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Your Complete Clinical Biochemistry Exam Notes are Ready!

ClinicalBiochem UnitsVI X ExamNotes

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UNIT VI — NUCLEIC ACID METABOLISM (10 Marks)

Key Points

  • Nucleotide = Nitrogenous Base + Pentose Sugar + Phosphate group
  • Purines (A, G) = double ring; Pyrimidines (C, T, U) = single ring
  • Catabolism: Purines → Uric acid | Pyrimidines → CO2 + NH3 + Beta-alanine

De Novo Purine Synthesis Flowchart

Ribose-5-P (HMP shunt)
       ↓
    PRPP (PRPP synthetase)
       ↓
    PRA (amidoPRTase — RATE-LIMITING STEP)
       ↓
   10 more steps (Gly, Gln, Asp, CO2, Formate)
       ↓
    IMP (Inosine Monophosphate) — 1st purine
       ↓              ↓
   AMP (2 steps)   GMP (2 steps)
       ↓              ↓
   ATP            GTP → DNA/RNA

De Novo Pyrimidine Synthesis Flowchart

CO2 + Glutamine + ATP → Carbamoyl phosphate (CPS II — cytoplasmic)
       ↓
Carbamoyl phosphate + Aspartate
       ↓
   Dihydroorotate → Orotate
       ↓
   Orotate + PRPP → OMP
       ↓
   OMP → UMP (1st pyrimidine nucleotide)
       ↓           ↓
   UTP → CTP     dUDP → dTMP

Salvage Pathway

EnzymeReactionDisease if Deficient
HGPRTHypoxanthine/Guanine + PRPP → IMP/GMPLesch-Nyhan Syndrome (self-mutilation, gout)
ADAAdenosine → InosineSCID (severe combined immunodeficiency)

DNA Replication (Semi-Conservative)

Helicase (unwinds) → SSB proteins (stabilize) → Primase (RNA primer)
→ DNA Pol III [Leading strand: continuous | Lagging strand: Okazaki fragments]
→ DNA Pol I (removes primers) → DNA Ligase (seals) → 2 daughter DNA molecules
Exam Answer = 10 marks: Intro (1) + Bases table (2) + Purine flowchart (2) + Pyrimidine flowchart (2) + Salvage pathway (2) + DNA replication (1)

UNIT VII — INTRODUCTION TO CLINICAL CHEMISTRY (10 Marks)

Kidney Function

  • GFR = 125 mL/min; measured by Creatinine Clearance
  • Formula: Clearance = (Urine Creatinine × Urine Volume) / Serum Creatinine
  • Normal: 80-120 mL/min

NPN (Non-Protein Nitrogen) Constituents

NPN CompoundNormal Blood ValueDisease if Elevated
Urea (BUN)10-40 mg/dLRenal failure, dehydration
Creatinine0.6-1.2 mg/dLRenal disease (best GFR marker)
Uric acid3.5-7.2 mg/dLGout, Lesch-Nyhan
Ammonia15-45 mcg/dLLiver failure, Reye syndrome

Abnormal Urine Findings

FindingTermCause
GlucoseGlycosuriaBlood glucose >180 mg/dL (diabetes)
ProteinProteinuriaNephrotic syndrome
KetonesKetonuriaDKA, starvation
BilirubinBilirubinuriaObstructive jaundice

Urinary Stones (Calculi)

  • Calcium Oxalate (80%) — most common, hard, radiopaque
  • Uric Acid — radiolucent (invisible on X-ray), associated with gout
  • Cystine — rare, cystinuria (amino acid transport defect)

UNIT VIII — LIVER FUNCTION TESTS (10 Marks)

Functions of Liver — Mnemonic: MEDS-PC

  • Metabolism (glucose, protein, lipid)
  • Excretion (bilirubin, bile)
  • Detoxification (ammonia → urea, drugs)
  • Synthesis (albumin, clotting factors I, II, V, VII, IX, X)
  • Production (bile acids from cholesterol)
  • Conjugation (bilirubin + glucuronic acid)

Bilirubin Metabolism Flowchart

Haemoglobin (RBC breakdown)
       ↓
Haem → Biliverdin → Unconjugated Bilirubin (indirect, fat-soluble, TOXIC)
       ↓ binds Albumin → transported to liver
Liver: UDP-glucuronyltransferase
       ↓
Conjugated Bilirubin (direct, water-soluble) → secreted into bile
       ↓ intestine
Urobilinogen → Stercobilin (brown stool) | some reabsorbed → Urobilin (yellow urine)

3 Types of Jaundice

FeaturePre-hepaticHepaticPost-hepatic
CauseExcess RBC destructionHepatitis/cirrhosisBile duct blockage
Unconjugated Bil↑↑Normal
Conjugated BilNormal↑↑
Urine bilirubinAbsentPresentPresent (dark)
StoolDarkPaleClay-coloured
ALPNormalElevatedVery HIGH

SGOT vs SGPT

  • SGPT (ALT) = Alanine Aminotransferase = liver-specific (most sensitive)
  • SGOT (AST) = found in liver, heart, muscle, kidney
  • De Ritis Ratio = AST/ALT: >2 = alcoholic liver disease; <1 = viral hepatitis

UNIT IX — LIPID PROFILE TESTS (10 Marks)

Lipoproteins Table

LipoproteinDensityMain ContentFunction
ChylomicronsLowest90% TGDietary fat gut → tissues
VLDLVery Low55% TGEndogenous TG liver → tissues
LDLLow45% CholCholesterol to cells (BAD)
HDLHigh50% ProteinReverse cholesterol transport (GOOD)

Total Cholesterol — Liebermann-Burchard Method

Serum + Acetic Anhydride + H2SO4
       ↓
Green colour develops
       ↓
Read at 620 nm → Calculate from standard curve
Normal: <200 mg/dL

LDL Calculation — Friedewald Formula

LDL = Total Cholesterol - HDL - (Triglycerides / 5)
Valid only when TG <400 mg/dL

RIA (Radioimmunoassay)

Labelled Ag* + Unknown Ag + Limited Ab
       ↓ Competition for binding
Ag*-Ab (bound) separated from free Ag*
       ↓
Measure radioactivity (Gamma counter)
More Ag in sample → Less Ag* bound → Less radioactivity → Higher concentration
  • Advantage: Extremely sensitive (detects picograms), highly specific
  • Disadvantage: Radioactive hazard, expensive, short shelf life

ELISA (Sandwich Type)

Ab1 coated on microtitre plate
       ↓ + Patient sample
Ag binds Ab1 (wash)
       ↓ + Enzyme-linked Ab2
Sandwich formed (wash)
       ↓ + Substrate (TMB)
Coloured product → Stop with H2SO4
       ↓
Read absorbance at 450 nm → Concentration
  • Advantage: No radioactivity, safe, cheap, automated

UNIT X — ELECTROLYTES (10 Marks)

Body Fluid Compartments

Compartment% Body WtDominant Ion
ICF (Intracellular)40%K+, Mg2+, HPO4-
ECF (Extracellular)20%Na+, Cl-, HCO3-

Normal Values (Memory Trick: 135-145-95-3.5-5)

  • Na+ = 135-145 mEq/L
  • K+ = 3.5-5.0 mEq/L
  • Cl- = 95-105 mEq/L

Aldosterone / RAAS Flowchart

Low BP / Low Na+ → Kidney JG cells → Renin
       ↓
Angiotensinogen → Angiotensin I → (ACE) → Angiotensin II
       ↓
Adrenal cortex → Aldosterone
       ↓
DCT/CD: ↑ Na+ reabsorption + ↑ K+ excretion + Water retention
       ↓
BP and ECF volume restored

Hyponatraemia vs Hypernatraemia

FeatureHyponatraemia (Na+ <135)Hypernatraemia (Na+ >145)
CauseSIADH, heart failure, cirrhosisDehydration, diabetes insipidus
SymptomsHeadache, confusion, seizuresThirst, fever, restlessness
TreatmentFluid restriction / hypertonic salineFree water replacement

ORS Composition (WHO)

  • NaCl + KCl + Sodium Citrate + Glucose (drives Na+ absorption in gut)

PDF includes:

  • Color-coded flowcharts for every pathway
  • Complete tables for every topic
  • Exam answer templates showing exactly how to score all 10 marks per question
  • Full-page MIND MAP comparing all 5 units side by side
  • Last-Minute Summary Table at the end

ClinicalBiochem UnitsVI X ExamNotes

PDF Document · PDF

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