Phase-encoding direction in MRI is one of the in-plane spatial directions used to locate signal. A short gradient is applied before signal readout, causing spins at different positions to accumulate different phase shifts. Repeating the sequence with different phase-gradient strengths fills the phase-encoding dimension of k-space.
It is perpendicular to the frequency-encoding (readout) direction.
Why it matters clinically
Most motion-related artifacts occur along the phase-encoding direction:
- Respiratory, cardiac, swallowing, and vascular pulsation produce repeated ghost images in this direction.
- Wrap-around (aliasing) usually occurs in the phase direction if anatomy outside the field of view is included.
- MRI technologists select this direction to move ghosts and wrap-around away from the structure being assessed.
For example, in a brain MRI, phase direction may be set anterior-posterior or right-left so pulsation ghosts from vessels or CSF do not obscure the brainstem or pituitary. In thoracic imaging, it may be chosen to prevent cardiac or respiratory ghosts from crossing a lesion.
Practical rule
Choose the phase-encoding direction:
- Along the shorter body dimension when possible, to reduce wrap-around.
- So expected motion/flow ghosts project away from the region of interest.
- With awareness that more phase-encoding steps improve resolution but increase scan time.
Phase encoding is typically slower than frequency encoding because separate repetitions are required for each phase-encoding step. The textbook notes that increasing resolution in the phase-encoding axis increases acquisition time. Bradley and Daroff's Neurology in Clinical Practice, Magnetic Resonance Image Reconstruction, lines 43-46.
For a clear artifact-focused explanation,
MRIQuestions on PE direction describes how phase direction is selected to control motion and wrap-around artifacts.