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Thrombophilia — Comprehensive Detail
Definition & Core Concept
Thrombophilia is an abnormality of hemostasis — genetic, acquired, or combined — that predisposes to pathological thrombosis. No single factor guarantees clotting; rather, risks from genetic, acquired, and environmental sources are additive and sometimes multiplicative. A clinical thrombotic event typically requires an acquired trigger (surgery, pregnancy, immobilization) superimposed on a genetic predisposition.
"Similar to seizures, patients have a varying threshold for clotting."
(Tintinalli's Emergency Medicine)
Virchow's Triad — Pathophysiological Basis
All thrombotic states can be mapped to one or more of:
- Stasis — immobility, CHF, post-surgical, atrial fibrillation
- Endothelial injury — atherosclerosis, trauma, surgery, hyperhomocysteinemia
- Hypercoagulability — inherited or acquired thrombophilia
PART I — INHERITED (PRIMARY) THROMBOPHILIAS
Physiologic Anticoagulant Systems (What Goes Wrong)
Two major pathways regulate coagulation:
1. Antithrombin system — AT III inhibits thrombin, Factor Xa, and Factor IXa. Heparin accelerates this inhibition by:
- ~2,000–4,000× for thrombin
- ~500–1,000× for Factor Xa
- ~1,000,000× for Factor IXa
2. Protein C system — Protein C (vitamin K–dependent) is activated by thrombin on the endothelial surface → cleaves and inactivates FVa and FVIIIa. Protein S is its cofactor, amplifying inhibitory effect ~20-fold.
A. ANTITHROMBIN III DEFICIENCY
| Feature | Detail |
|---|
| Prevalence | 1 in 10,000 general population; ~1% of familial VTE |
| Inheritance | Autosomal dominant, high penetrance |
| Heterozygote AT levels | 40–60% of normal → full clinical manifestations |
| VTE risk | 5–50× increased — highest risk of all inherited thrombophilias |
Types
| Type | AT Activity | AT Antigen | Notes |
|---|
| Type I | ↓ | ↓ (proportionate) | Quantitative deficiency; frameshift/nonsense mutations |
| Type II RS | ↓ | Normal | Reactive site defect — mutations near thrombin binding site |
| Type II HBS | ↓ | Normal | Heparin binding site defect → heparin resistance; low thrombotic risk as heterozygote |
| Type II PE | ↓ | Normal | Pleiotropic effect — affects both sites |
Key Clinical Points
- Homozygous AT III deficiency is incompatible with life (intrauterine thrombosis) — except Type II HBS heterozygotes who survive
- Most common presentation: DVT lower extremity + PE; also retinal, mesenteric, splenic vein thrombosis
- Heparin resistance — heparin works through AT III; if AT III is absent/low, heparin cannot exert full anticoagulant effect → escalating heparin doses required → use AT III concentrate (recombinant or plasma-derived) as adjunct
- Acquired AT III deficiency: DIC, liver disease, nephrotic syndrome (urinary loss), post-thrombosis, asparaginase chemotherapy, heparin therapy (↓ up to 20%)
- Newborns have physiologically low AT III levels — reaches adult levels by 6 months
Diagnosis
- Functional (chromogenic) assay — preferred; detects all types including Type II
- Antigen assay (ELISA/nephelometry) — to distinguish Type I from Type II
- Never rely on antigen alone — Type II has normal antigen but low function
Treatment
- Acute VTE: standard anticoagulation; if heparin-resistant → AT III concentrate IV
- Long-term: DOACs or warfarin; indefinite anticoagulation after first unprovoked VTE recommended given very high recurrence risk
B. PROTEIN C DEFICIENCY
| Feature | Detail |
|---|
| Prevalence | 1 in 200–500; found in 2–5% of VTE patients |
| Inheritance | Autosomal dominant |
| Function | Inactivates FVa and FVIIIa after activation by thrombin on endothelium |
| VTE risk | 3–15× increased |
Types
| Type | PC Activity | PC Antigen |
|---|
| Type I | ↓ | ↓ (proportionate) — quantitative deficiency |
| Type II | ↓ | Normal — qualitative/functional defect |
Key Clinical Points
- Neonatal purpura fulminans — homozygous or doubly heterozygous Protein C deficiency → widespread, potentially fatal thrombosis in newborns; a hematological emergency requiring Protein C concentrate
- Warfarin-induced skin necrosis (WISN) — the highest-risk thrombophilia for this complication:
- Warfarin inhibits vitamin K–dependent proteins. Protein C has shortest half-life (~6–8 hours) → drops first, before procoagulant factors (II, VII, IX, X)
- Creates a transient prothrombotic window of ~3–5 days after starting warfarin
- Dermal venous thrombosis → painful skin necrosis, typically over fat-rich areas (breast, buttocks, thighs, abdomen)
- Prevention: Always overlap with heparin (UFH or LMWH) for ≥5 days when initiating warfarin; avoid large loading doses
- Management if occurs: Switch to heparin acutely; rivaroxaban shown safe as long-term alternative; Protein C concentrate if available
- Acquired Protein C deficiency: liver disease, DIC, vitamin K deficiency, post-op, neonatal period
Diagnosis
- Functional assay preferred (chromogenic or clot-based)
- Antigen assay to distinguish Type I from Type II
- Cannot test reliably during: acute thrombosis, warfarin therapy, vitamin K deficiency (all reduce Protein C)
C. PROTEIN S DEFICIENCY
| Feature | Detail |
|---|
| Prevalence | ~1 in 500; found in 1–3% of VTE patients |
| Inheritance | Autosomal dominant |
| Function | Cofactor for activated Protein C; amplifies FVa/FVIIIa inactivation ~20× |
| VTE risk | 5–10× increased (but only markedly elevated when levels are far below normal range) |
Types
| Type | Free Protein S | Total Protein S | PC Activity Supported |
|---|
| Type I | ↓ | ↓ | ↓ |
| Type II | Normal | Normal | ↓ (functional defect) |
| Type III | ↓ | Normal | ↓ (↓ free fraction) |
Key Clinical Points
- In plasma, ~60% of Protein S is bound to C4b-binding protein (inactive); only the free form (~40%) is functionally active as Protein C cofactor
- Protein S deficiency mimics Protein C deficiency clinically — same sites of thrombosis
- Also associated with WISN (mechanism same as Protein C deficiency)
- Neonatal purpura fulminans in homozygous deficiency
- Acquired: liver disease, pregnancy, OCP/estrogen use (↑ C4b-binding protein → ↓ free fraction), Vitamin K deficiency, DIC
Diagnosis
- Free Protein S antigen — most important; reflects functionally available fraction
- Total Protein S antigen + functional assay to classify Type I/II/III
- Cannot test during: estrogen/OCP use, pregnancy, warfarin therapy, acute thrombosis
D. FACTOR V LEIDEN (FVL) — Most Common Inherited Thrombophilia
| Feature | Detail |
|---|
| Mutation | c.1691G>A, exon 10 of FV gene → Arg506Gln |
| Mechanism | APC cannot cleave FVa at Arg506 → FVa persists 10× longer → excess thrombin |
| Prevalence | 3–5% White/Northern European; absent in African & Asian populations |
| Inheritance | Autosomal dominant |
| Zygosity | VTE Relative Risk | Mean onset |
|---|
| Heterozygous | 5–10× | 44 years |
| Homozygous | 50–100× | 31 years |
Combined Risk (Multiplicative Effects)
| Combination | Combined Fold Risk |
|---|
| FVL (het) + Protein C deficiency | 25–45× |
| FVL (het) + Protein S deficiency | 25–50× |
| FVL (het) + elevated Factor VIII | 12–20× |
| FVL (het) + OCP | 8–20× |
| FVL (het) + Pregnancy | 25–40× |
(Henry's Clinical Diagnosis, Laboratory Methods)
Key Points
- Does NOT increase arterial thrombosis risk
- Found in 25% of idiopathic VTE, 30–50% of recurrent VTE, 20–60% of OCP-associated VTE, 8–30% of recurrent pregnancy loss
Diagnosis
- APCR phenotypic assay: ratio = APTT with APC ÷ APTT without APC; low ratio = resistance
- Modified assay (1:5 dilution in FV-depleted plasma) is more specific for FVL
- DOACs can falsely elevate APC ratio
- Molecular (PCR) testing for c.1691G>A — definitive; unaffected by anticoagulation; required to distinguish heterozygous from homozygous; critical for genetic counseling
E. PROTHROMBIN G20210A MUTATION
| Feature | Detail |
|---|
| Mutation | G→A at nucleotide 20210 of F2 (prothrombin) gene — 3'-UTR |
| Mechanism | Gain-of-function → ~30% increase in circulating prothrombin → excess thrombin generation |
| Prevalence | 1–6% White/European; rare in other populations |
| Inheritance | Autosomal dominant |
| VTE risk | 2–3× increased (heterozygous); higher with homozygosity |
| Frequency in VTE patients | 3–8% of all VTE; ~10% of first-episode DVT |
Key Points
- Similar clinical phenotype to FVL — predominantly venous thrombosis
- Also associated with pregnancy complications (pre-eclampsia, fetal loss, IUGR)
- Combined FVL + prothrombin mutation = very high VTE risk
- Diagnosis: PCR for G20210A — lab tests of coagulation (PT/aPTT) may be normal; prothrombin activity/antigen elevated
F. FACTOR II (PROTHROMBIN) DEFICIENCY — Hemorrhagic Disorder, NOT Thrombophilia
This is distinct from the Prothrombin G20210A gain-of-function mutation above. Factor II (prothrombin) deficiency is a bleeding disorder, not a thrombophilic state.
| Feature | Detail |
|---|
| Prevalence | ~1 in 2,000,000 — rarest inherited coagulation deficiency |
| Complete deficiency | Incompatible with life (animal models confirm perinatal lethality) |
| Inheritance | Autosomal recessive |
Types
| Type | FII Activity | FII Antigen | Clinical |
|---|
| Type I — Hypoprothrombinemia | ↓ | ↓ (proportionate) | Mucosal bleeding, hematomas, hemarthrosis |
| Type II — Dysprothrombinemia | ↓ | Normal (dysfunctional protein) | Less predictable — may be asymptomatic or have mild bleeding only |
Clinical Features
- Bleeding symptoms: mucosal bleeding (epistaxis, gum bleeding, menorrhagia), easy bruising, hematomas, hemarthrosis (joint bleeding)
- Severity correlates with residual FII activity level
- Dysprothrombinemia (Type II) is clinically milder and unpredictable
Lab Pattern
| Test | Result |
|---|
| PT | Prolonged |
| aPTT | Prolonged |
| Thrombin time | Normal (fibrinogen is normal) |
| Specific FII assay | Low activity (confirms) |
- Both PT and aPTT are prolonged because FII is in the common pathway (shared by intrinsic and extrinsic pathways)
- Compare: Factor VII deficiency → prolonged PT only (extrinsic); Factor VIII/IX deficiency → prolonged aPTT only (intrinsic)
Acquired Factor II Deficiency (More Common)
- Warfarin / Vitamin K deficiency — FII is vitamin K–dependent; drops with warfarin (half-life 3 days — slowest of all vitamin K–dependent factors)
- Liver disease — reduced hepatic synthesis
- DIC — consumption
- Antiphospholipid syndrome with lupus anticoagulant (LA) — rare acquired autoantibody can target prothrombin → lupus anticoagulant-hypoprothrombinemia syndrome (LAHPS) — causes bleeding despite a lupus anticoagulant (which usually causes thrombosis)
Treatment of FII Deficiency
| Option | Notes |
|---|
| Prothrombin Complex Concentrate (PCC) | Treatment of choice; contains FII, VII, IX, X |
| Fresh Frozen Plasma (FFP) | Alternative when PCC unavailable; larger volumes needed |
| Recombinant FII | Not currently available |
| Vitamin K | Effective only if cause is warfarin or dietary vitamin K deficiency |
PART II — ACQUIRED (SECONDARY) THROMBOPHILIAS
Antiphospholipid Syndrome (APS) — Full Detail
| Feature | Detail |
|---|
| Antibodies | Lupus anticoagulant (LA), anti-cardiolipin IgG/IgM, anti-β2 glycoprotein I IgG/IgM |
| Unique feature | Only thrombophilia causing both arterial AND venous thrombosis |
| Triple positive | LA + 2 positive IgG antiphospholipid antibodies = highest risk |
| Obstetric APS | Recurrent pregnancy loss, pre-eclampsia, IUGR, placental insufficiency |
Catastrophic APS (CAPS)
- Rapid multiorgan thrombosis (<1 week), high mortality
- Treat with anticoagulation + steroids + IVIG/plasmapheresis
Lab Paradox
- Lupus anticoagulant prolongs aPTT in vitro (phospholipid-dependent test) but causes thrombosis in vivo
- Cannot test lupus anticoagulant on DOACs — falsely positive results
Treatment
- Warfarin preferred over DOACs for APS (especially triple-positive) — target INR 2.0–3.0
- DOACs have shown higher recurrence rates in APS (TRAPS trial with rivaroxaban)
Full Table of Acquired Thrombophilias (Secondary Hypercoagulable States)
| Condition | Mechanism |
|---|
| Surgery / trauma / immobility | Stasis + endothelial injury + coagulation activation |
| Pregnancy + puerperium | ↑ procoagulant factors, ↓ Protein S, ↓ fibrinolysis, stasis |
| OCP / HRT / tamoxifen | Estrogen → ↑ FVII, FVIII, FX, fibrinogen; ↓ Protein S, AT III |
| Malignancy (Trousseau) | Tumor-derived tissue factor, mucin activates platelets/coagulation |
| Myeloproliferative neoplasms (PV, ET) | JAK2 V617F → sticky activated platelets, especially splanchnic veins |
| Paroxysmal nocturnal hemoglobinuria (PNH) | Complement-activated platelets; especially hepatic vein thrombosis |
| Nephrotic syndrome | Urinary loss of AT III, Protein C, Protein S |
| Hyperhomocysteinemia | Endothelial injury, ↑ oxidative stress; arterial + venous thrombosis |
| Heparin-induced thrombocytopenia (HIT) | PF4-heparin antibodies → platelet activation → paradoxical thrombosis |
| Antiphospholipid syndrome | Antibody-mediated activation of endothelium and coagulation |
| HIV | Endothelial inflammation, acquired Protein S deficiency |
| DIC | Paradoxically thrombotic AND hemorrhagic |
| Non-O blood group | vWF cleared more slowly → higher vWF levels → ↑ FVIII → VTE risk |
Thrombophilia Testing — Complete Framework
When to Suspect (Features)
- Age ≤45 at first VTE
- Recurrent VTE
- Family history of thrombosis (first-degree relatives)
- Unprovoked (no clear provoking factor)
- Unusual site: hepatic, portal, mesenteric, splenic, cerebral venous sinus
- Recurrent pregnancy loss / adverse obstetric outcomes
- Neonatal purpura fulminans
- Warfarin-induced skin necrosis
Testing Algorithm
When NOT to Test
- During acute thrombosis (consumes AT III, Protein C, Protein S — false deficiency)
- On warfarin (lowers Protein C, Protein S)
- On heparin (lowers AT III activity)
- On DOACs (interferes with LA testing, APCR ratio)
- Arterial thrombosis alone (primary thrombophilias rarely causative)
Optimal Timing
3–6 months after the event, off anticoagulation, in a clinically stable patient.
Treatment — Comprehensive
Acute VTE
- DOACs first-line (rivaroxaban, apixaban, edoxaban, dabigatran) — at least as effective as warfarin, fewer bleeds
- Exceptions where warfarin preferred: APS (especially triple-positive), prosthetic heart valves, mechanical heart valves
- Bridge with UFH/LMWH for ≥5 days if starting warfarin in Protein C or S deficiency
Duration of Anticoagulation
| Scenario | Duration |
|---|
| Provoked VTE (major transient: surgery, trauma) | 3–6 months |
| Provoked VTE (minor transient: OCP, travel) | 3–6 months, consider longer |
| First unprovoked VTE — low-risk thrombophilia (het FVL, het PT G20210A) | 6–12 months minimum; weigh bleeding vs recurrence |
| First unprovoked VTE — high-risk thrombophilia (AT III, Protein C/S deficiency, homo FVL, APS) | Indefinite anticoagulation |
| Recurrent VTE (≥2 events) | Indefinite, regardless of thrombophilia status |
Asymptomatic Relatives
- Do NOT anticoagulate prophylactically in absence of VTE history
- Counsel about: avoiding OCP/HRT, prophylaxis before surgery/pregnancy, signs of DVT/PE
- Test before planned hormone therapy or pregnancy if family member has high-risk thrombophilia
Pregnancy in Thrombophilia
- LMWH — anticoagulant of choice throughout pregnancy
- Warfarin: crosses placenta → fetal warfarin syndrome (teratogenic in 1st trimester), fetal bleeding
- DOACs: safety in pregnancy not established — avoid
- Thromboprophylaxis throughout pregnancy + 6 weeks postpartum (highest risk period)
(Goldman-Cecil Medicine)
Risk Summary — All Thrombophilias
| Disorder | Type | VTE Relative Risk | Prevalence (general pop) |
|---|
| Antithrombin III deficiency | Inherited | 5–50× | 1 in 10,000 |
| Protein C deficiency | Inherited | 3–15× | 1 in 200–500 |
| Protein S deficiency | Inherited | 5–10× | 1 in 500 |
| Factor V Leiden (het) | Inherited | 5–10× | 3–5% (White) |
| Factor V Leiden (hom) | Inherited | 50–100× | Rare |
| Prothrombin G20210A (het) | Inherited | 2–3× | 1–6% (White) |
| FVL + PT G20210A (combined) | Inherited | Very high | Uncommon |
| Antiphospholipid syndrome | Acquired | 5–10× (art+ven) | 1–5% |
| Factor II deficiency | Inherited | — (bleeding disorder) | 1 in 2,000,000 |
| Hyperhomocysteinemia | Acquired/genetic | 2–3× | Variable |