I’m a pathology final year resident help me prepare a 10 mark answer on imported infectious diseases
imported infectious diseases pathology exam answer India USMLE tropical parasitic diseases
| Category | Examples |
|---|---|
| Protozoal | Malaria, Leishmaniasis, Trypanosomiasis, Amoebiasis, Giardiasis |
| Helminthic | Schistosomiasis, Filariasis, Strongyloidiasis, Cysticercosis, Hydatid disease |
| Viral | Dengue, Chikungunya, Viral Haemorrhagic Fevers (Ebola, Lassa, Marburg), Zika |
| Bacterial | Typhoid, Brucellosis, Cholera, Plague, Melioidosis |
| Mycobacterial | Tuberculosis, Leprosy |
| Technique | Application |
|---|---|
| Thick/thin blood smear (Giemsa) | Malaria species identification |
| LD body (Giemsa stain) | Leishmaniasis in BM/splenic aspirate |
| Ziehl-Neelsen | Acid-fast organisms |
| Haematoxylin-eosin | Granulomas, tissue reaction |
| PAS / silver stains | Fungal infections |
| PCR / immunohistochemistry | VHFs, confirmation |
| Electron microscopy | Viral ultrastructure |
| Disease | Organism | Key Pathological Lesion | Classic Finding |
|---|---|---|---|
| Malaria | Plasmodium spp. | Haemolysis, haemozoin | Dürck's granulomas (cerebral) |
| Kala-azar | L. donovani | Splenomegaly, LD bodies | Reversed A:G ratio |
| Schistosomiasis | Schistosoma spp. | Pipestem fibrosis | Bladder SCC |
| Ebola/Yellow Fever | Filovirus/Flavivirus | Liver necrosis | Councilman bodies |
| Filariasis | Wuchereria bancrofti | Lymphatic obstruction | Elephantiasis |
| Chagas | T. cruzi | Dilated cardiomyopathy | Apical aneurysm, megacolon |
Sources: Robbins & Cotran Pathologic Basis of Disease 10e; Muir's Textbook of Pathology; Mandell's Principles and Practice of Infectious Diseases
PNH, 10 marker
It is the only haemolytic anaemia caused by an acquired genetic defect (somatic mutation).
120 distinct somatic PIGA mutations have been described
| Protein | Alias | Function |
|---|---|---|
| CD59 | MIRL (Membrane Inhibitor of Reactive Lysis) | Inhibits C3 convertase; blocks MAC (C5b-9) assembly - most important |
| CD55 | DAF (Decay Accelerating Factor) | Antagonises C3/C5 convertase complexes |
| C8-binding protein | Homologous restriction factor | Controls MAC assembly |
| CD58 | LFA-3 | Cell adhesion |
| CD14 | Endotoxin receptor | Innate immunity |
| CD16a | FcγRIII | NK cell/neutrophil function |
| Acetylcholinesterase | AChE | Enzymatic (on RBCs) |
| Type | Complement Sensitivity | GPI Proteins |
|---|---|---|
| Type I | Normal | Normal |
| Type II | 3-5x normal | Partial deficiency |
| Type III | 15-25x normal | Complete absence |

| Modality | Details |
|---|---|
| Eculizumab | Humanised anti-C5 monoclonal antibody; blocks MAC formation; approved 2007. Reduces haemolysis, transfusion requirements, thrombosis risk by up to 90%. Requires IV dosing every 14 days. Risk: meningococcal infection (meningococcal vaccination mandatory before use) |
| Ravulizumab | Long-acting anti-C5 antibody; dosing every 8 weeks |
| Pegcetacoplan | Anti-C3 (proximal complement inhibitor); prevents both intravascular AND extravascular haemolysis; corrects anaemia more completely |
| HSCT | Only curative option; reserved for intercurrent aplastic anaemia, myeloid malignancy, or refractory disease |
| Supportive | Iron/folate replacement, anticoagulation for thrombosis, transfusions |
| Immunosuppression | Useful when marrow aplasia is prominent (cyclosporine, ATG) |
| Feature | Detail |
|---|---|
| Gene | PIGA (X-linked, somatic mutation) |
| Anchor lost | GPI (glycosylphosphatidylinositol) |
| Most important protein lost | CD59 (MIRL) |
| Type of haemolysis | Intravascular (complement-mediated) |
| Classic presentation | Morning haemoglobinuria, anaemia, venous thrombosis |
| Diagnostic test | Flow cytometry (FLAER/CD59/CD55) |
| Old tests | Ham's acid lysis, sucrose haemolysis (obsolete) |
| Thrombosis sites | Hepatic vein (Budd-Chiari), portal, cerebral |
| Coombs/DAT | Negative (unlike autoimmune HA) |
| Leading cause of death | Thrombosis |
| Transformation | 5% → AML/MDS |
| Treatment | Eculizumab (anti-C5); HSCT for cure |
Sources: Robbins & Cotran Pathologic Basis of Disease 10e (p. 606); Henry's Clinical Diagnosis and Management by Laboratory Methods; Harrison's Principles of Internal Medicine 22e
Classify myelodysplastic syndrome And mention diagnostic criteria for 10 marks
The term "Myelodysplastic Neoplasm" is preferred in the WHO 5th edition (2022) and ICC 2022 classification, reflecting their established neoplastic nature, though "MDS" remains in widespread clinical use.
| Type | Details |
|---|---|
| Primary (de novo) MDS | Idiopathic; no prior genotoxic exposure |
| Secondary / therapy-related MDS (t-MDS) | Follows chemotherapy (alkylating agents, topoisomerase II inhibitors) or radiation therapy; appears 2-8 years after exposure; more aggressive, rapid AML transformation |
| WHO 2022 Category | Key Features | Blast % (BM) |
|---|---|---|
| MDS with low blasts (MDS-LB) | 1-2 lineage dysplasia, cytopenias, no ring sideroblasts | <5% BM, <2% PB |
| MDS with low blasts and SF3B1 mutation (MDS-SF3B1) | Ring sideroblasts ≥15% (or ≥5% + SF3B1 mutation); typically unilineage erythroid dysplasia | <5% BM, <2% PB |
| MDS with low blasts and 5q deletion (MDS-5q) | del(5q) ± one additional abnormality (not -7/del7q); isolated macro-ovalocytes; hypolobated megakaryocytes | <5% BM, <2% PB |
| MDS with increased blasts 1 (MDS-IB1) | 5-9% blasts in BM or 2-4% in PB | 5-9% BM or 2-4% PB |
| MDS with increased blasts 2 (MDS-IB2) | 10-19% blasts in BM or 5-19% in PB or Auer rods | 10-19% BM or 5-19% PB |
| MDS with biallelic TP53 inactivation (MDS-biTP53) | Two TP53 mutations or one mutation + del(17p)/LOH; complex karyotype; very poor prognosis | Any blast % |
| MDS, hypoplastic (MDS-h) | Hypocellular marrow (<25% age-adjusted cellularity) + dysplasia; overlap with aplastic anaemia | <5% BM |
| MDS, not otherwise specified (MDS-NOS) | Does not fit above categories | <5% BM |
| WHO 2016 Category | Dysplastic Lineages | Cytopenias | RS% | BM Blasts | PB Blasts | Cytogenetics |
|---|---|---|---|---|---|---|
| MDS-SLD (Single lineage dysplasia) | 1 | 1-2 | <15% / <5%* | <5% | <1% | Any except MDS-defining |
| MDS-MLD (Multilineage dysplasia) | 2-3 | 1-3 | <15% / <5%* | <5% | <1% | Any except MDS-defining |
| MDS-RS-SLD (Ring sideroblasts, single lineage) | 1 | 1-2 | ≥15% / ≥5%* | <5% | <1% | Any except MDS-defining |
| MDS-RS-MLD (Ring sideroblasts, multilineage) | 2-3 | 1-3 | ≥15% / ≥5%* | <5% | <1% | Any except MDS-defining |
| MDS with isolated del(5q) | 1-2 | 1-2 | None/any | <5% | <1% | del(5q) alone or + 1 abnormality (not -7) |
| MDS-EB-1 (Excess blasts 1) | 0-3 | 1-3 | None/any | 5-9% | 2-4% | Any |
| MDS-EB-2 (Excess blasts 2) | 0-3 | 1-3 | None/any | 10-19% | 5-19% or Auer rods | Any |
| MDS-U (Unclassifiable) | Various | 1-3 | <15% | <5% | <1% | MDS-defining abnormality |
| Criterion | Threshold |
|---|---|
| Dysplasia | ≥10% of cells in ≥1 myeloid lineage |
| Ring sideroblasts | ≥15% of erythroid precursors (or ≥5% + SF3B1 mutation) |
| Increased blasts | 5-19% in BM or 2-19% in PB |
| MDS-defining cytogenetic abnormality | See below - sufficient even without morphological dysplasia |
Note: Trisomy 8, del(20q), and loss of Y chromosome are NOT considered MDS-defining as isolated abnormalities - they require concurrent morphological dysplasia.
| Investigation | Finding in MDS |
|---|---|
| Peripheral blood smear | Cytopenias, pseudo-Pelger-Huet cells, hypogranular neutrophils, macrocytes, teardrop cells |
| Bone marrow aspirate | Dysplasia in ≥1 lineage, blast %, ring sideroblasts (Perls' stain) |
| Bone marrow biopsy | Cellularity, reticulin fibrosis, blast distribution |
| Cytogenetics (karyotype) | Clonal chromosomal abnormalities - required in all new MDS |
| FISH | For specific abnormalities when karyotype inadequate (<20 metaphases) |
| Flow cytometry | Aberrant antigen expression on myeloid precursors (supportive) |
| NGS/molecular panel | SF3B1, SRSF2, TET2, DNMT3A, ASXL1, RUNX1, TP53 - aids diagnosis and prognosis |
| Serum B12, folate, copper, TSH | Exclusion of nutritional/reactive dysplasia |
| Iron studies | Iron deficiency vs. sideroblastic process |
| Parameter | Variables |
|---|---|
| Cytogenetics | Very good → Very poor (5 categories) |
| BM blast % | <2%, 2-4.9%, 5-10%, >10% |
| Haemoglobin | <8, 8-10, ≥10 g/dL |
| Platelets | <50, 50-100, ≥100 × 10⁹/L |
| ANC | <0.8, ≥0.8 × 10⁹/L |
| Strategy | Indication |
|---|---|
| Supportive (transfusions, ESAs, G-CSF) | Low-risk MDS, elderly patients |
| Lenalidomide | MDS with del(5q) - targets haploinsufficiency of RPS14 and CSNK1A1 |
| DNA hypomethylating agents (Azacitidine, Decitabine) | Higher-risk MDS; "reprogram" epigenetically dysregulated stem cells |
| Allogeneic HSCT | Only curative option; reserved for higher-risk younger patients |
| Luspatercept | MDS-SF3B1 / ring sideroblast subtypes - reduces transfusion burden |
| Entity | Blasts | Key Feature | Prognosis |
|---|---|---|---|
| MDS-LB / MDS-SLD | <5% | 1-lineage dysplasia | Relatively good |
| MDS-SF3B1 / RS subtypes | <5% | Ring sideroblasts + SF3B1 | Favourable |
| MDS-5q | <5% | del(5q), hypolobated megakaryocytes | Favourable (responds to lenalidomide) |
| MDS-IB1 / EB-1 | 5-9% | Excess blasts | Intermediate |
| MDS-IB2 / EB-2 | 10-19% | Excess blasts / Auer rods | Poor; near-AML |
| MDS-biTP53 | Any | Biallelic TP53, complex karyotype | Very poor |
Sources: Robbins & Cotran Pathologic Basis of Disease 10e; Robbins & Kumar Basic Pathology 11e; Henry's Clinical Diagnosis and Management by Laboratory Methods; WHO Classification of Haematolymphoid Tumours 5th ed. (2022)
Hemophagocytic Syndromes for 10 marks
| Subtype | Gene | Protein | Step Affected |
|---|---|---|---|
| FHL-2 | PRF1 | Perforin | Granule content - pore forming protein |
| FHL-3 | UNC13D | Munc13-4 | Granule docking |
| FHL-4 | STX11 | Syntaxin-11 | Granule priming |
| FHL-5 | STXBP2 | Munc18-2 | Granule fusion with plasma membrane |
PRF1 and UNC13D variants account for ~30% each of FHL cases.

| Syndrome | Gene | Key Feature |
|---|---|---|
| Chédiak-Higashi syndrome | LYST | Giant lysosomes in leukocytes; progressive neurological disease; silver-grey hair |
| Griscelli syndrome type 2 | RAB27A | Hypopigmentation, silver-coloured hair; RAB27A impairs granule docking |
| Hermansky-Pudlak syndrome type II | AP3B1 | Albinism + platelet defect |
| Trigger Category | Examples |
|---|---|
| Infectious (most common) | EBV (most frequent trigger overall), CMV, HSV, HIV, influenza, COVID-19, visceral leishmaniasis, tuberculosis |
| Malignancy-associated | Peripheral T-cell lymphoma (most common haematological trigger), NK/T-cell lymphoma, DLBCL, leukaemia |
| Autoimmune/Rheumatological (MAS) | Systemic JIA (most common), adult-onset Still's disease, SLE, Kawasaki disease |
| Iatrogenic | CAR-T cell therapy (cytokine release syndrome), checkpoint inhibitors |
| Idiopathic | No identifiable trigger |

In secondary HLH: heterozygous mutations in FHL genes lower the threshold for HLH, and an overwhelming antigenic stimulus (virus, tumour) drives the same cytokine storm even without complete loss of cytotoxic function.
| System | Features |
|---|---|
| Constitutional | High-grade fever (often prolonged, non-remitting) |
| Haematological | Pancytopenia (thrombocytopenia most prominent), petechia, purpura |
| Hepatosplenic | Hepatosplenomegaly, jaundice (conjugated hyperbilirubinaemia), elevated transaminases, LFT derangement |
| Lymphoid | Lymphadenopathy (~50%) |
| CNS | Seizures, altered consciousness, meningism, cranial nerve palsies, ataxia (~33% in FHL) |
| Skin | Transient maculopapular rash, oedema |
| GI | Diarrhoea (especially STXBP2 mutations) |
| Coagulation | DIC, severe bleeding, low fibrinogen |
| Criterion | Threshold |
|---|---|
| 1. Fever | Temperature ≥38.5°C |
| 2. Splenomegaly | Clinical/imaging |
| 3. Bicytopenia | ≥2 cell lines: Hb <90 g/L (<100 g/L in infants <4 weeks), Platelets <100 × 10⁹/L, ANC <1.0 × 10⁹/L |
| 4. Hypertriglyceridaemia and/or hypofibrinogenaemia | Fasting TG ≥3.0 mmol/L (≥265 mg/dL) and/or Fibrinogen ≤1.5 g/L |
| 5. Haemophagocytosis in BM / spleen / lymph nodes | Histological |
| 6. Low or absent NK cell activity | Functional assay |
| 7. Ferritin ≥500 μg/L | (Very high levels >10,000 μg/L highly suggestive) |
| 8. Soluble CD25 (sIL-2Rα) ≥2400 U/mL | Marker of T-cell activation |
Note: The 2024 revision removed NK cell activity as a formal criterion (now 5/7 required). Molecular confirmation of a pathogenic FHL gene variant alone is sufficient for diagnosis, independent of clinical criteria.
| Test | Finding |
|---|---|
| CBC | Pancytopenia (thrombocytopenia earliest and most common) |
| Ferritin | Markedly elevated - >10,000 μg/L highly suggestive |
| sIL-2Rα (sCD25) | Elevated - marker of T-cell activation |
| Triglycerides | Elevated (hypertriglyceridaemia) |
| Fibrinogen | Reduced (hypofibrinogenaemia) |
| LFTs | Elevated transaminases, bilirubin |
| Coagulation | Prolonged PT/APTT, low fibrinogen, elevated D-dimer (DIC) |
| NK cell function | Low/absent NK cell cytotoxicity |
| Perforin expression | Flow cytometry for intracellular perforin in CTLs (absent in PRF1 mutations) |
| CD107a degranulation assay | Tests granule exocytosis - abnormal in UNC13D, STXBP2, STX11, RAB27A |
| BM biopsy/aspirate | Haemophagocytosis |
| Genetic sequencing (NGS) | Confirms FHL gene variants (PRF1, UNC13D, STX11, STXBP2, RAB27A, SH2D1A) |
| EBV/CMV/HIV serology | Identify infectious triggers |
| Form | Prognosis |
|---|---|
| FHL untreated | Median survival 1-2 months; rapidly fatal |
| FHL treated (with HSCT) | ~50% long-term survival; significant neurological sequelae in ~33% |
| Secondary HLH | Depends on trigger and speed of treatment; malignancy-associated has worst prognosis |
| Long-term complications | Psychomotor retardation (25%), epilepsy (10%), ADHD (10%), endocrinopathies (~10%) |
| Feature | Primary HLH | Secondary HLH / MAS |
|---|---|---|
| Age | Infants, children | Any age |
| Genetics | Autosomal recessive / X-linked | Usually no germline mutation |
| Trigger | Viral (especially EBV) | Infection, malignancy, autoimmune |
| NK/CTL function | Absent/severely reduced | Variably reduced |
| Treatment | HLH-2004 protocol + HSCT | Treat trigger + corticosteroids ± etoposide |
| Cure | HSCT only | Treat underlying cause |
Sources: Robbins & Cotran Pathologic Basis of Disease 10e (p. 581); Robbins & Kumar Basic Pathology 11e; Harrison's Principles of Internal Medicine 22e (Chapter 68, 2025)
Anemia of chronic diseases
Up to 40% of all anaemias worldwide have a significant ACD component. It is particularly prevalent in elderly patients.
| Category | Examples |
|---|---|
| Chronic infections | Tuberculosis, osteomyelitis, subacute bacterial endocarditis, HIV/AIDS, chronic fungal infection |
| Autoimmune/rheumatological | Rheumatoid arthritis (most common non-infective cause), SLE, IBD, vasculitis, sarcoidosis |
| Malignancy | Carcinomas, lymphomas, multiple myeloma (also direct BM involvement) |
| Chronic organ failure | Chronic kidney disease, heart failure, chronic liver disease, COPD |
| Trauma / Critical illness | Acute severe illness, post-surgical states, ICU patients |

CHRONIC INFECTION / INFLAMMATION / MALIGNANCY
↓
┌─────────────────────────────────┐
│ Monocytes / Macrophages / T-cells│
│ Release: IL-6, IL-1β, TNF-α, │
│ IFN-γ │
└─────────────────────────────────┘
↓ ↓ ↓ ↓
IL-6 → Liver TNF-α/IFN-γ IFN-γ/TNF-α Macrophage
↑ Hepcidin ↓ EPO gene ↓ BFU-E/ activation →
↓ Ferroportin transcription CFU-E ↑ Erythro-
→ Fe trapped ↓ EPO levels → ↓ BM phagocytosis
in RE cells + ↓ response erythropoiesis → ↓ RBC survival
ALL → ANAEMIA
This is a key distinguishing feature from IDA where macrophage stores are absent
| Parameter | ACD | IDA | Combined ACD+IDA |
|---|---|---|---|
| Haemoglobin | 8-10 g/dL | Variable | Variable |
| MCV | Normal (normocytic) | Low (microcytic) | Low |
| Serum Iron | Low | Low | Low |
| TIBC (Transferrin) | Low or Normal | High | Normal or Low |
| Transferrin Saturation (TSAT) | Low (<16%) | Low | Low |
| Serum Ferritin | Normal or High (acute phase reactant) | Low (<12 μg/L) | Low-normal |
| Soluble Transferrin Receptor (sTfR) | Normal | Elevated | Elevated |
| sTfR / log Ferritin index | Low | High | High |
| Hepcidin | Elevated | Low | Variable |
| Serum EPO | Low for degree of anaemia | Appropriately elevated | Low |
| BM iron stores | Normal/Increased | Absent | Absent |
| Reticulocyte count | Inappropriately low | Inappropriately low | Low |
| ESR / CRP | Elevated | Normal | Elevated |
| Erythrocyte protoporphyrin | Elevated | Elevated | Elevated |
Key diagnostic clue: Low iron + Low TIBC + Normal/high ferritin + Normal/high BM stores = ACD Low iron + High TIBC + Low ferritin + Absent BM stores = IDA
| Test | ACD | IDA |
|---|---|---|
| Ferritin | >100 μg/L (usually) | <12 μg/L |
| sTfR | Normal | Elevated |
| sTfR/log Ferritin (Thomas index) | <1 | >2 |
| BM Perls' stain | Iron present in macrophages, absent in sideroblasts | No stainable iron |
| Response to IV iron | No improvement in Hb (unless co-deficient) | Hb rises |
| Hepcidin | High | Low |
Ferritin >100 μg/L essentially excludes iron deficiency (Goldman-Cecil); values of 12-100 μg/L are indeterminate and require sTfR or BM biopsy.
| Treatment | Indication |
|---|---|
| Erythropoiesis-stimulating agents (ESAs) - epoetin alfa, darbepoetin | ACD in CKD (standard of care); cancer patients on chemotherapy (with caution - thrombosis risk); NOT for non-chemotherapy cancer |
| Iron supplementation (oral or IV) | Only if concurrent true iron deficiency is present, OR in combination with ESA therapy (to prevent functional iron deficiency from increased erythropoietic demand) |
| Red cell transfusion | For symptomatic severe anaemia (Hb <7-8 g/dL) or haemodynamic compromise |
| Hepcidin antagonists (investigational/emerging) | Anti-hepcidin antibodies, anti-IL-6, anti-BMP/SMAD pathway agents - promising targets; roxadustat (PHD inhibitor) reduces hepcidin and increases EPO |
| Tocilizumab (anti-IL-6R) | Reduces hepcidin in RA patients; anaemia improves as a secondary benefit |
| Concept | Detail |
|---|---|
| Nomenclature | ACD = Anaemia of Inflammation (preferred) |
| Central mediator | Hepcidin (25-aa liver peptide) |
| Hepcidin induction | IL-6 → JAK-STAT3 → hepcidin gene |
| Hepcidin effect | Degrades ferroportin → blocks Fe export from enterocytes, macrophages, hepatocytes |
| Net result | Functional iron deficiency - Fe trapped in RE system |
| BM stores | Normal/increased (differentiates from IDA) |
| TIBC | Low or normal (not elevated - differentiates from IDA) |
| EPO | Inadequately low for degree of anaemia |
| Treatment | Treat underlying cause; ESAs in CKD; hepcidin antagonists emerging |
Sources: Henry's Clinical Diagnosis and Management by Laboratory Methods; Brenner & Rector's The Kidney 11e; Goldman-Cecil Medicine International Edition; Tietz Textbook of Laboratory Medicine 7e
Classify myelodysplastic syndrome and mention diagnostic criteria in brief.