[25/04, 8:11 am] Dheeraj Nmc: Calcium homeostasis Ureacycle diagram Iron absorbtion and mucosal block theory Leschnyhan syndrome and oritic aciduria Products obtain from glycine Purine catabolism Transamination and deamination Vandenberg reaction [25/04, 8:11 am] Dheeraj Nmc: Kwashorkar and marasmus Phenylketonuria Rickets Scurvy Troseas sign [25/04, 8:11 am] Dheeraj Nmc: Essays: Vitamin D Vitamin C B12 Calcium

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Quick-Revision Summary Table

TopicKey Fact to Remember
Calcium homeostasisPTH ↑Ca²⁺; Calcitonin ↓Ca²⁺; Calcitriol ↑Ca²⁺ absorption
Urea cycle3 ATP; NH₄⁺ + Aspartate → Urea; OTC most common defect
Iron absorptionDMT-1 entry; Ferroportin exit; Hepcidin regulates ferroportin
Mucosal blockExcess iron trapped as mucosal ferritin → shed with enterocyte
Lesch-NyhanHGPRT deficiency; X-linked; gout + self-mutilation
Orotic aciduriaUMP synthase deficiency; megaloblastic anemia + orotic crystals
Glycine productsPurines, porphyrins, creatine, bile salts, GSH, hippurate, serine
Purine catabolism→ Uric acid (xanthine oxidase); allopurinol inhibits XO
TransaminationPLP cofactor; ALT/AST; all amino → glutamate → NH₄⁺ (GDH)
Van den BerghDirect = conjugated; Indirect = unconjugated (needs alcohol)
KwashiorkorProtein deficiency; edema, fatty liver, ↓albumin
MarasmusCalorie+protein deficiency; wasting, no edema
PKUPAH deficiency; AR; mousy odor; intellectual disability
RicketsVit D def; ↑ALP; rachitic rosary, craniotabes, bow legs
ScurvyVit C def; bleeding gums, perifollicular hemorrhage, no collagen
Trousseau's signBP cuff → carpal spasm → hypocalcemia
Vitamin D7-DHC → skin → liver 25-OH → kidney 1,25-OH (active)
Vitamin CCollagen (prolyl hydroxylase), iron absorption, antioxidant
Vitamin B12Methylcobalamin + adenosylcobalamin; ↑MMA + SACD; IF needed
Calcium99% bone; PTH/VitD regulate; tetany if low; stones if high
Sources: Basic Medical Biochemistry (Lippincott), Ganong's Review of Medical Physiology, Harper's Illustrated Biochemistry, Harrison's Principles of Internal Medicine, Robbins Pathology

[24/04, 1:18 pm] +91 62623 35757: Minerals: Essays: Iron Calcium Short notes: Flurosis Mucosal block theory Menkey’s syndrome Wilson’s disease Potassium homeostasis Functions of zinc [24/04, 1:18 pm] +91 62623 35757: Nucleotide Denovo synthesis of purines Catabolism of purines Gout Hyperurecemia Regulation of pyramidine synthesis [24/04, 1:18 pm] +91 62623 35757: Nutrition Respiratory quotient Dietary fibres BMR and affecting factors Nitrogen balance and effecting factors Peotein energy malnutrition Obesity Glycemic index Limiting amino acid [24/04, 1:18 pm] +91 62623 35757: Vitamins: A,D,B1,B12,C,pyridoxine Clinicals: Beri beri Wernicke korsakoff syndrome Pellagra Hypervitaminosis Folate trap Rickets [24/04, 1:18 pm] +91 62623 35757: Heme: Hemoglobin structure Heme synthesis and its regulation and degradation Porphyrias Hemoglobinopathies Jaundice Fate of bilirubin Thalassemia Sickle cell anemia Conjugated and unconjugated hyperbilirubinemia [24/04, 1:18 pm] +91 62623 35757: Proteins: Ammonia Urea cycle Phenylalanine Tyrosine Tryptophan Glycine Trans methylation reactions Metabolic disorders of branched amino acids One carbon metabolism Polyamines [24/04, 1:18 pm] +91 62623 35757: Clinicals: Phenylketonuria Alkaptonuria Tyrosinemia Carcinoid syndrome Hartnup disease Homocystinuria Aminoaciduria

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All 7 topic clusters are covered. Here's a quick orientation guide to these notes:

How to Use These Notes for Exam

For Essays (Iron, Calcium): Iron essay covers distribution → absorption → transport → storage → regulation (IRE-IRP) → deficiency → overload. Use the full pathway diagrams.
For Short Notes (2–5 marks): Focus on the table entries and bullet points per topic. For Wilson's and Menkes — the ATP7A vs ATP7B distinction is the most-tested fact.
High-yield 1-liners to memorise:
  • Menkes = ATP7A, X-linked, Cu deficiency (kinky hair, neurodegeneration)
  • Wilson's = ATP7B, AR, Cu accumulation (KF rings, liver disease)
  • AIP = PBG deaminase deficiency → ↑ ALA+PBG → no photosensitivity
  • PCT = Uroporphyrinogen decarboxylasephotosensitivity, most common porphyria
  • Sickle cell = Glu→Val at β-6 → HbS polymerizes when deoxygenated
  • β-thal major = ↑ HbA₂ (> 3.5%) on electrophoresis
  • Homocystinuria = lens dislocation downward (Marfan's = upward)
  • Hartnup = neutral AA transporter → pellagra + ataxia; treat with nicotinamide
  • Carcinoid = ↑ urinary 5-HIAA; flushing + diarrhea + right heart valve disease
  • Folate trap = B12 deficiency traps folate as 5-methyl-THF → megaloblastic anemia

Porphyrias

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Excellent — I now have comprehensive, textbook-verified data from Harrison's (22e) and Tietz directly. Here are complete porphyria notes:

PORPHYRIAS — Complete Study Notes


Definition

Porphyrias are a group of inherited (rarely acquired) metabolic disorders caused by enzyme deficiencies in the heme biosynthetic pathway, leading to accumulation of toxic porphyrin precursors (ALA, PBG) or porphyrins in tissues, urine, and feces.

Heme Synthesis Pathway — Full Sequence

(Location = MIT = mitochondria; CYT = cytosol)
Step 1: Glycine + Succinyl-CoA → δ-ALA              [ALAS; MIT; rate-limiting; PLP cofactor]
Step 2: 2× ALA → Porphobilinogen (PBG)               [ALA dehydratase = ALAD; CYT; inhibited by LEAD]
Step 3: 4× PBG → Hydroxymethylbilane (HMB)          [HMB synthase = PBG deaminase; CYT]
Step 4: HMB → Uroporphyrinogen III                   [URO synthase; CYT]
Step 5: Uroporphyrinogen III → Coproporphyrinogen III [URO decarboxylase = UROD; CYT]
Step 6: Coproporphyrinogen III → Protoporphyrinogen IX [COPRO oxidase; MIT]
Step 7: Protoporphyrinogen IX → Protoporphyrin IX    [PROTO oxidase = PPOX; MIT]
Step 8: Protoporphyrin IX + Fe²⁺ → HEME             [Ferrochelatase = FECH; MIT; inhibited by LEAD]
Each step blocked = one porphyria (except ALAS1 — no human porphyria from deficiency; ALAS2 gain-of-function = XLP)

Classification

Two main axes:

Axis 1: Site of enzyme defectAxis 2: Main clinical manifestation
Hepatic — defect in liverAcute (Neurovisceral) — ALA/PBG accumulate → neurological
Erythropoietic — defect in bone marrowCutaneous (Photosensitive) — Porphyrins in skin → photosensitivity

Master Classification Table

(From Harrison's 22e & Tietz Laboratory Medicine 7e)
PorphyriaAbbrDeficient EnzymeGeneInheritanceTypeNeurovisceralCutaneous
ALA dehydratase deficiencyADPALA dehydratase (ALAD)ALADARHepatic
Acute Intermittent PorphyriaAIPHMB synthase (PBG deaminase)HMBSADHepatic
Porphyria Cutanea TardaPCTURO-decarboxylase (UROD)URODComplex (20% AD; 80% acquired)Hepatic✓ (blistering)
Hereditary CoproporphyriaHCPCOPRO-oxidaseCPOXADHepatic✓ (blistering)
Variegate PorphyriaVPPROTO-oxidase (PPOX)PPOXADHepatic✓ (blistering)
Congenital ErythropoieticCEPURO-synthaseUROSARErythropoietic✓ (severe blistering)
Erythropoietic ProtoporphyriaEPPFerrochelatase (FECH)FECHARErythropoietic✓ (acute, NO blisters)
X-linked ProtoporphyriaXLPALAS2 (gain-of-function)ALAS2X-linkedErythropoietic✓ (acute, NO blisters)
Memory for acute porphyrias (no skin): "ALAD and AIP" = ALA dehydratase + PBG deaminase (early pathway; precursors don't form porphyrin rings → no photosensitivity)

Lab Patterns (Urine/Stool/RBC Accumulations)

PorphyriaUrine ALA/PBGUrine PorphyrinsStool PorphyrinsRBC
ADPALA↑Copro-IIINormalZn-protoporphyrin
AIPPBG > ALA ↑↑Uroporphyrin (from PBG)Normal/slightly ↑Not increased
PCTNormalUroporphyrin↑, 7-carboxylate↑Isocoproporphyrin↑Not increased
HCPPBG > ALA (during attack)Copro-IIICopro-III↑ (copro-III/I ratio ↑)Not increased
VPPBG > ALA (during attack)Copro-IIIProto IX + Copro-IIINot increased
CEPNormalUro-I, Copro-ICopro-IUro-I, Copro-I, ZPP
EPPNormalNormal± ProtoporphyrinMetal-free proto↑
Key distinguishing tests:
  • AIP: ↑↑ urine PBG (Watson-Schwartz test turns red) — most important
  • PCT: ↑ urine uroporphyrin + isocoproporphyrin in stool (pathognomonic)
  • VP: ↑ stool protoporphyrin IX + plasma fluorescence at 624–628 nm (distinguishes from AIP)
  • EPP: ↑ RBC free protoporphyrin (metal-free); NO urine changes

Individual Porphyrias — Detailed


1. Acute Intermittent Porphyria (AIP)

Most common acute porphyria; most important exam topic
Enzyme: HMB-synthase (hydroxymethylbilane synthase = PBG deaminase) Inheritance: AD, chromosome 11q23; ~50% enzyme activity Predominantly hepatic; NO skin involvement

Pathogenesis:

  • ALA synthase-1 (ALAS1) induced by triggers → ↑ flux through pathway
  • HMB synthase deficiency → ALA and PBG accumulate
  • ALA is neurotoxic (structural analog of GABA → neuronal damage)

Precipitants ("PABCD FASTING"):

  • Physical stress (infection, surgery)
  • Alcohol
  • Barbiturates, anticonvulsants (phenytoin, carbamazepine)
  • Carbamazepine, sulfonamides, rifampicin, griseofulvin, OCP
  • Diet — fasting/low carbohydrate (↑ ALAS1)
  • Hormones (progesterone — explains female predominance in reproductive age)

Clinical Features (Triad):

  1. Abdominal pain — most common; severe, colicky; no peritoneal signs
  2. Neuropsychiatric: anxiety, psychosis, depression, confusion, seizures
  3. Peripheral neuropathy: motor > sensory; ascending weakness → may → respiratory paralysis
Additional: Autonomic neuropathy (tachycardia, hypertension, constipation), hyponatremia (SIADH), dark/port-wine urine (ALA/PBG oxidize on standing)
Remember: AIP has NO photosensitivity (no porphyrin ring formed — ALA and PBG are precursors, not porphyrins)

Diagnosis:

  • Spot urine PBG (during attack) — elevated ↑↑ → most rapid and specific test
  • Watson-Schwartz test: urine PBG + Ehrlich reagent (p-dimethylaminobenzaldehyde) → red colour (PBG doesn't extract into butanol — distinguishes from urobilinogen)
  • ↑ ALA in urine
  • HMBS mutation analysis for family screening

Treatment:

Acute attack:
  1. Remove/avoid precipitants
  2. IV Hemin (heme arginate) — exogenous heme → feedback inhibits ALAS1 → ↓ ALA/PBG; mainstay of treatment
  3. IV Glucose (300–500 g/day) — carbohydrate loading → inhibits ALAS1 via PGC-1α
  4. Pain management (opioids safe); propranolol for tachycardia/hypertension
  5. Seizures → benzodiazepines (safe); avoid phenytoin
Prevention:
  • Avoid precipitants
  • Givosiran (Alnylam, 2019) — siRNA targeting ALAS1 mRNA in hepatocytes → ↓ ALAS1 → ↓ ALA/PBG; monthly SC injection; major advance for recurrent AIP

2. Porphyria Cutanea Tarda (PCT)

Most common porphyria overall (40 per million)
Enzyme: Uroporphyrinogen decarboxylase (UROD) Inheritance: Complex — Type I (80%): sporadic/acquired; Type II (20%): AD hereditary; Type III: familial

Pathogenesis:

  • UROD inhibited (not mutated in Type I) → uroporphyrins accumulate in liver → skin → react with UV light → reactive oxygen species → skin damage

Risk factors/triggers:

  • Alcohol (↑ iron + UROD inhibition)
  • Hepatitis C (most important association)
  • Iron overload (HFE mutations — C282Y common co-factor)
  • Estrogens (OCP, HRT)
  • HIV
  • Chlorinated hydrocarbons (industrial exposure)

Clinical Features:

  • Skin fragility and blistering on sun-exposed areas (dorsum of hands, face)
  • Milia (small white cysts) at sites of healed blisters
  • Hypertrichosis (excess facial hair — especially temples)
  • Hyperpigmentation (brownish)
  • No acute neurovisceral attacks
  • Liver disease (associated hepatitis C/cirrhosis)

Diagnosis:

  • ↑ Urine uroporphyrin (predominantly) and 7-carboxylate porphyrin
  • ↑ Stool isocoproporphyrin (pathognomonic for PCT)
  • Urine PBG/ALA: normal (distinguishes from acute porphyrias)
  • Skin biopsy: subepidermal blistering; DIF: IgG + C3 at DEJ

Treatment:

  1. Avoid triggers: Stop alcohol, iron supplementation, estrogens
  2. Phlebotomy (weekly; remove 450 mL blood) — depletes iron, most effective long-term
  3. Low-dose hydroxychloroquine/chloroquine — chelates uroporphyrin from liver; for those who can't tolerate phlebotomy
  4. Treat Hepatitis C (antiviral therapy → remission of PCT)
  5. Sun protection

3. Hereditary Coproporphyria (HCP)

Enzyme: Coproporphyrinogen oxidase (CPOX) Inheritance: AD; chromosome 3q12
Features: Both neurovisceral AND cutaneous (blistering skin)
  • Clinical picture similar to AIP but milder
  • Skin lesions (blistering) appear during/after attacks
  • Distinguishing lab: ↑ stool coproporphyrin III (copro-III/I ratio elevated)
  • Treatment: same as AIP (hemin + glucose)

4. Variegate Porphyria (VP)

Enzyme: Protoporphyrinogen oxidase (PPOX) Inheritance: AD; South African Afrikaner founder effect (1:300 prevalence in this population — all traced to a Dutch immigrant couple, 1680)
Features: Both neurovisceral AND cutaneous (blistering skin)
  • "Variegate" = variable — can present with neurovisceral, skin, or both
  • Distinguishing feature: Plasma fluorescence emission peak at 624–628 nm (specific for VP; AIP peaks at 615–622 nm)
  • ↑ Stool protoporphyrin IX + coproporphyrin III
  • Treatment: same as AIP; avoid precipitants

5. Congenital Erythropoietic Porphyria (CEP) — Günther's Disease

Enzyme: Uroporphyrinogen III synthase (UROS) Inheritance: AR (very rare)
Pathogenesis: Without UROS, HMB spontaneously cyclizes to type I isomers (Uro-I, Copro-I) which cannot be converted to heme → useless, photosensitizing accumulation

Clinical Features (severe, from infancy):

  • Pink/red urine in diapers (first sign — uroporphyrin I)
  • Severe photosensitivity: blistering, scarring, mutilation of face/hands
  • Fluorescent teeth (erythrodontia) — pinkish-red under UV (Woods lamp)
  • Hypertrichosis of face/extremities
  • Hemolytic anemia with splenomegaly
  • No neurovisceral attacks
Diagnosis: ↑ RBC uroporphyrin I; ↑ urine Uro-I + Copro-I; erythrodontia
Treatment: Sun avoidance (important!), blood transfusion (↓ erythropoiesis → ↓ porphyrin production), bone marrow transplant (only cure)

6. Erythropoietic Protoporphyria (EPP)

Enzyme: Ferrochelatase (FECH) Inheritance: AR (biallelic mutations; one allele + low-expression allele IVS3-48C)
Pathogenesis: Ferrochelatase deficiency → protoporphyrin IX cannot incorporate Fe²⁺ → metal-free protoporphyrin accumulates in RBCs, plasma, liver

Clinical Features:

  • Acute painful photosensitivity — burning, stinging, edema within minutes of sun exposure
  • No blisters (distinguishes from other cutaneous porphyrias — immediate/acute type)
  • Mild chronic skin changes over time
  • Liver disease (protoporphyrin is insoluble → cholestasis → biliary cirrhosis in ~5%)
  • Gallstones (protoporphyrin)
  • Mild hemolytic anemia
  • No neurovisceral attacks
Diagnosis: ↑ RBC free (metal-free) protoporphyrin — most important; ↑ stool protoporphyrin; urine normal
Treatment: Afamelanotide (Scenesse) — melanocyte-stimulating hormone analog → ↑ melanin → ↓ photosensitivity; beta-carotene (less effective); sun avoidance; cholestyramine (↓ enterohepatic recirculation of protoporphyrin); liver transplant if severe liver disease

7. ALA Dehydratase Deficiency Porphyria (ADP)

  • Rarest porphyria (< 10 cases worldwide)
  • ALAD deficiency (same enzyme inhibited by lead)
  • AR; severe neonatal/childhood onset
  • Neurovisceral only (↑ ALA, coproporphyrin III in urine)

Comparison: Acute vs Cutaneous — Key Exam Points

FeatureAcute (AIP, HCP, VP, ADP)Cutaneous Only (PCT, CEP, EPP)
PhotosensitivityNo (AIP, ADP) / Yes (HCP, VP)Yes
Urine PBG↑↑ (during attack)Normal
Urine ALANormal (except ADP)
Neurovisceral attacksYesNo
Main blistering porphyriasVP, HCP, CEP, PCT
Acute burning (no blisters)EPP, XLP

Precipitants of Acute Porphyria — Must Know

"CASE of PHISPS":
  • Carbohydrate low (fasting)
  • Alcohol
  • Stress (infection, surgery)
  • Estrogens/progestogens
  • Phenytoin, Phenobarbital
  • Halothane, hydantoins
  • Isoniazid
  • Sulfonamides
  • Progesterone (explains female preponderance)
  • Sexual hormones, rifampicin
Safe drugs in porphyria: Aspirin, paracetamol, morphine opioids, penicillin, propranolol, insulin, benzodiazepines (most)

Mnemonic: PORPHYRIA in AIP

LetterFeature
PPain (abdominal — severe, colicky)
OOutput (urine) — dark, port-wine coloured
RRising ALA/PBG in urine
PPsychiatric symptoms (psychosis, anxiety)
HHypertension + tachycardia (autonomic)
YYellow/red urine on standing
RRespiratory paralysis (severe cases)
IInappropriate ADH (SIADH → hyponatremia)
AAscending motor neuropathy

Quick Comparison Table — All 7 Porphyrias

ADPAIPPCTHCPVPCEPEPP
EnzymeALADHMBSURODCPOXPPOXUROSFECH
InheritanceARADComplexADADARAR
Neuro
SkinBlistersBlistersBlistersBlisters (severe)Burning (no blisters)
↑ Urine PBG✓✓✓ (attack)✓ (attack)
Key lab↑ ALA in urine↑ PBG urine↑ Uro urine + isocopro stool↑ Copro-III stool↑ Proto stool + plasma 626nm↑ Uro-I urine + erythrodontia↑ Free proto RBC
TreatmentHeminHemin + Glucose; GivosiranPhlebotomy + chloroquineHemin + glucoseHemin + glucoseBMTAfamelanotide

Watson-Schwartz Test

Principle: Urine + Ehrlich reagent (p-DMAB) → PBG gives pink/red precipitate
  • PBG (AIP) → Red colour, does NOT extract into butanol or chloroform
  • Urobilinogen → Red colour, DOES extract into butanol (moves to organic layer)
  • This extraction step differentiates AIP from normal urobilinogen

Sources: Harrison's Principles of Internal Medicine 22e — Chapter 428; Tietz Textbook of Laboratory Medicine 7e — Tables 41:4, 41:5; Goldman-Cecil Medicine; Thompson & Thompson Genetics 9e
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