in children - high colonization)
- CSF examination for meningitis
- Rapid antigen tests, PCR
Treatment
Meningitis (empirical - high resistance areas):
- Vancomycin + cefotaxime OR ceftriaxone (first-line empirical)
- Adults: vancomycin 30-60 mg/kg/day; cefotaxime 8-12 g/day in 4-6 divided doses OR ceftriaxone 4 g/day
- Children: vancomycin 60 mg/kg/day; cefotaxime 225-300 mg/kg/day
- Penicillin-sensitive isolate: switch to penicillin alone
- Penicillin-resistant + cephalosporin-resistant: vancomycin + high-dose cephalosporin ± rifampin
- Dexamethasone: give BEFORE or WITH first antibiotic dose - reduces mortality, hearing loss, neurologic sequelae in adults
Non-meningeal (outpatients adults):
- Oral amoxicillin 45-90 mg/kg/day (q8h) - best worldwide option
- Levofloxacin 500-750 mg/day or moxifloxacin 400 mg/day
- Azithromycin or clarithromycin effective in ~80%
- Duration: at least 5 days once afebrile (5 days total usually sufficient in adults)
Acute Otitis Media (children):
- <6 months AND 6-23 months bilateral: amoxicillin 80-90 mg/kg/day
- Observation (no antibiotics): nonsevere illness, uncertain diagnosis in 6 months - 2 years
- Duration: 10 days (younger children/severe); 5-7 days for children >6 years mild disease
Prevention/Vaccines
| Vaccine | Details |
|---|
| PPSV23 | 23-valent polysaccharide; licensed 1983; for ≥65 yrs; protection ~5 years |
| PCV7 | 7-valent conjugate; first licensed 2000 (US) |
| PCV13 | 13-valent; licensed 2010 |
| PCV15 (VAXNEUVANCE) | Licensed 2021 adults |
| PCV20 (PREVNAR 20) | Licensed 2021; current US ACIP recommendation for ≥65 AND ages 2-64 with high-risk conditions |
Real-world efficacy: >90% reduction in vaccine-serotype IPD across all ages due to herd immunity from infant vaccination. WHO recommends PCV in all routine childhood schedules; 146 countries (75%) now have national programs.
CHAPTER 152 — STAPHYLOCOCCAL INFECTIONS
Authors: Franklin D. Lowry, Anne-Catrin Uhlemann
The Organism
- Gram-positive cocci forming grape-like clusters, ~1 μm diameter
- Catalase-positive (unlike streptococci); aerobic and facultatively anaerobic
- S. aureus identification:
- Coagulase-positive (converts fibrinogen → fibrin) - most important test
- Ferments mannitol; protein A positive; DNAse positive
- Golden β-hemolytic colonies on blood agar
- Coagulase-negative staphylococci (NSaS/CoNS):
- S. epidermidis = most common pathogen
- S. saprophyticus = novobiocin-resistant, common UTI pathogen in young women
- S. lugdunensis and S. schleiferi = more virulent; native-valve endocarditis
Epidemiology
- ~20-40% of healthy persons colonized; ~10% persistently
- Colonization sites: anterior nares, oropharynx, damaged skin, axilla, vagina, perineum
- Transmission: primarily from person's own commensal flora; direct contact
- Most common cause of surgical wound infections
- MRSA epidemiology:
- Nosocomial MRSA: 40-50% of S. aureus isolates in many US hospitals
- CA-MRSA (community-associated): Dramatic rise since 1990s-2000s
- US predominant clone: ST8 (PFGE type USA300)
- SCCmec types 4-6 in CA-MRSA (vs. types 1-3 in nosocomial)
- 5-10% of CA-MRSA infections are invasive/life-threatening
Virulence Factors
MSCRAMMs (Microbial Surface Components Recognizing Adhesive Matrix Molecules):
- Clumping factor, collagen-binding protein → adhere to fibrinogen, collagen, fibronectin
- Critical for endocarditis and septic arthritis pathogenesis
Host evasion mechanisms:
- Antiphagocytic polysaccharide microcapsule (types 5 and 8)
- Protein A: Fc receptor for IgG → prevents opsonophagocytosis
- CHIPS (chemotaxis inhibitory protein), EAP → inhibit PMN migration
- α-toxin: Pore formation; initiates inflammatory cascade
- Panton-Valentine Leukocidin (PVL): Cytolytic to PMNs and monocytes; linked to CA-MRSA SSTIs and necrotizing pneumonia
- Intracellular survival → sanctuary from host defenses; small-colony variants in osteomyelitis/CF
- Biofilm formation (ica locus) → device-related infections
Toxin-Mediated Mechanisms:
| Toxin | Disease | Mechanism |
|---|
| TSST-1, Enterotoxins A-Q | Toxic Shock Syndrome, food poisoning | Superantigens - bind MHC II outside antigen groove + TCR β-chain → up to 20% T-cell activation → cytokine storm |
| ETA, ETB (serine proteases) | SSSS (Staphylococcal Scalded-Skin Syndrome) | Cleave desmosomal cadherins → epidermal split at granular layer |
| Heat-stable enterotoxins | Food poisoning | Preformed toxin; stimulates vagus nerve + vomiting center; incubation 1-6 h |
MRSA resistance mechanism:
- mecA gene (on SCCmec pathogenicity island) encodes PBP2a → methicillin resistance
- ACME (arginine catabolic mobile element) aids host defense evasion
- VRSA (2002): Acquired vanA from VRE via conjugal transfer; vanA → D-Ala-D-Lac (vancomycin cannot bind)
Clinical Syndromes
Skin and Soft Tissue:
- Folliculitis, furuncle (true abscess in moist/hairy areas), carbuncle (coalescent, lower neck)
- Cellulitis, impetigo, mastitis (1-3% of nursing mothers, 2-3 weeks postdelivery)
- Surgical wound infections (most common cause)
Musculoskeletal:
- Septic arthritis - most common cause in native joints; joint fluid >50,000 PMNs/μL
- Osteomyelitis: hematogenous in children = long bones; adults = vertebral
- Vertebral osteomyelitis: hemodialysis, endocarditis, diabetes, IDU; epidural abscess = emergency
- Pyomyositis (tropical; HIV-infected)
Respiratory:
- Newborns/infants: respiratory failure, pneumatoceles on CXR, pneumothorax, empyema
- Adults: nosocomial (ICU/intubated); post-influenza (post-viral): bloody sputum, midlung-field pneumatoceles, multiple patchy infiltrates
Bacteremia and Endocarditis:
- S. aureus = leading cause of endocarditis worldwide (25-35% of cases); mortality 20-40%
- Bacteremia complications: endocarditis (~25% with catheter-associated bacteremia), metastatic seeding (up to 31%)
- Four clinical settings of endocarditis:
- Right-sided (tricuspid) in IDU: High fever, toxic appearance, pleuritic chest pain, purulent/bloody sputum, septic pulmonary emboli (peripheral circular lesions on CXR that may cavitate)
- Left-sided native-valve: Older patients, worse prognosis, peripheral emboli, CNS involvement
- Prosthetic-valve: Fulminant early postoperative; often requires valve replacement
- Nosocomial: Intravascular devices; often blood culture-negative at presentation
- Signs: new/changing murmur, Osler's nodes, Janeway lesions, Roth spots; Duke criteria used
Device-Related Infections: intravascular catheters, prosthetic valves, orthopedic devices, pacemakers, LVADs - requires device removal in most cases
Toxin-Mediated Diseases:
-
Food Poisoning: Incubation 1-6 hours; nausea/vomiting ± diarrhea/hypotension; fever absent; resolves 8-10 hours; supportive treatment only
-
Staphylococcal TSS (menstrual and non-menstrual):
- Criteria: Fever ≥38.9°C + diffuse macular erythroderma + desquamation (1-2 weeks post-rash) + hypotension + ≥3 organ systems involved (GI, muscular, mucous membranes, renal, hepatic, hematologic, CNS)
-
90% menstrual cases due to TSST-1; non-menstrual often due to enterotoxin B
- Onset 2-3 days into menses; rapid progression to vomiting, diarrhea, confusion, myalgias, multiorgan dysfunction
- Recurrence possible if anti-TSST-1 antibody fails to develop
-
SSSS (Scalded-Skin Syndrome):
- Primarily newborns and children
- Thin-walled fluid-filled bullae; Nikolsky's sign positive; mucous membranes SPARED
- Significant fluid losses in extensive disease
CA-MRSA Invasive Infections: Necrotizing fasciitis, necrotizing pneumonia, Waterhouse-Friderichsen syndrome, purpura fulminans
Diagnosis
- Gram stain and culture: S. aureus rarely a blood culture contaminant (unlike CoNS)
- PCR/point-of-care tests for MRSA screening
- CoNS interpretation: Only 10-20% of positive blood cultures = true bacteremia
- True bacteremia criteria: fever, local infection signs, leukocytosis, same strain in separate cultures, growth within 48 hours
- TEE mandatory to rule out endocarditis in all S. aureus bacteremia
Treatment
General principles: Source control (I&D, device removal) + antibiotics. S. aureus bacteremia = 4-6 weeks therapy (high risk endocarditis/metastatic foci). Uncomplicated bacteremia may be treated for 2 weeks (with TEE to confirm no endocarditis).
Parenteral Therapy:
| Susceptibility | Drug of Choice | Alternatives |
|---|
| Penicillin-sensitive | Penicillin G 4 MU q4h | Nafcillin, cefazolin, vancomycin |
| MSSA | Nafcillin or oxacillin 2 g q4h OR cefazolin 2 g q8h | Daptomycin 6-10 mg/kg q24h; vancomycin (less effective than β-lactams for MSSA) |
| MRSA | Vancomycin 15-20 mg/kg q8-12h OR daptomycin 6-10 mg/kg q24h | Linezolid 600 mg q12h; ceftaroline 600 mg q8-12h; TMP-SMX; tedizolid; oritavancin; dalbavancin |
| VISA/VRSA | Daptomycin ± ceftaroline | Check sensitivity |
Oral for SSTIs:
| MSSA | MRSA |
|---|
| Dicloxacillin 500 mg qid; cephalexin 500 mg q12h | Clindamycin 300-450 mg tid; TMP-SMX; linezolid 600 mg q12h; tedizolid 200 mg q24h |
Specific situations:
- Endocarditis (MRSA): Vancomycin AUC-based dosing OR daptomycin 6-10 mg/kg q24h × 6 weeks
- Prosthetic-valve endocarditis: Vancomycin/β-lactam + gentamicin 1 mg/kg q8h × 2 weeks + rifampin 300 mg q8h × ≥6 weeks; usually requires surgery
- TSS: Fluids + pressors; remove tampon/packing; clindamycin + semi-synthetic penicillin (MSSA) OR clindamycin + vancomycin (MRSA); IVIG uncertain benefit; clindamycin preferred (inhibits toxin production)
- Prosthetic joint infections: Rifampin + ciprofloxacin (biofilm activity); almost always requires prosthesis removal
Key newer agents:
- Daptomycin: Bactericidal membrane disruptor; NOT effective for respiratory infections (inactivated by surfactant); monitor CPK
- Linezolid: Bacteriostatic; excellent oral bioavailability; adverse effects: thrombocytopenia, peripheral/optic neuropathy (prolonged use)
- Ceftaroline: 5th-gen cephalosporin; bactericidal vs. MRSA including VISA/VRSA
- Dalbavancin/oritavancin: Long-acting lipoglycopeptides; once-weekly dosing for SSTIs
- Delafloxacin: Fluoroquinolone with MRSA activity
Prevention:
- Hand washing; isolation; universal/targeted MRSA screening
- Decolonization: topical mupirocin (nasal) + chlorhexidine body washes
- Community/recurrent: household decolonization + bleach baths (½ cup bleach in half-filled bathtub, 15 min, 3×/week)
- Vaccines: capsular polysaccharide-protein conjugate and clumping factor antibody strategies have NOT been successful in trials
CHAPTER 153 — STREPTOCOCCAL INFECTIONS
Author: Michael R. Wessels
Classification of Streptococci
| Lancefield Group | Species | Hemolysis | Infections |
|---|
| A | S. pyogenes (GAS) | β | Pharyngitis, impetigo, cellulitis, necrotizing fasciitis, TSS, ARF |
| B | S. agalactiae (GBS) | β | Neonatal sepsis/meningitis, puerperal infection, UTI |
| C, G | S. dysgalactiae ssp. equisimilis (SDSE) | β | Cellulitis, bacteremia, endocarditis |
| D enterococci | E. faecalis, E. faecium | Usually non-hemolytic | UTI, nosocomial bacteremia, endocarditis |
| D non-entero | S. gallolyticus (formerly S. bovis) | Usually non-hemolytic | Bacteremia, endocarditis (associated with colon cancer) |
| Nongroupable | Viridans streptococci | α | Endocarditis, dental/brain abscess |
| Variable | S. milleri/anginosus group | Variable | Brain abscess, visceral abscess |
Global burden: ~500,000 deaths/year from GAS infections + sequelae; rebound in invasive GAS globally in 2023-2024 after COVID-19 social distancing rebound.
GROUP A STREPTOCOCCUS (GAS) - S. pyogenes
Virulence Factors:
- M protein (major surface protein): anti-phagocytic; binds fibrinogen → blocks complement; >200 emm types; M protein-specific antibodies are protective (serotype-specific)
- Hyaluronic acid capsule: Anti-phagocytic; binds CD44 on pharyngeal epithelium; weak immunogen
- Streptolysin S and O: β-hemolysis; cell membrane damage; ASO antibody = useful serodiagnosis for ARF/PSGN
- Streptokinase: Fibrinolysis
- DNases (A-D): Anti-DNase B antibody used for serodiagnosis of recent infection
- SpyCEP (serine protease): Cleaves IL-8 → inhibits neutrophil recruitment
- Pyrogenic exotoxins A, B, C: Cause scarlet fever rash; function as superantigens → invasive infections, necrotizing fasciitis, TSS
Clinical Syndromes:
Pharyngitis:
- Most common bacterial infection of school-age children; 20-40% of exudative pharyngitis in children; rare under age 3
- Transmission: respiratory droplets; incubation 1-4 days
- Signs: purulent exudate on posterior pharynx/tonsillar pillars; enlarged tender anterior cervical lymph nodes
- Diagnosis unreliable on clinical grounds alone
- Rapid antigen test: Specificity >95% (positive = definitive); sensitivity 70-90% (negative → confirm by culture in higher-risk)
- Gold standard: Throat culture
Complications:
- Suppurative (rare with antibiotics): peritonsillar/retropharyngeal abscess, sinusitis, otitis media, meningitis, bacteremia
- Non-suppurative (post-infectious): ARF (Chap. 370), PSGN (Chap. 326)
- Penicillin treats pharyngitis → reduces ARF risk but NOT PSGN risk
Scarlet Fever:
- Streptococcal infection (usually pharyngitis) + characteristic rash from pyrogenic exotoxins
- Rash: begins day 1-2 on upper trunk → spreads to extremities, spares palms/soles
- "Sandpaper" texture; circumoral pallor; "strawberry tongue"; Pastia's lines (accentuation in skin folds)
- Desquamation of palms/soles at 6-9 days
- Recent large outbreaks in China and UK; M1 UK strain implicated
Impetigo (Pyoderma):
- Superficial skin infection; young children; warmer months; poor hygiene
- Red papules → vesicular → pustular → honeycomb-like amber crusts; predominantly face and legs; no fever
- GAS colonizes skin first; S. aureus appears as secondary flora
- Bullous impetigo = S. aureus
- Sequela: PSGN may follow; ARF generally does NOT follow skin infection (exception: indigenous Australia/Pacific Islands)
Cellulitis and Erysipelas:
- Erysipelas: Bright red, sharply demarcated from surrounding normal skin; warm, tender, shiny; "peau d'orange" texture; blebs/bullae at 2-3 days; classic on malar face or lower extremities; recurrence common
- Almost always β-hemolytic streptococci (GAS or Group C/G)
- Portal of entry may be distant (e.g., tinea pedis fissures → leg cellulitis)
Necrotizing Fasciitis (Hemolytic Streptococcal Gangrene):
- Two types:
- Polymicrobial (bowel flora): anaerobes + gram-negative bacilli; from bowel surgery
- GAS (alone or with S. aureus): ~60% of cases
- Inoculation site may be distant from clinical involvement
- Presentation: severe pain, malaise, fever, toxic appearance; pain disproportionate to skin appearance (key warning sign); evolves to dusky/mottled erythema, edema; anesthesia develops as cutaneous nerves infarcted
- Management: Early surgical exploration is BOTH diagnostic AND therapeutic (necrosis along fascial planes) → extensive debridement + antibiotics
Streptococcal Myositis: GAS abscess in skeletal muscle; fulminant form has high mortality; bacteremia
GAS Pneumonia and Empyema:
- Previously healthy individuals; abrupt onset; ~50% have empyema (nearly always infected, unlike pneumococcal effusions)
- Empyema volume increases rapidly → drain early (loculates → chronic fibrosis → may need thoracotomy)
Streptococcal TSS (CDC 2010 Definition):
- Criteria: I - isolation of GAS from sterile site (definite) or non-sterile (probable); II - Hypotension AND ≥2 of: renal impairment, coagulopathy, liver impairment, ARDS, generalized erythematous macular rash, soft tissue necrosis
- Most patients are bacteremic (contrast with staphylococcal TSS)
- Lab: marked left shift, hypocalcemia, hypoalbuminemia, thrombocytopenia worsening day 2-3
- Most common associated infection: soft tissue infection (necrotizing fasciitis, myositis, cellulitis)
- Mortality ≥30% from shock and respiratory failure
- Pathogenesis: pyrogenic exotoxin A = superantigen → T-cell cytokine storm; IVIG may neutralize these effects
Treatment - GAS:
| Infection | Treatment |
|---|
| Pharyngitis | Benzathine penicillin G 1.2 MU IM (single dose) OR penicillin V 500 mg PO bid × 10 days |
| Impetigo | Same as pharyngitis; also cover S. aureus (dicloxacillin/cephalexin 250 mg qid × 10 days) or topical mupirocin |
| Erysipelas/Cellulitis | Severe: penicillin G 1-2 MU IV q4h; Mild-moderate: procaine penicillin 1.2 MU IM bid |
| Necrotizing fasciitis/myositis | Surgical debridement + penicillin G 2-4 MU IV q4h + clindamycin 600-900 mg IV q8h |
| Pneumonia/Empyema | Penicillin G 2-4 MU IV q4h + drainage |
| Streptococcal TSS | Penicillin G 2-4 MU IV q4h + clindamycin 600-900 mg IV q8h + IVIG 2 g/kg single dose |
Important caveats:
- Clindamycin resistance: ≥30% of invasive GAS in US since ~2021; must confirm susceptibility; linezolid is alternative
- Macrolide resistance: >30% among invasive GAS in US; avoid unless susceptibility confirmed
- Full 10 days of pharyngitis treatment required (even though symptoms resolve in 3-5 days) to prevent ARF by eradicating organism
- Clindamycin rationale for necrotizing fasciitis/TSS: Protein synthesis inhibitor → terminates toxin production; retains activity at high bacterial density (β-lactams less effective at stationary growth phase)
- No commercially available GAS vaccine yet
GROUP B STREPTOCOCCUS (GBS) - S. agalactiae
Microbiology:
- Sodium hippurate hydrolysis (+), bile esculin hydrolysis (-), bacitracin (resistant)
- CAMP factor (phospholipase): synergistic hemolysis with S. aureus β-lysin
- 10 antigenically distinct capsular polysaccharides (major virulence factor)
Epidemiology:
- Maternal vaginal/rectal carriage: 5-40% of women
- Neonatal incidence fell from ~2-3/1000 to ~0.6/1000 after prenatal screening in 1990s
- Adults now account for a larger proportion of invasive GBS than newborns
Clinical Syndromes - Neonates:
| Type | Age | Presentation |
|---|
| Early-onset | First week (median 20 h) | Respiratory distress, lethargy, hypotension; all bacteremic; 1/3 have meningitis |
| Late-onset | 1 week-3 months (mean 3-4 weeks) | Meningitis most common (capsular type III); bacteremia, osteomyelitis, septic arthritis |
Risk factors for early-onset: prematurity, prolonged labor, maternal fever, obstetric complications
Clinical Syndromes - Adults:
- Peripartum: fever, endometritis/chorioamnionitis
- Non-peripartum (elderly/chronically ill): cellulitis, UTI, pneumonia, endocarditis, septic arthritis, meningitis, osteomyelitis
Treatment:
Neonates:
- Drug of choice: penicillin
- Empirical: ampicillin + gentamicin until cultures available
- Meningitis duration: ≥14 days (risk of relapse with shorter courses)
- Bacteremia/soft tissue: penicillin 200,000 units/kg/day
Adults:
- Serious infections: ~12 million units/day penicillin G
- Endocarditis/meningitis: 18-24 million units/day
- Vancomycin for penicillin allergy
Prevention - GBS neonatal:
- Screen at 35-37 weeks: lower vaginal + anorectal swab
- Intrapartum chemoprophylaxis: Penicillin 5 million units loading → 2.5 million units q4h until delivery
- Indications: culture-positive, previous GBS infant, GBS bacteriuria, unknown status + premature labor/prolonged rupture >18h/intrapartum fever
- Penicillin allergy (low anaphylaxis risk): cefazolin
- Penicillin allergy (high anaphylaxis risk): clindamycin (if susceptible) or vancomycin
GROUPS C AND G STREPTOCOCCI (SDSE)
- Streptococcus dysgalactiae ssp. equisimilis; extensive genomic overlap with GAS
- Infections: pharyngitis, cellulitis, pneumonia, bacteremia, endocarditis, septic arthritis, meningitis
- Most often affects elderly/chronically ill
- Bacteremia without obvious focus → likely endocarditis
- Zoonotic species (S. equi): from horses/cattle or unpasteurized milk
- Treatment: Penicillin (all sensitive; nearly all inhibited by ≤0.03 μg/mL); ± gentamicin for endocarditis
S. gallolyticus (formerly S. bovis, Group D non-enterococcal)
- Strongly associated with colon carcinoma/polyps - GI workup mandatory in all cases of bacteremia/endocarditis
- Treatment: penicillin as single agent (reliably killed, unlike enterococci)
Viridans Streptococci
- Normal oral flora; S. salivarius, S. mitis, S. sanguis, S. mutans
- Most important cause of bacterial endocarditis (transient bacteremia from eating, toothbrushing)
- Neutropenic patients (bone marrow transplant/high-dose chemo): high fever, shock; treat presumptively with vancomycin (often penicillin-resistant)
S. milleri Group (S. intermedius/anginosus group)
- Suppurative (abscess-forming) infections: brain abscess, abdominal visceral abscess, peritonsillar abscess, subdural/epidural abscess
CHAPTER 154 — ENTEROCOCCAL INFECTIONS
Enterococci are gram-positive cocci (previously classified as Group D Streptococci) - Enterococcus faecalis and E. faecium.
Key features:
- Normal flora of GI and genitourinary tracts
- Intrinsically resistant to cephalosporins, penicillinase-resistant penicillins, and low-level aminoglycosides
- VRE (Vancomycin-Resistant Enterococcus): Major nosocomial problem
- vanA: High-level vancomycin resistance; resistance to teicoplanin
- vanB: Moderate vancomycin resistance; susceptible to teicoplanin
- E. faecium has greater intrinsic resistance than E. faecalis; more commonly vancomycin-resistant in hospitals
Clinical Infections:
- UTI (most common); nosocomial bacteremia; endocarditis; intraabdominal/pelvic infections; wound infections; rarely meningitis
- Endocarditis: typically subacute; often affects damaged native valves; prosthetic valve endocarditis also common
Treatment:
- UTI: Ampicillin (oral amoxicillin) if susceptible
- Bacteremia: Ampicillin IV if susceptible
- Endocarditis: Penicillin/ampicillin + aminoglycoside synergy (gentamicin) - requires both agents for bactericidal activity
- High-level aminoglycoside resistance (HLAR): if gentamicin-resistant, try streptomycin; if both resistant, aminoglycoside cannot be used
- VRE endocarditis: linezolid or daptomycin (high dose 8-12 mg/kg q24h) ± ampicillin
- VRE treatment: Linezolid 600 mg q12h; daptomycin (high dose); tigecycline; quinupristin-dalfopristin (E. faecium only, not E. faecalis)
- Duration endocarditis: 4-6 weeks (native valve); 6 weeks (prosthetic valve)
VRE Prevention: Contact precautions; judicious vancomycin use; dedicated equipment; surveillance cultures in high-risk units
CHAPTER 155 — INFECTIONS CAUSED BY OTHER GRAM-POSITIVE BACTERIA
(Corynebacterium, Listeria - Chapter 156 in Harrison's numbering)
This section covers important gram-positive bacteria including:
Corynebacterium diphtheriae (Diphtheria):
- Gram-positive club-shaped (Chinese-letter arrangement) non-spore-forming rod; aerobic
- Toxin-producing strains cause disease; toxin encoded by tox gene from bacteriophage β
- Diphtheria toxin: Inhibits protein synthesis by ADP-ribosylation of elongation factor 2 (EF-2); single molecule can kill a cell
- Clinical: Pharyngeal diphtheria: sore throat, low-grade fever, "bull neck" (cervical lymphadenopathy), tough adherent grayish-white pseudomembrane on tonsillar/pharyngeal surfaces that bleeds when removed; risk of airway obstruction
- Myocarditis (weeks 1-2): heart block, arrhythmias; neuropathy (palatal paralysis, oculomotor palsy, peripheral neuropathy; delayed complication)
- Diagnosis: culture on Loeffler's medium, tellurite medium; toxin detection
- Treatment: Diphtheria antitoxin (equine) + penicillin/erythromycin (antibiotics eliminate organism but do NOT neutralize toxin already released)
- Prevention: DTP/DTaP vaccination (diphtheria toxoid)
CHAPTER 156 — LISTERIA MONOCYTOGENES INFECTIONS
Harrison's Principles of Internal Medicine, 22nd Ed., block 18 (pp. 1268-1274)
The Organism
- Gram-positive rod; facultative intracellular pathogen; motile at room temperature (tumbling motility) but not at 37°C
- Grows well at refrigerator temperatures (4°C) - allows survival and multiplication in refrigerated foods
- ActA surface protein: Recruits actin cytoskeleton for intracellular movement and cell-to-cell spread without exposure to extracellular environment
- Primarily a T-cell-mediated (cell-mediated) immune pathogen → explains why immunosuppressed patients and neonates (T-cell deficiency) are most vulnerable
Epidemiology and Risk Factors
- High-risk groups:
- Pregnant women (risk 18× higher than general population)
- Neonates
- Adults ≥65 years
- Immunocompromised: HIV infection, solid organ transplants, malignancy (especially hematologic), glucocorticoids, anti-TNF therapy, alemtuzumab
- Patients on antacid therapy (decreased gastric acidity increases susceptibility)
- Foodborne transmission is the predominant route
- Common vehicles: deli meats, hot dogs, soft cheeses (unpasteurized), smoked fish, raw vegetables, cantaloupe
- Listeria grows at refrigerator temperatures - unlike most pathogens
- Seasonal variation: more common in summer/autumn
Clinical Syndromes
Febrile gastroenteritis (non-invasive):
- Most cases are non-invasive GI illness in healthy individuals
- Incubation: ~24 h
- Fever, diarrhea, nausea/vomiting; self-limiting
Bacteremia (Septicemia):
- Most common manifestation in immunocompromised adults
- Fever, malaise, myalgias, arthralgias; may lack obvious source
- Mortality ~30% (higher with delayed treatment)
- Risk of metastatic seeding (endocarditis, osteomyelitis, abscesses)
Meningoencephalitis (Neurolisteriosis):
- Onset sudden or subacute over several days
- Symptoms similar to other bacterial meningitides
- CSF features distinct: ~60-75% have WBC <1,000/μL (less pronounced pleocytosis than other bacterial meningitides); ~30-40% have low glucose
- Gram's stain: may show gram-positive rods but commonly shows no organisms - sometimes shows gram-positive cocci or diphtheroids (mimics other bacteria)
- Listeria causes <5% of community-acquired bacterial meningitis in US adults
Rhombencephalitis:
- Encephalitis of the cerebellum and brainstem
- Disproportionately affects otherwise healthy older adults
- Biphasic presentation: fever + headache → days later brainstem/cerebellar signs (asymmetric cranial nerve palsies, ataxia, tremor, hemiparesis)
- Nearly half experience respiratory failure
- MRI is superior to CT for diagnosis
- CSF often only minimally abnormal (diagnosis may be delayed)
Focal Infections: Endocarditis, pneumonia, liver/internal organ abscesses, peritonitis, septic arthritis, osteomyelitis, UTI
Pregnancy and Neonatal Listeriosis:
- Risk during pregnancy increased due to impaired maternal cell-mediated immunity
- Most common in third trimester
- Pregnant women: often asymptomatic or mild flulike illness (fever, headache, myalgias); neurolisteriosis and death rare in women without other risk factors
- Outcomes in infected pregnancies (French cohort, 107 pregnancies): 24% fetal loss, 45% premature birth, 6% late-onset neonatal listeriosis, 21% term delivery with complications
- Granulomatosis infantiseptica: Severe in utero infection; disseminated microabscesses and granulomas in skin, liver, spleen; most infants stillborn or die soon after birth
- Neonatal early-onset disease (first week): bacteremia, respiratory distress, rash
- Neonatal late-onset disease (1-4 weeks): meningitis (most common)
- Mortality 30% for neurolisteriosis overall; nearly half of survivors have long-term neurologic impairment
Diagnosis
- Blood cultures are the most reliable method
- CSF culture and Gram's stain (often negative - low sensitivity)
- Culture of placenta, amniotic fluid, neonatal blood/CSF in pregnancy-related cases
- MRI for rhombencephalitis
Treatment
- Drug of choice: Ampicillin IV (most bactericidal; for serious infections)
- Meningitis/serious infection: Ampicillin 2 g q4h IV; add gentamicin 1-1.7 mg/kg q8h for synergy (aminoglycoside adds bactericidal activity)
- Penicillin allergy: TMP-SMX (trimethoprim-sulfamethoxazole) - good intracellular penetration; excellent alternative
- Duration:
- Bacteremia: 2 weeks
- Meningitis: 3 weeks
- Rhombencephalitis or brain abscess: 4-6 weeks
- Cephalosporins are ineffective - intrinsic resistance; never use empirically when Listeria is suspected
- Vancomycin has poor intracellular activity - not preferred
- Dexamethasone associated with increased mortality in neurolisteriosis (contrasts with pneumococcal/other bacterial meningitis)
Prevention
- Cook foods thoroughly; avoid soft cheeses, unpasteurized products, deli meats (especially for high-risk individuals: pregnant women, immunocompromised, elderly)
- No vaccine available
- Prophylaxis with TMP-SMX in severely immunocompromised patients may provide some protection
CHAPTERS 157-158 — TETANUS, BOTULISM
(Other Clostridial Infections)
Tetanus (C. tetani):
- Spore-forming anaerobic rod; tetanospasmin (tetanus toxin) = second most potent toxin known
- Toxin mechanism: cleaves synaptobrevin (VAMP) → blocks inhibitory neurotransmitter (GABA/glycine) release at Renshaw cells → disinhibition → spastic paralysis
- Clinical: trismus ("lockjaw"), risus sardonicus (spastic facial contraction), opisthotonus (back arching), autonomic instability, laryngospasm
- Treatment: tetanus immunoglobulin (TIG) 3000-5000 units IM (neutralize unbound toxin); wound debridement; metronidazole 500 mg IV q6h (drug of choice; better than penicillin, which is a GABA antagonist); diazepam/sedation for spasms; magnesium sulfate for autonomic instability; mechanical ventilation
- Prevention: DTP/DTaP vaccination (active immunization with toxoid)
Botulism (C. botulinum):
- Botulinum toxin = most potent toxin known (lethal dose 0.2-10 ng/kg); 7 serotypes (A-G)
- Mechanism: cleaves SNAP-25 or synaptobrevin → blocks acetylcholine release at neuromuscular junction → flaccid paralysis (descending, symmetric)
- Types of botulism:
- Foodborne: Home-canned foods; incubation 12-36 hours; nausea/vomiting → descending flaccid paralysis; diplopia, dysarthria, dysphagia (cranial nerves first), then limb weakness; no fever; mental status intact
- Wound botulism: Injection drug users; no GI symptoms
- Infant botulism: Honey ingestion or environment; constipation first → hypotonia ("floppy baby"), poor feeding, weak cry
- Diagnosis: mouse inoculation bioassay (gold standard); ELISA for toxin
- Treatment: heptavalent botulinum antitoxin (HBAT) - equine (give early before toxin binds irreversibly); supportive care/mechanical ventilation; antibiotics do not help foodborne/infant botulism
- Infant botulism: BabyBIG (human-derived botulinum immune globulin)
CHAPTER 159 — GAS GANGRENE AND OTHER CLOSTRIDIAL INFECTIONS
Authors: Amy E. Bryant, Dennis L. Stevens
The Genus Clostridium
-
60 species; gram-positive pleomorphic rod-shaped bacteria; obligately anaerobic (mostly); form endospores resistant to heat, desiccation, chemicals
- May appear gram-negative or gram-variable in older cultures or infected tissue specimens
- C. septicum swarms on solid media; most species motile via peritrichous flagella; C. perfringens, C. ramosum, C. innocuum are non-motile
- Produce more protein toxins than any other bacterial genus: >25 lethal toxins identified; include neurotoxins, enterotoxins, cytotoxins, collagenases, permeases, phospholipases, hemolysins, DNases, neuraminidases
Key toxin reference:
- Botulinum and tetanus neurotoxins = most potent toxins known; lethal doses 0.2-10 ng/kg for humans
- Epsilon toxin (C. perfringens types B and D): causes edema/hemorrhage in brain, heart, spinal cord, kidneys; considered potential bioterrorism agent
Epidemiology:
- Clostridial spores widespread in nature: soil, feces, sewage, marine sediments
- Ecology of C. perfringens in soil influenced by degree/duration of animal husbandry (explains higher incidence in agricultural regions of Europe vs. Sahara)
- C. septicum causes spontaneous (non-traumatic) gas gangrene associated with occult malignancy and neutropenia
Gas Gangrene (Clostridial Myonecrosis)
Causative organisms: C. perfringens (most common), C. septicum, C. novyi, C. histolyticum, C. sordellii
Pathogenesis:
- C. perfringens produces α-toxin (phospholipase C/lecithinase) - major virulence factor; destroys cell membranes, activates platelet aggregation, causes hemolysis, cardiovascular collapse
- θ-toxin (perfringolysin O): Synergizes with α-toxin; causes massive tissue destruction
- Together: systemic effects including hypotension, decreased cardiac output, tachycardia, and cardiovascular collapse
- Gas production from fermentation → crepitus (characteristic finding)
Clinical features:
- Usually follows traumatic wound contamination (soil contamination) or bowel surgery
- Incubation typically <24 hours from onset to diagnosis
- Sudden onset of severe, disproportionate pain at wound site (pain out of proportion to appearance - key feature)
- Wound: tense, edematous; bronze/dusky discoloration; thin, watery, foul-smelling ("mousey/sweet") exudate
- Skin becomes pale, then bronzed, then black as necrosis progresses
- Crepitus on palpation (gas in tissue) - characteristic but may be absent early
- Gas on X-ray/CT in tissue planes (feathering pattern along muscle fascial planes)
- Systemic toxicity: profound tachycardia, disproportionate tachycardia to fever (heart rate may exceed 140 with only mild/moderate fever)
- Bacteremia in 15% of cases
- Rapid deterioration: Shock, renal failure, hemolytic anemia, DIC, multiorgan failure within hours
Spontaneous (Non-traumatic) Gas Gangrene - C. septicum:
- No obvious wound; sudden onset; most commonly in cecum/terminal ileum area
- Associated with colorectal carcinoma, leukemia, neutropenia (especially chemotherapy-induced)
- Rapidly fatal; mortality >50% even with treatment
Diagnosis:
- Clinical diagnosis (cannot wait for laboratory confirmation)
- Wound Gram stain: large gram-positive rods; few or no PMNs (characteristic - organisms not killed by neutrophils)
- Imaging: CT/X-ray showing gas in deep tissue planes
- Blood cultures (positive in ~15%)
Treatment - EMERGENCY:
- Immediate surgical debridement - most critical intervention; aggressive; repeat operations often needed
- Antibiotics: High-dose penicillin G + clindamycin (same rationale as for GAS necrotizing fasciitis: toxin inhibition)
- Penicillin G 3-4 MU IV q4h (24 MU/day)
- Clindamycin 600-900 mg IV q8h
- C. septicum is susceptible to penicillin, clindamycin, metronidazole
- Hyperbaric oxygen (HBO): Adjunctive; inhibits anaerobic metabolism; may help demarcate viable tissue; use after initial surgical stabilization; do NOT delay surgery for HBO
- ICU supportive care: Fluids, vasopressors; management of DIC, renal failure, hemolytic anemia
Prognosis: Mortality 20-50%; best outcomes with early diagnosis + aggressive surgery + antibiotics + HBO; delay is fatal
Other Clostridial Infections
C. difficile (CDI - Clostridioides difficile infection):
- Leading cause of nosocomial diarrhea
- Toxins A (enterotoxin) and B (cytotoxin): disrupt colonic epithelial tight junctions
- Clinical spectrum: mild diarrhea → pseudomembranous colitis → toxic megacolon → colonic perforation
- Risk factors: antibiotic use (clindamycin, cephalosporins, fluoroquinolones most implicated), hospitalization, PPI use, age ≥65
- Diagnosis: stool toxin EIA, PCR (GDH antigen screening + toxin confirmation)
- Treatment: Fidaxomicin 200 mg bid × 10 days (preferred over vancomycin for non-severe initial episode due to lower recurrence); vancomycin oral 125 mg qid × 10 days; metronidazole (less effective, reserved for mild cases where others unavailable); bezlotoxumab (monoclonal antibody against toxin B; reduces recurrence); FMT (fecal microbiota transplant) for recurrent CDI; discontinue offending antibiotic
Clostridial Bacteremia:
- Often transient; arises from GI tract (especially bowel malignancy)
- C. septicum bacteremia: search for occult malignancy (colon cancer, hematologic malignancy)
- C. perfringens bacteremia: often from GI/biliary/GU source; may cause massive hemolysis (rare)
Clostridial Food Poisoning (C. perfringens enterotoxin):
- Second most common cause of food poisoning in US (after Salmonella)
- Typically from cooked meat/poultry dishes that cool slowly → spores survive → germinate → toxin produced
- Incubation: 8-16 hours; watery diarrhea + crampy abdominal pain; NO vomiting; NO fever (contrast with staphylococcal food poisoning)
- Self-limiting (24 hours); supportive treatment only; spores also cause necrotizing enteritis (pigbel) in Papua New Guinea (type C strains)
Clostridial Wound Infections (contamination without invasive disease):
- Clostridia contaminate >30% of battle wounds without causing gas gangrene
- Simple wound contamination: no treatment beyond wound debridement
- Localized infection (cellulitis): penicillin + debridement; different from myonecrosis
KEY SUMMARY AND CLINICAL PEARLS
Antibiotic Quick Reference
| Organism | Infection | Drug of Choice | Alternative |
|---|
| S. pneumoniae (susceptible meningitis) | Meningitis | Penicillin G 24 MU/day | Cefotaxime/ceftriaxone |
| S. pneumoniae (resistant - empirical) | Meningitis | Vancomycin + ceftriaxone/cefotaxime | ± Rifampin; add dexamethasone |
| S. pneumoniae non-meningeal | Mild-moderate | Amoxicillin (PO) or penicillin IV | Levofloxacin/moxifloxacin |
| MSSA (invasive) | Bacteremia/endocarditis | Nafcillin/oxacillin 2 g q4h | Cefazolin; daptomycin |
| MRSA (invasive) | Bacteremia/endocarditis | Vancomycin 15-20 mg/kg q8-12h | Daptomycin 6-10 mg/kg q24h |
| MRSA (SSTIs, oral) | Skin | Clindamycin/TMP-SMX | Doxycycline; linezolid |
| S. pyogenes (GAS) | Pharyngitis | Benzathine penicillin G 1.2 MU IM | Penicillin V 10 days; cephalexin |
| GAS necrotizing fasciitis | Emergency | Penicillin G + clindamycin + surgery | Linezolid if clindamycin-resistant |
| GAS TSS | Emergency | Penicillin G + clindamycin + IVIG 2 g/kg | Linezolid |
| S. agalactiae (GBS) neonatal | Meningitis | Penicillin G (≥14 days) | Ampicillin + gentamicin |
| Enterococcus (endocarditis) | Endocarditis | Ampicillin + gentamicin (synergy required) | Daptomycin or linezolid for VRE |
| L. monocytogenes | Meningitis | Ampicillin IV + gentamicin (never cephalosporins) | TMP-SMX |
| C. perfringens | Gas gangrene | Penicillin G 24 MU/day + clindamycin + surgery | ± Hyperbaric O₂ |
| C. tetani | Tetanus | TIG + metronidazole + wound debridement | Supportive care |
| C. botulinum | Botulism | Heptavalent antitoxin (HBAT) + supportive | BabyBIG for infant type |
| C. difficile | CDI | Fidaxomicin 200 mg bid × 10 days (preferred) | Vancomycin oral 125 mg qid × 10 days |
High-Yield Clinical Pearls (Exam Essentials)
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Pneumococcus: Optochin-sensitive + bile soluble = S. pneumoniae. Add dexamethasone WITH/BEFORE first antibiotic for meningitis. Empirical meningitis = vancomycin + 3rd-gen cephalosporin.
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S. aureus: Always get TEE to rule out endocarditis in bacteremia. Vancomycin is less effective than β-lactams for MSSA - always de-escalate if MSSA. Daptomycin is inactivated by pulmonary surfactant - never use for pneumonia.
-
GAS: Pain disproportionate to appearance = necrotizing fasciitis until proven otherwise → surgical emergency. Clindamycin used WITH penicillin to stop toxin production. Macrolide and clindamycin resistance now >30% in invasive GAS in US - confirm susceptibility.
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GBS: Screen all pregnant women at 35-37 weeks. Early-onset neonatal GBS = first week of life. Cefazolin for penicillin allergy with low anaphylaxis risk.
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S. gallolyticus bacteremia/endocarditis = always colonoscopy (associated with colon carcinoma).
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Enterococcus: Intrinsically resistant to cephalosporins. Endocarditis requires penicillin + aminoglycoside synergy. VRE = use linezolid or high-dose daptomycin.
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Listeria: Grows at refrigerator temperature (unique). Cephalosporins are INEFFECTIVE (intrinsic resistance). Ampicillin + gentamicin = treatment of choice. Dexamethasone increases mortality in neurolisteriosis (opposite of other bacterial meningitis). CSF Gram stain often negative - may show cocci/diphtheroids (confusing). Rhombencephalitis = biphasic with respiratory failure.
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Gas Gangrene: Large gram-positive rods + few or no PMNs on Gram stain (pathognomonic impression). Incubation <24 hours. C. septicum spontaneous gangrene = search for occult malignancy/neutropenia. HBO is adjunctive - do NOT delay surgery for HBO.
-
C. difficile: Fidaxomicin preferred over vancomycin (lower recurrence). Metronidazole only if others unavailable. FMT for recurrent disease.
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Botulism vs. tetanus: Botulism = flaccid paralysis (blocks ACh release, descending); Tetanus = spastic paralysis (blocks inhibitory GABA/glycine release). Antitoxin helps both but must be given early.
All content from: Harrison's Principles of Internal Medicine, 22nd Edition (2025, McGraw-Hill Medical), ISBN: 9781265977061, Section 5: Diseases Caused by Gram-Positive Bacteria, Chapters 151-159.