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Biochemistry Notes - Purine & Pyrimidine Metabolism
Source: Harper's Illustrated Biochemistry, 32nd Ed. (Chapters 32-33)
1. GOUT (5 Marks)
Definition
Gout is a clinical condition arising from hyperuricemia - elevated serum uric acid - leading to deposition of monosodium urate crystals in joints and soft tissues, causing an acute inflammatory arthritis called gouty arthritis.
Biochemical Background: Uric Acid Formation
Humans convert adenosine and guanosine to uric acid (the end product of purine catabolism):
Adenosine → (adenosine deaminase) → Inosine → (purine nucleoside phosphorylase) → Hypoxanthine → (xanthine oxidase) → Xanthine → (xanthine oxidase) → Uric acid
Guanosine → Guanine → (xanthine oxidase) → Xanthine → Uric acid
Humans lack uricase, so unlike other mammals, we cannot convert uric acid to the soluble product allantoin. Uric acid is thus poorly soluble and precipitates.
Pathogenesis
When serum urate levels exceed the solubility limit, sodium urate crystallizes in soft tissues and joints, triggering an inflammatory reaction (gouty arthritis).
Causes of hyperuricemia:
| Mechanism | Example |
|---|
| Overproduction of purines | Defects in PRPP synthetase (elevated Vmax, increased affinity for ribose-5-phosphate, or resistance to feedback inhibition) |
| Reduced renal excretion | Most common - abnormalities in renal handling of uric acid |
| Increased tissue turnover | Cancer, psoriasis, chemotherapy |
Genetic Defects Causing Gout
Various genetic defects in PRPP synthetase (reaction 1 of purine synthesis) present clinically as gout:
- Elevated Vmax of enzyme
- Increased affinity for ribose-5-phosphate
- Resistance to feedback inhibition
- All result in overproduction and overexcretion of purine catabolites
Classification
- Primary gout - unknown enzyme defects; may have normal or increased uric acid synthesis with decreased/normal excretion
- Secondary gout - due to known diseases (cancer, psoriasis, Lesch-Nyhan syndrome, von Gierke disease) that enhance tissue turnover or purine production
Treatment Basis (Biochemistry)
- Allopurinol - inhibits xanthine oxidase, reducing uric acid formation (xanthine and hypoxanthine accumulate instead, which are more soluble)
2. LESCH-NYHAN SYNDROME (5 Marks)
Definition
Lesch-Nyhan syndrome is an X-linked recessive disorder of purine metabolism characterized by overproduction hyperuricemia, neurological abnormalities, and self-mutilation.
Enzyme Defect
Deficiency of HPRT (Hypoxanthine-Guanine PhosphoRibosylTransferase)
- Gene: HPRT1 (X-linked)
- HPRT is a purine salvage enzyme that normally recycles hypoxanthine and guanine back to IMP and GMP respectively
Biochemical Mechanism
HPRT normally catalyzes:
Hypoxanthine + PRPP → IMP + PPi
Guanine + PRPP → GMP + PPi
When HPRT is absent/deficient:
- Hypoxanthine and guanine cannot be salvaged → they are degraded to uric acid via xanthine oxidase
- PRPP accumulates (since it is not consumed in salvage) → this excess PRPP drives the de novo purine synthesis pathway → further overproduction of purines → further hyperuricemia
Clinical Features (5 Marks - include these)
| Feature | Description |
|---|
| Hyperuricemia | Overproduction type |
| Uric acid lithiasis | Kidney stones from uric acid |
| Gout | Recurrent gouty arthritis |
| Intellectual disability | Neurological |
| Choreoathetosis | Movement disorder |
| Spasticity | Neurological |
| Self-mutilation | Pathognomonic - biting fingers, lips, tongue |
| Onset | Neonatal - orange crystalline deposits in diapers (uric acid) |
Mutations in HPRT1 include:
- Deletions
- Frameshift mutations
- Base substitutions
- Aberrant mRNA splicing
Treatment
- Allopurinol controls hyperuricemia and gout but does not correct the neurological deficits
- No definitive cure
3. OROTIC ACIDURIA (5 Marks)
Definition
Orotic aciduria is a rare autosomal recessive disorder of pyrimidine biosynthesis characterized by excessive excretion of orotic acid in urine, megaloblastic anemia, and growth retardation.
Normal Pyrimidine Biosynthesis (Key Steps)
The de novo pyrimidine pathway:
- Carbamoyl phosphate synthetase II (cytosolic)
- Aspartate transcarbamoylase
- Dihydroorotase → dihydroorotate
- Dihydroorotate dehydrogenase → orotate
- Orotate phosphoribosyltransferase (OPRT) → orotidylate (OMP) [Reaction 5]
- Orotidylate decarboxylase (ODCase) → UMP [Reaction 6]
Types of Orotic Aciduria
| Type | Enzyme Deficient | Reactions Affected |
|---|
| Type I (classic) | Both OPRT and ODCase | Reactions 5 & 6 |
| Type II (rarer) | ODCase only | Reaction 6 only |
In both types, orotic acid accumulates and is excreted in urine.
Clinical Features
- Megaloblastic anemia (not responsive to B12 or folate)
- Growth retardation / failure to thrive
- Orotic acid crystals in urine
- Intellectual disability (if untreated)
Biochemical Basis of Anemia
- Defective pyrimidine synthesis → insufficient UMP → insufficient thymidylate for DNA synthesis → impaired cell division → megaloblastic anemia
Secondary Causes of Orotic Aciduria
1. Reye Syndrome:
- Severely damaged mitochondria cannot utilize carbamoyl phosphate
- Carbamoyl phosphate leaks to cytosol → cytosolic overproduction of orotic acid
2. Ornithine Transcarbamoylase (OTC) Deficiency (Urea Cycle defect):
- Deficiency of liver mitochondrial OTC → excess carbamoyl phosphate exits to cytosol → stimulates pyrimidine biosynthesis → orotic acid, uracil, and uridine excreted
- Mild orotic aciduria, increased by high-nitrogen diet
3. Drug-Induced Orotic Aciduria:
| Drug | Mechanism |
|---|
| Allopurinol | Acts as alternate substrate for OPRT (reaction 5); resulting nucleotide inhibits ODCase (reaction 6) → orotic aciduria + orotidinuria |
| 6-Azauridine | Converted to 6-azauridylate → competitively inhibits ODCase (reaction 6) → orotic acid and orotidine excreted |
Treatment
- Uridine administration (bypasses the block) - corrects anemia and growth
- Uridine is phosphorylated to UMP directly, bypassing the defective enzymes
Quick Comparison Table (Exam Ready)
| Feature | Gout | Lesch-Nyhan | Orotic Aciduria |
|---|
| Type | Purine catabolism | Purine salvage defect | Pyrimidine synthesis defect |
| Enzyme defect | PRPP synthetase (or renal) | HPRT (HPRT1 gene) | OPRT and/or ODCase |
| Key metabolite ↑ | Uric acid | Uric acid (+ PRPP) | Orotic acid |
| Inheritance | Multifactorial / X-linked | X-linked recessive | Autosomal recessive |
| Key clinical sign | Gouty arthritis, tophi | Self-mutilation | Megaloblastic anemia |
| Treatment | Allopurinol | Allopurinol (partial) | Uridine |
Source: Harper's Illustrated Biochemistry, 32nd Ed., Chapter 33 (Nucleotide Metabolism), pp. 354-358