A 3-year-old boy is brought to the emergency department with a 3-day history of fever, cough, and difficulty breathing. His mother reports that the cough started as mild but has become more frequent and productive. The child has also been less active and is refusing to eat. Diagnosis and name of organism?
"community-acquired pneumonia" AND "children" AND "etiology"
"In children between 2 and 5 years of age, most community-acquired pneumonia is caused by respiratory viruses, notably respiratory syncytial virus, human rhinovirus, and human metapneumovirus. Other notable pathogens in this age group include Streptococcus pneumoniae, H. influenzae type b, and nontypeable H. influenzae. Mycoplasma pneumoniae and Chlamydophila pneumoniae are thought to be less common in children <5 years old."
- Tintinalli's Emergency Medicine, p. 853
| Priority | Organism | Type | Notes |
|---|---|---|---|
| #1 (if viral) | Respiratory syncytial virus (RSV), Human rhinovirus, Human metapneumovirus | Virus | Most common overall; >70% of hospitalized pediatric pneumonias |
| #1 (if bacterial) | Streptococcus pneumoniae | Gram-positive coccus | Most common bacterial CAP in this age group |
| #2 | Haemophilus influenzae (nontypeable or type b) | Gram-negative rod | More common in unvaccinated children |
| #3 | Staphylococcus aureus | Gram-positive coccus | Less common; associated with rapid progression, abscess formation |
| Less common | Mycoplasma pneumoniae | Atypical | More common >5 years; causes dry/hacking cough |
| Feature in This Child | Significance |
|---|---|
| Age 3 years | Peak risk for S. pneumoniae and RSV CAP |
| Fever (3 days) | Both viral and bacterial; higher/sustained fevers favor bacterial |
| Productive cough | More suggestive of bacterial origin (lobar/alveolar pneumonia) |
| Progressive worsening | Classic for bacterial "typical" CAP |
| Reduced activity + poor intake | Systemic illness/toxicity - raises concern for bacterial etiology |
| Respiratory distress | Lower respiratory tract involvement confirmed |
Physical examination findings in consolidation
| Examination Step | Normal Finding | Consolidation Finding |
|---|---|---|
| Inspection | Symmetric chest rise | Possible lag or splinting on affected side |
| Palpation | Normal tactile fremitus | Increased tactile fremitus |
| Percussion | Resonant | Dullness |
| Auscultation | Vesicular breath sounds | Bronchial breath sounds; bronchophony, pectoriloquy, crackles |
Murray & Nadel's Textbook of Respiratory Medicine, Table 18.4
"Tactile fremitus increases over an area of consolidation related to pneumonia." - Frameworks for Internal Medicine
"Dullness to percussion is consistent with consolidation or a pleural effusion." - Goldman-Cecil Medicine
"When bronchophony is extreme, spoken words assume a nasal or bleating quality (egophony) and the sound 'ee' is heard through the stethoscope as 'ay'." - Fishman's Pulmonary Diseases and Disorders
"Normal, aerated lung acts as a filter, making these whispered words garbled and undecipherable. If the words are clearly discernible, then pectoriloquy is present and indicative of underlying nonaerated lung." - Frameworks for Internal Medicine
"None of these findings on physical examination is sufficiently sensitive or specific to avoid the need for imaging for radiographic validation."

How do you differentiate consolidation from pleural effusion on exam?
| Examination Step | Consolidation (Pneumonia) | Pleural Effusion | Why They Differ |
|---|---|---|---|
| Inspection | Possible lag/splinting | Lag + increased hemithorax size; trachea & mediastinum shift away from effusion (if large) | Mass effect of fluid pushes structures to opposite side |
| Tactile fremitus | Increased | Decreased or absent | Solid lung conducts vibration better; fluid between lung and wall blocks it |
| Percussion | Dull | Dull to stony flat | Both are dull, but effusion can be flatter/heavier-sounding |
| Breath sounds | Bronchial (loud, tubular) | Absent or markedly reduced | Consolidated lung transmits large-airway sounds; fluid insulates/silences |
| Crackles | Present (late inspiratory) | Absent | Fluid-filled alveoli popping open in consolidation; effusion has no alveolar interface |
| Egophony ("E to A") | Present over consolidation | Absent (except 1-2 cm band at the top edge of effusion) | Compressed lung at fluid's upper border briefly acts like consolidation |
| Whispered pectoriloquy | Present | Absent | Same mechanism as egophony |
| Bronchophony | Present | Absent | Fluid blocks sound transmission |
| Pleural rub | Absent | May be present (if inflamed pleura, before fluid accumulates) | Friction between inflamed pleural surfaces |
"Tactile fremitus is increased over an area of consolidation, whereas it is decreased (often absent) over an effusion. The area of compressed lung just above an effusion is sometimes associated with a thin band of increased tactile fremitus and other signs of consolidation."
- Frameworks for Internal Medicine
"Vocal fremitus and tactile fremitus are increased in lung consolidation but decreased in pleural effusion."
- Textbook of Family Medicine 9e
"Vocal fremitus is increased over regions of lungs where there is increased transmission of sound, for example, consolidation from pneumonia. Conversely, fremitus is decreased in conditions in which sound transmission is impaired, for example, pleural effusion."
- Murray & Nadel's Textbook of Respiratory Medicine
"Localized egophony ('e-to-a' changes) indicates consolidation of that segment or lobe of the lung; it is NOT present in pleural effusion except in a small band just above the upper edge of the effusion."
- Textbook of Family Medicine 9e
| Direction of Shift | Diagnosis |
|---|---|
| Trachea shifts away from dull side | Large pleural effusion (mass effect pushing structures away) |
| Trachea shifts toward dull side | Atelectasis (volume loss pulling structures toward it) |
| No tracheal shift | Consolidation (lung volume is maintained, just airless) |
"The distinction between pleural effusion and atelectasis can be made on physical examination by determining whether the heart and mediastinal contents shift toward or away from the abnormal side."
- Murray & Nadel's Textbook of Respiratory Medicine
| Finding | Consolidation | Pleural Effusion | Atelectasis |
|---|---|---|---|
| Fremitus | Increased | Decreased/absent | Decreased |
| Percussion | Dull | Dull/stony flat | Dull/flat |
| Breath sounds | Bronchial + crackles | Absent | Absent |
| Egophony | Present | Absent (thin band at top only) | Absent |
| Tracheal shift | None | Away from lesion | Toward lesion |
| Expansion | Slight lag | Lag + increased size | Lag + decreased size |
A 6-month-old infant is brought to the clinic with a 3-day history of cough, runny nose, and low-grade fever. Over the last 24 hours, the baby has developed difficulty breathing and poor feeding. The mother also noticed fast breathing and wheezing. Diagnosis and organism causing this?
"bronchiolitis" AND "RSV" AND "management"
| Feature | Significance |
|---|---|
| Age 6 months | Peak age for bronchiolitis (< 2 years, especially < 6 months) |
| 3-day URTI prodrome (cough, rhinorrhoea, low-grade fever) | Classic RSV starting as an upper respiratory infection |
| Progression to wheeze + tachypnea at day 3-4 | Virus tracking down to the small airways (bronchioles) |
| Poor feeding | Increased work of breathing makes coordinated suck-swallow-breathe impossible |
| Wheeze (not stridor) | Obstruction at the level of small airways, not the upper airway |
"RSV is the most common infectious agent [in bronchiolitis], although influenza virus, adenovirus, parainfluenza virus, human metapneumovirus, coronavirus, and human bocavirus also cause bronchiolitis."
- Swanson's Family Medicine Review
| Organism | Notes |
|---|---|
| RSV | #1 cause; peaks in winter/early spring |
| Human Metapneumovirus (hMPV) | #2 cause; similar clinical picture to RSV; tends to affect slightly older infants |
| Parainfluenza virus (types 1, 2, 3) | Also causes croup |
| Influenza virus | Seasonal |
| Adenovirus | Can cause more severe disease |
| Human bocavirus | Emerging pathogen |
| Rhinovirus | Common co-pathogen |
"Pathophysiologic features of bronchiolitis include inflammation, edema, and necrosis of the epithelial linings of the small airways. Increased production of mucus and bronchospasm are seen in conjunction with wheeze, cough, accessory muscle use, tachypnea, and rhinorrhoea."
- Swanson's Family Medicine Review

| Intervention | Recommendation |
|---|---|
| Oxygen (if SpO2 < 90-92%) | YES - mainstay |
| Nasal suctioning | YES - provides temporary benefit |
| Adequate hydration (IV/NG if feeding compromised) | YES |
| High-flow nasal cannula (HFNC) | Increasingly used in moderate-severe disease |
| Bronchodilators (salbutamol, epinephrine) | NOT routinely recommended (Cochrane review: no consistent benefit); trial appropriate in select moderate-severe cases |
| Corticosteroids | NOT recommended (no benefit in RCTs) |
| Antibiotics | NOT recommended (bacteremia risk only 0.2%; use only if confirmed bacterial co-infection) |
| Chest physiotherapy | NOT recommended |
| Ribavirin (aerosol) | Controversial; may be considered in very high-risk immunocompromised infants |
"The fatality rate among hospitalized infected infants is estimated to be 0.5%-1%; however, this rises higher in children receiving cancer chemotherapy, infants with congenital heart disease, and those with severe immunodeficiency."
- Sherris & Ryan's Medical Microbiology
Recent 2025 ALAT Consensus [PMID: 41714249] and 2025 Australasian Bronchiolitis Guideline [PMID: 40685806] confirm supportive care remains the cornerstone of management.
A 4-year-old girl is brought to the emergency department with a 2-day history of vomiting and diarrhea. Her mother reports that she has become very weak and has not passed urine since the morning. The child is also drowsy and refusing oral intake. Diagnosis and treatment?
| Feature | Interpretation |
|---|---|
| 2-day vomiting + diarrhea | Acute gastroenteritis - fluid and electrolyte losses |
| No urine since morning | Oliguria/anuria = severe volume depletion, kidneys maximally conserving water |
| Drowsy, weak | CNS effects of severe dehydration/electrolyte imbalance - a red flag |
| Refusing oral intake | Cannot self-correct dehydration - IV access mandatory |
| Age 4 years | High surface-area-to-volume ratio makes children rapidly dehydrated |
"Rotavirus is a common etiology of gastroenteritis leading to hospitalization of children from dehydration and lethargy."
- Yamada's Textbook of Gastroenterology
| Organism | Type | Notes |
|---|---|---|
| Rotavirus | Virus | #1 cause of severe gastroenteritis with hospitalization in children <5 years; watery diarrhoea, vomiting, low-grade fever; peaks in winter |
| Norovirus | Virus | Most common overall gastroenteritis cause in all ages; highly contagious; 68-90% of outbreak gastroenteritis |
| Adenovirus (types 40/41) | Virus | Enteric adenovirus; prolonged diarrhoea |
| Salmonella spp. | Bacteria | Fever + bloody diarrhoea; food-borne |
| Campylobacter jejuni | Bacteria | Bloody diarrhoea, cramping |
| E. coli (ETEC, EPEC) | Bacteria | Traveller's diarrhoea, infants |
| Staphylococcus aureus | Bacteria | Rapid onset vomiting (toxin-mediated, within 1-6 hrs) |
| Bacillus cereus | Bacteria | Fried rice; emetic or diarrhoeal toxin |
| Degree | Signs | Fluid Lost (Older Child) | Treatment |
|---|---|---|---|
| Mild | Thirst, slightly dry mucosae | 3-5% body weight | ORS 50-100 mL/kg over 2-4 hrs |
| Moderate | Tachycardia, CRT >2 sec, sunken eyes, absent tears, weak pulse | 6-9% body weight | ORS; IV if not tolerated |
| Severe | Abnormal mental status, lethargy, abnormal skin turgor, sunken fontanelle, hypotension | >9% body weight | 20-60 mL/kg NS IV bolus + labs |
"Standard therapy involves 20-mL/kg boluses of NS or lactated Ringer's solution infused over a 60-minute period each, until normalization of pulse, perfusion, and mental status occurs."
- Roberts & Hedges' Clinical Procedures in Emergency Medicine
| Test | Rationale |
|---|---|
| Serum electrolytes (Na, K, Cl, HCO3) | Hyponatraemia / hypernatraemia; hypokalaemia from diarrhoea |
| Blood glucose (URGENT) | >9% of severely dehydrated children have hypoglycaemia - give dextrose if low |
| Urea and creatinine | Assess for prerenal AKI (elevated BUN:Cr ratio >20:1) |
| Venous blood gas / lactate | Assess metabolic acidosis severity |
| FBC | Haemoconcentration; rule out sepsis |
| Urine output monitoring | Key indicator of fluid resuscitation success |
| Stool culture | If bloody diarrhoea or features of bacterial infection |
| Drug | Indication |
|---|---|
| Dextrose 10% 2 mL/kg IV | If blood glucose < 3.0 mmol/L (hypoglycaemia) |
| Potassium supplementation | If hypokalaemia confirmed on labs (do NOT give until urine output restored) |
| Antibiotics | NOT routinely indicated; only if confirmed bacterial cause (e.g., Salmonella with systemic features, Campylobacter, Shigella, C. difficile) |
| Zinc (WHO protocol) | 20 mg/day for 10-14 days in developing world settings; reduces diarrhoea duration |
| Loperamide / antidiarrhoeals | CONTRAINDICATED in children <5 years |
Immunological causes of glomerulonephritis and their mechanisms

"Two major mechanisms account for the presence of immune complexes in glomerular diseases. There may be ineffectual clearance of an antigen from an impaired immune response, as in chronic viral infections caused by hepatitis B or hepatitis C virus... More often, glomerular disease results from autoimmunity."
- Comprehensive Clinical Nephrology, 7th Edition
| Root Cause | Mechanism | Example Diseases |
|---|---|---|
| Persistent antigenemia | Chronic infection prevents antigen clearance; persistent humoral response creates circulating complexes | HBV nephropathy, HCV cryoglobulinaemia, post-streptococcal GN, malaria |
| Autoimmunity (loss of tolerance) | Self-reactive T and B cells escape deletion; molecular mimicry or danger signals trigger immune response to self-antigen | SLE (lupus nephritis), IgA nephropathy |
"The presence of glomerular inflammation is largely determined by the site of immune deposits. Immune deposits with direct access to the circulation (subendothelial and intrabasement membrane locations) are usually associated with leukocyte accumulation. Mesangial deposits elicit an intermediate response, whereas immune deposits in the subepithelial space generally are not associated with inflammatory cells."
- Comprehensive Clinical Nephrology, 7th Edition
| Deposit Location | Access to Circulation | Inflammatory Response | Diseases | IF Pattern |
|---|---|---|---|---|
| Subendothelial | Direct | Intense - neutrophils, monocytes, complement activation | Lupus nephritis (class III/IV), MPGN type I | Granular, "wire-loop" |
| Mesangial | Intermediate | Moderate - mesangial proliferation | IgA nephropathy, early lupus (class II), C3 glomerulopathy | Mesangial granular |
| Subepithelial | Shielded by GBM | Minimal cellular inflammation; complement mediates podocyte damage | Membranous nephropathy, post-infectious GN ("humps") | Granular peripheral ("lumpy-bumpy") |
| Intrabasement membrane | Direct | Severe | Goodpasture disease (linear, not granular) | Linear (ribbon-like) |
"Subendothelial immune complexes provoke leukocyte infiltration and glomerular crescent formation... In contrast, subepithelial immune complexes are shielded from the circulation by the GBM and do not induce inflammatory responses."
- Robbins & Cotran Pathologic Basis of Disease
"Alternative complement pathway activation occurs in the clinicopathologic entity called C3 glomerulopathy, which encompasses the entities of dense deposit disease and C3 glomerulonephritis."
- Robbins & Cotran Pathologic Basis of Disease

"T cells likely have a role in crescentic nephritis, becoming sensitized to endogenous or exogenous antigen and then recruiting macrophages that mediate crescent formation."
- Comprehensive Clinical Nephrology, 7th Edition
| Cell/Mediator | Role |
|---|---|
| Neutrophils | Release proteases (degrade GBM), ROS (cell damage), arachidonic acid metabolites (reduce GFR) |
| Macrophages | Release IL-1, TNF, MMP, TGF-β; main effectors in crescent formation |
| Platelets | Aggregate in injured glomeruli; release eicosanoids and growth factors |
| Mesangial cells | Become myofibroblast-like; proliferate; produce excess ECM |
| Podocytes | Foot process effacement when injured; lose slit diaphragm → massive proteinuria |
| C5a | Key chemotactic signal attracting neutrophils/monocytes |
| TGF-β | Drives matrix deposition and glomerulosclerosis |
| PDGF | Drives mesangial cell proliferation |

| GN Type | Immunological Mechanism | IF Pattern | Complement | Specific Marker |
|---|---|---|---|---|
| Post-streptococcal GN | Circulating immune complexes (streptococcal antigens) | Granular IgG + C3 ("starry sky") | Low C3 | ASO titre ↑ |
| Lupus nephritis | Immune complexes (DNA-anti-dsDNA); all Ig classes | Granular "full house" (IgG, IgA, IgM, C1q, C3) | Low C3, C4 | ANA, anti-dsDNA |
| IgA nephropathy | Mesangial IgA immune complexes (galactose-deficient IgA1) | Mesangial IgA dominant | Normal C3 | Serum galactose-deficient IgA1 ↑ |
| Membranous nephropathy | In situ subepithelial complexes (anti-PLA2R) | Granular IgG subepithelial | Normal or low C3 | Anti-PLA2R antibody |
| MPGN (type I) | Subendothelial immune complexes | Granular C3 ± IgG | Low C3 (and C4) | HCV, cryoglobulins |
| C3 glomerulopathy | Alternative complement pathway dysregulation | C3 only (no Ig) | Very low C3; normal C4 | C3 nephritic factor, Factor H mutation |
| Goodpasture disease | Anti-GBM IgG (anti-α3 type IV collagen) | Linear IgG | Normal | Anti-GBM antibody |
| ANCA-associated GN | ANCA-activated neutrophil injury | Pauci-immune (negative/trace) | Normal | PR3-ANCA or MPO-ANCA |
| Minimal change disease | T-cell-derived circulating factor (podocyte injury) | Negative (no deposits) | Normal | None (diagnosis of exclusion) |
Investigations required before starting hemodialysis
investigations required before starting hemodialysis pre-dialysis workup KDOQI guidelines
| Investigation | Purpose | Expected Finding in ESRD |
|---|---|---|
| Serum creatinine | Estimate GFR | Markedly elevated; GFR < 15 mL/min/1.73m² (CKD stage 5) |
| Blood urea nitrogen (BUN) / Urea | Uraemic load; pre-dialysis BUN needed to calculate Kt/V and URR | Elevated (BUN > 80-100 mg/dL typically) |
| eGFR (CKD-EPI or MDRD) | KDOQI: decision to initiate dialysis based primarily on symptoms + metabolic status, not a fixed GFR threshold | < 15 mL/min; clinical symptoms guide timing |
| 24-hour urine creatinine clearance | Confirms GFR, assesses residual renal function | Reduced |
| Serum cystatin C | More accurate GFR estimate in low muscle-mass patients | Elevated |
KDOQI (2015) recommends: "The decision to initiate maintenance dialysis should be based primarily on an assessment of attributable complications of kidney failure, including signs/symptoms of uremia, protein-energy wasting, and development of metabolic or volume disturbances refractory to medical therapy - rather than a specific GFR level."
| Investigation | Purpose |
|---|---|
| Urinalysis + microscopy | Proteinuria, haematuria, casts (RBC casts = GN; waxy casts = CKD); protein:creatinine ratio |
| 24-hr urine protein | Quantify proteinuria |
| Urine electrolytes (Na, K, urea) | Distinguish prerenal vs intrinsic renal failure |
| Renal biopsy (if cause unknown and kidneys not shrunken) | Histological diagnosis |
| Renal ultrasound | Kidney size, corticomedullary differentiation, obstruction, cysts - small shrunken kidneys = chronic irreversible disease |
| Anti-dsDNA, ANA | Lupus nephritis |
| ANCA (anti-PR3, anti-MPO) | Vasculitis-associated GN |
| Anti-GBM antibody | Goodpasture disease |
| C3, C4 complement | Low in immune complex disease (SLE, MPGN, post-strep) |
| Serum protein electrophoresis / serum free light chains | Myeloma-related kidney disease |
| HbA1c, fasting glucose | Diabetic nephropathy (most common cause of ESRD worldwide) |
| Blood pressure history / echocardiogram | Hypertensive nephropathy |
| Investigation | Purpose |
|---|---|
| Full blood count (FBC/CBC) | Anaemia of CKD (normochromic, normocytic); thrombocytopaenia in TTP/HUS; leucocytosis in infection |
| Peripheral blood smear | Microangiopathic haemolytic anaemia in HUS/TTP |
| Reticulocyte count | Assess erythropoietic response |
| Serum iron, ferritin, TIBC, transferrin saturation | Iron status before starting ESAs (erythropoiesis-stimulating agents); ferritin > 200 ng/mL and TSAT > 20% required before ESA therapy |
| Serum B12 and folate | Exclude nutritional anaemia |
| PTH (parathyroid hormone - intact) | Secondary hyperparathyroidism of CKD; drives renal osteodystrophy |
| Coagulation profile (PT, APTT, INR, bleeding time) | Uraemic platelet dysfunction; needed before vascular access surgery |
| Blood group and Rh typing | For potential transfusions; also important if kidney transplant is anticipated (sensitisation risk) |
| Crossmatch | If transfusion anticipated |
| Investigation | Target/Significance |
|---|---|
| Serum electrolytes (Na, K, Cl, HCO3) | Hyperkalaemia (life-threatening); metabolic acidosis (bicarb < 22 mEq/L) |
| Serum calcium | Hypocalcaemia (from reduced 1,25-OH2 Vit D synthesis) |
| Serum phosphate | Hyperphosphataemia (phosphate retention in CKD) |
| Serum magnesium | Hypermagnesaemia in CKD |
| Serum albumin | Marker of nutritional status and inflammation; hypoalbuminaemia = poor prognosis |
| Serum uric acid | Elevated in CKD; gout risk |
| Serum glucose / HbA1c | Diabetes management; HbA1c may be unreliable in severe anaemia |
| Lipid profile (cholesterol, TG, HDL, LDL) | Cardiovascular risk assessment; dyslipidaemia common in CKD |
| LFTs (ALT, AST, ALP, GGT, bilirubin) | Baseline before dialysis; hepatitis co-infection common in dialysis units |
| Serum alkaline phosphatase | Bone disease/renal osteodystrophy |
| Serum 25-OH Vitamin D | Vitamin D deficiency; drives secondary hyperparathyroidism |
| Thyroid function tests (TSH, free T4) | Hypothyroidism common in CKD; affects dialysis tolerance |
| Serology | Purpose |
|---|---|
| Hepatitis B surface antigen (HBsAg) | Active HBV infection - must dialyse in segregated area |
| Hepatitis B surface antibody (anti-HBs) | Immune status - if < 10 IU/L, vaccinate BEFORE starting dialysis (vaccine response is better with residual renal function) |
| Hepatitis B core antibody (anti-HBc IgG) | Past HBV exposure; inactive carrier status |
| Hepatitis C antibody (anti-HCV) | HCV seropositivity - segregate; treat with DAAs before/during dialysis |
| HCV RNA (PCR) | Confirm active HCV replication, especially if antibody positive |
| HIV antibody (anti-HIV 1 & 2) | Patients on dialysis require special precautions if positive |
| VDRL/RPR (syphilis screening) | Standard blood-borne infection screen |
| Tuberculosis screening (Mantoux / IGRA) | Immunosuppressed patients; prior to renal transplant listing |
| CMV IgG / IgM | Baseline; critical if transplant is anticipated |
| EBV serology | Transplant baseline |
| Varicella zoster antibody | Vaccinate seronegative patients before immunosuppression |
| Investigation | Purpose |
|---|---|
| ECG (12-lead) | Baseline rhythm; LVH (from longstanding hypertension); hyperkalaemia changes (peaked T waves, wide QRS) |
| Echocardiogram (2D + Doppler) | Left ventricular hypertrophy (present in >75% of ESRD patients); ejection fraction; pericardial effusion; valvular calcification |
| Chest X-ray | Cardiomegaly; pulmonary oedema; pleural effusions; pericardial effusion |
| Blood pressure (bilateral) | Hypertension management; bilateral BP for AVF planning (use arm with higher BP) |
| Peripheral pulse assessment + ABI | Peripheral vascular disease - impacts AVF placement success |
| Troponin I/T (baseline) | Often chronically elevated in CKD; need baseline to interpret future acute elevations |
| NT-proBNP / BNP | Cardiac function; volume status |
| Investigation | Purpose |
|---|---|
| Venous duplex ultrasound (forearm + upper arm veins) | Map veins for AVF creation; vein diameter ≥ 2 mm and depth ≤ 6 mm needed for successful AVF; identify stenoses from previous cannulation |
| Arterial duplex ultrasound / Allen's test | Assess radial/brachial artery diameter and flow; Allen's test rules out hand ischaemia |
| CT venography / MR venography | If central venous stenosis suspected (prior central lines); assess subclavian/SVC patency for tunnelled catheter placement |
| Chest X-ray | Central venous anatomy; prior catheter-related stenosis |
Per KDOQI: An AV fistula should ideally be placed at least 6 months before anticipated start of hemodialysis to allow adequate time for maturation. Patients who reach CKD stage 4 (GFR < 30 mL/min) should begin access planning.
| Investigation | Purpose |
|---|---|
| Serum albumin | Malnutrition marker; target > 4.0 g/dL |
| Serum pre-albumin (transthyretin) | Sensitive nutritional marker; short half-life (2 days) |
| Serum transferrin | Nutritional iron-binding protein |
| Normalised protein catabolic rate (nPCR) | Dietary protein intake; calculated from pre-dialysis BUN; target 1.0-1.2 g/kg/day |
| Anthropometrics (BMI, mid-arm circumference) | Sarcopaenia assessment |
| Investigation | Purpose |
|---|---|
| HLA typing (A, B, DR) | Required for transplant matching; place on waiting list |
| Panel reactive antibody (PRA) | Degree of sensitisation from prior transfusions/pregnancies/transplants |
| Blood group (ABO) | Transplant compatibility |
| Domain | Key Tests |
|---|---|
| Renal function | Creatinine, BUN/urea, eGFR, 24-hr urine |
| Cause of CKD | Urinalysis, USS kidneys, autoimmune serology |
| Haematology | FBC, iron studies, coagulation, blood group |
| Electrolytes/metabolic | Na, K, HCO3, Ca, PO4, glucose, lipids, albumin, PTH |
| Infection screen | HBsAg, anti-HBs, anti-HCV + HCV PCR, HIV, VDRL |
| Cardiac | ECG, echo, CXR, BP, troponin baseline |
| Vascular access | Venous and arterial duplex USS |
| Nutrition | Albumin, pre-albumin, nPCR |
| Transplant work-up | HLA typing, PRA (if candidate) |
Management of acute atypical pneumonia
"atypical pneumonia" AND "macrolide" AND "treatment guidelines"
"community acquired pneumonia" AND "guidelines" AND "azithromycin"
IDSA ATS 2019 community acquired pneumonia guidelines atypical pneumonia treatment macrolide doxycycline
| Organism | Key Features |
|---|---|
| Mycoplasma pneumoniae | Most common atypical; young adults; gradual onset; dry cough; extrapulmonary manifestations (rash, haemolytic anaemia, CNS) |
| Chlamydophila (Chlamydia) pneumoniae | Gradual onset; sore throat + hoarseness before cough (biphasic illness); elderly |
| Legionella pneumophila | Severe; Pontiac fever or Legionnaires' disease; water source; diarrhoea, hyponatraemia, high LDH, high ferritin |
| Coxiella burnetii | Q fever; occupational (abattoir, farm); systemic illness, hepatitis, culture-negative endocarditis |
| Chlamydia trachomatis | Neonates; staccato cough, afebrile pneumonitis |
| Francisella tularensis | Tularaemia pneumonia; rare; bioterrorism concern |
"Levofloxacin or azithromycin are preferred for treatment [of Legionella]."
- Sherris & Ryan's Medical Microbiology 8th Edition
| Feature | Typical (e.g., S. pneumoniae) | Atypical (Mycoplasma, Chlamydophila, Legionella) |
|---|---|---|
| Onset | Acute (hours) | Gradual (days to weeks) |
| Cough | Productive, purulent | Dry, hacking, nonproductive |
| Fever | High, with rigors | Low-grade (except Legionella) |
| Pleuritic pain | Common | Uncommon |
| Appearance | Toxic | "Walking pneumonia" - not toxic |
| CXR | Lobar/segmental consolidation | Bilateral interstitial/patchy infiltrates |
| WBC | Leukocytosis (neutrophilia) | Normal or mildly elevated |
| Extrapulmonary | Rare | Common - see below |
| Response to β-lactams | Good | None |
| Investigation | Notes |
|---|---|
| Clinical diagnosis (empirical) | Mainstay in ED and outpatient settings; specific testing rarely changes acute management |
| CXR | Bilateral interstitial or lower lobe patchy infiltrates; may be worse than clinical examination suggests |
| CT chest | More sensitive; ground-glass opacities, tree-in-bud pattern |
| Multiplex PCR (nasopharyngeal swab / BAL) | BioFire and similar panels detect Mycoplasma, Chlamydophila, Legionella, influenza simultaneously - increasingly the preferred rapid diagnostic |
| Legionella urinary antigen | Detects serogroup 1 (accounts for ~80% of cases); highly sensitive and specific; rapid result; essential for suspected Legionella |
| Pneumococcal urinary antigen | Distinguishes from typical pneumonia |
| Serology (acute + convalescent titres, 4-fold rise) | Mycoplasma IgM/IgG; Chlamydophila IgM/IgG; Legionella IFA; Coxiella CF - takes 4-6 weeks; not useful for acute management |
| Cold agglutinins (IgM) | >1:64 suggests Mycoplasma; non-specific; rarely used now |
| Sputum culture | Atypicals do not grow on standard media; requires special conditions |
| Blood cultures | Mandatory in hospitalised patients (low yield for atypicals but rules out bacteraemia) |
| FBC, CRP, procalcitonin | WBC often normal in atypical; procalcitonin typically lower than bacterial typical pneumonia |
| LFTs, Na, LDH, ferritin | Legionella: hyponatraemia, elevated LDH, elevated ferritin, deranged LFTs are classic |
| ABG / pulse oximetry | Severity assessment |
| Drug | Dose | Duration |
|---|---|---|
| Amoxicillin 1 g TDS | First choice (covers typical + some atypical cross-coverage) | 5 days |
| Doxycycline 100 mg BD | Excellent atypical coverage; preferred if atypical suspected; well tolerated | 5 days |
| Azithromycin 500 mg day 1, then 250 mg od | Covers all atypicals; use only if pneumococcal macrolide resistance <25% locally | 5 days |
| Clarithromycin 500 mg BD | Alternative macrolide | 5 days |
Per IDSA 2019: "For healthy outpatient adults without comorbidities, we recommend amoxicillin 1 g TDS, or doxycycline 100 mg BD, or a macrolide (only in areas with pneumococcal resistance <25%)."
| Regimen | Drugs |
|---|---|
| β-lactam + macrolide | Amoxicillin-clavulanate OR cefuroxime + azithromycin/clarithromycin |
| β-lactam + doxycycline | Amoxicillin-clavulanate + doxycycline |
| Respiratory fluoroquinolone monotherapy | Levofloxacin 750 mg od OR moxifloxacin 400 mg od |
| Regimen | Drugs | Notes |
|---|---|---|
| β-lactam + macrolide | IV/PO ceftriaxone 1-2 g od + azithromycin 500 mg od | Standard first-line |
| β-lactam + doxycycline | Ceftriaxone + doxycycline 100 mg BD | When macrolide intolerant or QTc prolonged |
| Respiratory fluoroquinolone monotherapy | IV/PO levofloxacin 750 mg od OR moxifloxacin 400 mg od | Equivalent efficacy to combination |
Recent meta-analysis [PMID: 37385561, 2023]: Respiratory fluoroquinolone monotherapy vs β-lactam + macrolide combination showed comparable outcomes in hospitalised CAP - supports guideline flexibility.
| Regimen | Drugs |
|---|---|
| Standard severe CAP | IV β-lactam (ceftriaxone or ampicillin-sulbactam) + IV azithromycin 500 mg od |
| Alternative severe CAP | IV β-lactam + IV levofloxacin 750 mg od (if macrolide contraindicated) |
| + MRSA suspected | Add vancomycin or linezolid |
| + Pseudomonas suspected | Switch to antipseudomonal β-lactam (piperacillin-tazobactam or cefepime) |
| Drug | Dose | Duration |
|---|---|---|
| Azithromycin (first-line) | 500 mg day 1, 250 mg od | 5 days |
| Doxycycline (first-line) | 100 mg BD | 5-7 days |
| Levofloxacin | 750 mg od | 5 days |
| Moxifloxacin | 400 mg od | 5 days |
| No cell wall - completely ineffective | - | |
| Emerging in Asia/Europe; use doxycycline or fluoroquinolone | - |
| Drug | Dose | Duration |
|---|---|---|
| Doxycycline (first-line) | 100 mg BD | 10-14 days (longer - intracellular organism) |
| Azithromycin | 500 mg od | 5-7 days |
| Levofloxacin | 750 mg od | 7-14 days |
| Drug | Dose | Duration | Notes |
|---|---|---|---|
| Levofloxacin (preferred) | 750 mg IV/PO od | 5-14 days | Fluoroquinolones achieve highest intracellular concentrations; clinical cure faster |
| Azithromycin (preferred) | 500 mg IV/PO od | 5-10 days | Good intracellular penetration; IV initially for severe cases |
| Moxifloxacin | 400 mg od | 10-14 days | Alternative |
| Less preferred for Legionella | - | Lower intracellular activity vs fluoroquinolones | |
| Ineffective (intracellular organism) | - | - |
"Levofloxacin or azithromycin are preferred for treatment [of Legionella]."
- Sherris & Ryan's Medical Microbiology 8th Edition
| Drug | Dose | Duration |
|---|---|---|
| Doxycycline (drug of choice) | 100 mg BD | 14 days (acute Q fever) |
| Doxycycline + hydroxychloroquine | Long-term | 18+ months (Q fever endocarditis) |
| Measure | Details |
|---|---|
| Oxygen therapy | Maintain SpO2 > 94% (>88% in COPD); high-flow nasal cannula or NIV for hypoxic respiratory failure |
| Antipyretics | Paracetamol/ibuprofen for fever and pleuritic pain |
| IV fluids | If tachycardic, hypotensive, or not tolerating oral intake |
| Adequate hydration | Promotes mucociliary clearance |
| Chest physiotherapy | In severe cases with mucus retention |
| Antitussives | For severe, distressing dry cough (dextromethorphan, codeine); use cautiously |
| Corticosteroids | Not routinely recommended; IDSA 2019 suggests consideration in severe CAP with refractory septic shock (prednisolone 40-50 mg/day for 5-7 days) |
| Bronchodilators | If wheeze/bronchospasm (common with Mycoplasma) |
| Score | Mortality | Management |
|---|---|---|
| 0-1 | < 3% | Outpatient |
| 2 | 9% | Short inpatient stay or supervised outpatient |
| 3-5 | 15-40% | Hospital admission; consider ICU if ≥ 4 |
Atypical CAP suspected
│
▼
Severity assessment
(CURB-65 / PSI)
│
┌─────┴──────┐
│ │
Outpatient Inpatient
│ │
▼ ┌───┴────────┐
Doxycycline │ │
100mg BD Non-severe Severe/ICU
OR │ │
Azithromycin│ β-lactam + │ β-lactam +
500/250mg Azithromycin │ IV azithromycin
OR OR β-lactam +│ OR
Respiratory │ doxycycline│ β-lactam +
FQL OR FQL mono │ IV levofloxacin
5 days 5 days 5-14 days