Section 6 from Harrisons diseases caused by gram-negative bacteria, 160 Minco fax 161, 162, 163, due to hack a group and miscellaneous grammar, 164 infections, 165, Police boat infection 166 by Ramana enter by 167 infections, 168 Gopi infection, 160 fixtures diseases due to camp and related organisms, 117 infections due to sudaul areas species 171 Salmon 172 losses 173 brewis 174% losses, 175 to 176 and other eight senior infections, 177 infections and including cats disease, 178, Vanoss teach me everything I need to know from these topics in Harrison 22nd edition, so I can learn 

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Section 6 from Harrisons diseases caused by gram-negative bacteria, 160 Minco fax 161, 162, 163, due to hack a group and miscellaneous grammar, 164 infections, 165, Police boat infection 166 by Ramana enter by 167 infections, 168 Gopi infection, 160 fixtures diseases due to camp and related organisms, 117 infections due to sudaul areas species 171 Salmon 172 losses 173 brewis 174% losses, 175 to 176 and other eight senior infections, 177 infections and including cats disease, 178, Vanoss teach me everything I need to know from these topics in Harrison 22nd edition, so I can learn  in detail 

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Here is your complete, detailed study guide for Section 6 of Harrison's 22nd Edition - Diseases Caused by Gram-Negative Bacteria, drawn directly from the textbook (pages ~1285-1385).

HARRISON'S 22E - SECTION 6: DISEASES CAUSED BY GRAM-NEGATIVE BACTERIA

Complete Study Guide


CHAPTER 160 - MENINGOCOCCAL INFECTIONS

(Neisseria meningitidis)

Organism

  • Gram-negative aerobic diplococcus, humans are the only host
  • Catalase- and oxidase-positive; utilizes glucose and maltose (key: does NOT use lactose, unlike gonococci which uses only glucose)
  • Capsule determines serogroup - 12 serogroups total; A, B, C, X, Y, W cause most invasive disease
  • Group B capsule = α-2,8-N-acetylneuraminic acid (mimics human neural tissue - poor immunogen)
  • Group A = major cause of epidemic disease in sub-Saharan Africa (Meningitis Belt)
  • Group W = outbreaks at mass gatherings (Hajj pilgrimage)

Epidemiology

  • Colonizes nasopharynx asymptomatically in 5-10% of healthy adults (up to 25% in outbreaks)
  • Invasive disease rate: ~0.3-3 per 100,000; highest in infants, adolescents, young adults
  • Spread by respiratory droplets and direct contact
  • Risk factors: complement deficiencies (especially terminal complement C5-C9), asplenia, properdin deficiency, crowded living (military recruits, college dorms), active/passive smoking
  • Adolescents/young adults: important reservoir and vaccine target group

Pathogenesis

  • Colonization → nasopharyngeal attachment via pili → mucosal invasion → bacteremia → seeding meninges
  • Lipooligosaccharide (LOS) = major virulence factor; triggers cytokine storm
  • Factor H binding protein allows immune evasion
  • Meningococcemia: bacteria replicate in blood, LOS triggers TNF-α, IL-1, IL-6 → DIC, capillary leak → septic shock

Clinical Manifestations

1. Meningococcal Meningitis

  • Most common presentation of invasive disease
  • Fever, headache, neck stiffness, photophobia, vomiting
  • Kernig's and Brudzinski's signs
  • Petechial/purpuric rash in 50-80% (pathognomonic when present)

2. Meningococcemia (Septicemia)

  • Fever, rigors, myalgia, malaise
  • Petechial rash - initially blanching; progresses to non-blanching purpura (purpura fulminans)
  • Rapidly evolving to hypotension, DIC, multiorgan failure
  • Waterhouse-Friderichsen syndrome = bilateral adrenal hemorrhage → adrenal insufficiency

3. Other Presentations

  • Occult bacteremia (especially young children)
  • Pneumonia (serogroup Y associated)
  • Septic arthritis
  • Conjunctivitis
  • Chronic meningococcemia (rare) - intermittent fever, rash, arthritis for weeks

Diagnosis

  • Blood cultures (positive in ~75% of untreated cases)
  • CSF - turbid, elevated WBC (neutrophils), elevated protein, low glucose; Gram stain shows gram-negative diplococci; culture; PCR
  • Do NOT delay antibiotics for LP if raised ICP suspected
  • Serum meningococcal PCR useful even after antibiotics started

Treatment

  • Immediate IV penicillin G or ceftriaxone (third-generation cephalosporins are first-line)
  • Adults: ceftriaxone 2g IV q12h
  • Duration: 7 days for uncomplicated meningococcal meningitis
  • Supportive: IV fluids, vasopressors for shock, FFP/platelets for DIC
  • Dexamethasone 0.15 mg/kg q6h x4 days (reduces hearing loss and neurologic sequelae in meningitis)
  • Rifampicin for close contacts (chemoprophylaxis): 600mg BD x2 days; alternatives = ciprofloxacin single dose or ceftriaxone single IM dose

Vaccines

  • MenACWY conjugate vaccines - for all adolescents (US: 11-12 years, booster at 16)
  • MenB vaccines (Bexsero, Trumenba) - for high-risk groups (complement deficiency, asplenia, outbreaks)
  • MenACWY required for Hajj pilgrims
  • MenAfriVac (Group A conjugate) - dramatically reduced Group A disease in the Meningitis Belt

CHAPTER 161 - HAEMOPHILUS AND MORAXELLA INFECTIONS

Haemophilus influenzae

Organism

  • Gram-negative coccobacillus; requires factor X (hemin) and factor V (NAD) for growth
  • Grows on chocolate agar (heated blood agar releases both factors)
  • 6 capsular types (a-f); type b (Hib) = most virulent
  • Nontypeable H. influenzae (NTHi) = no capsule = major cause of mucosal infections

Diseases

Hib (typeable)Nontypeable (NTHi)
Meningitis (children <5, pre-vaccine era)Otitis media (most common cause in children)
Epiglottitis ("cherry red epiglottis")Sinusitis
PneumoniaPneumonia in adults with COPD
Septic arthritisNeonatal sepsis/meningitis
Cellulitis

Diagnosis

  • Gram-negative coccobacilli in CSF = strong evidence for Hib meningitis
  • Blood cultures, CSF culture, PCR
  • NTHi: gram-negative coccobacilli predominating with PMNs in sputum Gram stain

Treatment

  • Hib meningitis: ceftriaxone (75-100 mg/kg/day in 2 doses) or cefotaxime
  • Adults: ceftriaxone 2g q12h or cefotaxime 2g q4-6h
  • Add dexamethasone (0.6 mg/kg/day in 4 doses x2 days) for children >2 months with Hib meningitis
  • Epiglottitis: airway management is CRITICAL + ceftriaxone 50 mg/kg/day
  • Rifampicin chemoprophylaxis for household contacts

Vaccine

  • Hib conjugate vaccine = dramatic reduction in Hib invasive disease (routine childhood immunization)
  • Does NOT protect against NTHi

Haemophilus ducreyi

  • Causes chancroid - painful genital ulcer with painful inguinal lymphadenopathy (bubo)
  • Soft, undermined edges (vs hard, painless chancre of syphilis)
  • STI, common in developing countries, co-factor for HIV transmission
  • Treatment: azithromycin 1g single dose, or ceftriaxone 250mg single IM dose, or ciprofloxacin

Moraxella catarrhalis

  • Gram-negative diplococcus (resembles Neisseria)
  • Causes otitis media in children, sinusitis, exacerbations of COPD (pneumonia in elderly)
  • Nearly all strains are beta-lactamase positive - resistant to ampicillin
  • Treatment: amoxicillin-clavulanate, second/third-gen cephalosporins, or trimethoprim-sulfamethoxazole

CHAPTER 162/163 - HACEK GROUP AND OTHER FASTIDIOUS GRAM-NEGATIVES

HACEK Organisms

Haemophilus, Aggregibacter (formerly Actinobacillus), Cardiobacterium, Eikenella corrodens, Kingella
  • Fastidious gram-negatives, part of normal oral/upper respiratory flora
  • Classically associated with subacute bacterial endocarditis (SBE) - especially in patients with structural heart disease or poor dental hygiene
  • Blood cultures may require prolonged incubation (now usually detected by standard BACTEC systems within 5 days)
  • Treatment: ceftriaxone 2g/day x4 weeks (preferred); ampicillin-sulbactam is an alternative

Individual HACEK Members

  • Aggregibacter aphrophilus: periodontitis, endocarditis, brain abscess
  • Cardiobacterium hominis: endocarditis (mostly aortic/mitral valves)
  • Eikenella corrodens: human bite wounds, periodontal abscess, neck infections, endocarditis - resistant to clindamycin and metronidazole
  • Kingella kingae: children <4 years - septic arthritis, osteomyelitis, bacteremia; occupies respiratory tract

Other Miscellaneous Gram-Negatives

  • Capnocytophaga canimorsus: dog and cat bites → severe sepsis (especially in asplenic patients), DIC, gangrene; treatment: penicillin or amoxicillin-clavulanate
  • Chromobacterium violaceum: freshwater/soil → skin/soft tissue infections; produces violet pigment; treatment: fluoroquinolones or carbapenems
  • Pasteurella multocida: animal bites (especially cats > dogs) → rapidly progressing cellulitis; treatment: amoxicillin-clavulanate

CHAPTER 165 - PERTUSSIS AND OTHER BORDETELLA INFECTIONS

Organism

  • Gram-negative pleomorphic aerobic bacillus
  • B. pertussis - humans only; B. parapertussis - milder illness; B. bronchiseptica - animals (kennel cough in dogs)
  • Slow-growing, fastidious; grows on Bordet-Gengou agar (selective)
  • Key virulence factor: pertussis toxin (PT) - ADP-ribosylates G proteins; also filamentous hemagglutinin (FHA), adenylate cyclase toxin

Clinical Stages

  1. Catarrhal stage (1-2 weeks): rhinorrhea, mild cough, low fever - most infectious stage
  2. Paroxysmal stage (2-6 weeks): paroxysmal coughing bursts followed by inspiratory whoop; post-tussive vomiting; apnea in infants; leukocytosis (lymphocytosis)
  3. Convalescent stage (weeks to months): gradual improvement - the "100-day cough"

Diagnosis

  • Nasopharyngeal PCR = most sensitive (gold standard now)
  • Culture on Bordet-Gengou agar - takes 5-7 days, lower sensitivity
  • Serology (anti-PT IgG) useful >3 weeks into illness
  • Lymphocytosis on CBC (counts can exceed 50,000-100,000/μL in infants)

Treatment

  • Macrolides are first-line (reduce duration and transmission if given early)
    • Azithromycin 10mg/kg/day x5 days (preferred for infants and children)
    • Clarithromycin or erythromycin alternatives
  • TMP-SMX if macrolide intolerant
  • Antibiotics in paroxysmal stage: do NOT shorten illness but prevent spread

Vaccine

  • DTaP (diphtheria, tetanus, acellular pertussis) - routine childhood series
  • Tdap booster for adolescents and adults; every pregnancy (3rd trimester)
  • Acellular vaccine replaced whole-cell vaccine (lower side effects; immunity wanes faster)

CHAPTER 168 - HELICOBACTER PYLORI INFECTIONS

Organism

  • Gram-negative spiral bacillus; flagellated (motile in gastric mucus)
  • Microaerophilic; produces abundant urease (key virulence factor - neutralizes stomach acid)
  • Lives in gastric mucus layer; mucosal (not systemic) distribution

Epidemiology

  • Colonizes ~40% of world's population; essentially lifelong unless eradicated
  • Prevalence: <30% in US/Europe/Oceania vs >60% in Africa, South America, West Asia
  • US: ~18% adults, ~14% children; prevalence declining with socioeconomic development
  • Transmission: human-to-human; fecal-oral or oral-oral route (especially child-to-child in developing countries)
  • Risk factors: childhood crowding, poor sanitation, low socioeconomic status

Pathogenesis

  • CagA-positive strains (cytotoxin-associated gene A): more virulent; associated with peptic ulcer and gastric cancer
  • VacA (vacuolating cytotoxin A): disrupts epithelial cells
  • Urease → ammonia → neutralizes acid → allows survival → mucosal injury
  • Chronic inflammation → atrophic gastritis → intestinal metaplasia → dysplasia → gastric adenocarcinoma
  • Type I antrum-predominant gastritis → duodenal ulcer (increased acid)
  • Type II corpus-predominant gastritis → gastric ulcer and gastric cancer (decreased acid)

Associated Diseases

  1. Peptic ulcer disease (most common): ~95% of duodenal ulcers, ~70-80% of gastric ulcers
  2. Gastric adenocarcinoma - H. pylori is WHO Group 1 carcinogen
  3. Gastric MALT lymphoma - eradication achieves remission in low-grade MALT lymphoma
  4. Possible protection against GERD and esophageal adenocarcinoma (controversial)
  5. Possible extra-gastric associations (ITP, iron deficiency anemia, ischemic heart disease - less established)

Diagnosis

  • Non-invasive (no endoscopy needed):
    • Urea breath test (UBT): gold standard non-invasive test; uses 13C or 14C-labelled urea; H. pylori urease cleaves it → labelled CO2 exhaled
    • Stool antigen test: similar accuracy to UBT; useful for diagnosis and test-of-cure
    • Serology (IgG antibody): useful for epidemiology; cannot confirm eradication (antibody persists)
  • Invasive (endoscopy-based):
    • Rapid urease test (CLO test) on biopsy - quick, cheap
    • Histology (Giemsa or Warthin-Starry silver stain)
    • Culture (for antibiotic sensitivity testing)
  • Important: Stop PPIs 2 weeks before testing, antibiotics 4 weeks before - to avoid false negatives on UBT/stool antigen/urease tests

Treatment - Eradication Regimens

  • First-line (where clarithromycin resistance <15%): Triple therapy x14 days:
    • PPI + clarithromycin + amoxicillin (or metronidazole if penicillin allergy)
  • Bismuth quadruple therapy (where resistance higher or first-line fails):
    • PPI + bismuth subsalicylate + metronidazole + tetracycline x10-14 days
  • Concomitant therapy: PPI + clarithromycin + amoxicillin + metronidazole x14 days
  • Test of cure: UBT or stool antigen at ≥4 weeks after completing therapy
  • Eradication of H. pylori permanently cures peptic ulcer disease in most cases

CHAPTER 169 - CAMPYLOBACTER AND RELATED ORGANISMS

Key Organisms

  • Campylobacter jejuni = most common cause of bacterial gastroenteritis in developed world
  • Also: C. coli, C. fetus (systemic disease in immunocompromised), Arcobacter, Helicobacter (non-pylori)

Organism

  • Gram-negative curved/spiral motile bacilli; microaerophilic
  • Darting "corkscrew" motility on darkfield microscopy
  • Reservoir: poultry (major), cattle, unpasteurized milk, pets
  • Transmission: undercooked poultry (most common in developed countries), contaminated water, unpasteurized milk, contact with infected animals

Clinical Manifestations - C. jejuni

  • Enteritis: watery or bloody diarrhea (dysentery-like), fever, cramping abdominal pain
  • Incubation 1-7 days; self-limiting in 5-7 days in immunocompetent
  • Complications: reactive arthritis, Guillain-Barré syndrome (GBS) - C. jejuni most common identifiable trigger of GBS (molecular mimicry between LOS and gangliosides GM1/GD1a)
  • Bacteremia rare in immunocompetent; more common with C. fetus

Diagnosis

  • Stool culture on selective media (Skirrow's or CCDA agar) at 42°C, microaerophilic conditions
  • PCR becoming standard

Treatment

  • Most cases: self-limiting, supportive care (oral rehydration)
  • Antibiotics (azithromycin or fluoroquinolone) for severe disease, dysentery, immunocompromised, or prolonged illness
  • Note: increasing fluoroquinolone resistance (especially in Asian strains)
  • C. fetus bacteremia: ampicillin or imipenem + aminoglycoside

CHAPTER 170 - PSEUDOMONAS AERUGINOSA AND OTHER PSEUDOMONAS INFECTIONS

Organism

  • Gram-negative aerobic rod; non-fermenter
  • Produces blue-green pigment (pyocyanin + pyoverdin) → blue-green pus
  • Sweet, grape-like/corn tortilla odor
  • Oxidase-positive; grows on most media including minimal nutrient agar
  • Ubiquitous in moist environments (water, soil, plants, hospital equipment)

Virulence Factors

  • Exotoxin A (inhibits EF-2 - protein synthesis like diphtheria toxin)
  • Alginate capsule (mucoid strains in CF patients - biofilm formation)
  • Exoenzymes S, T, U, Y (type III secretion system)
  • Elastases, proteases, phospholipase C

Who Gets Pseudomonas Infections?

  • Cystic fibrosis patients - chronic airway colonization/infection (mucoid strains)
  • Burn patients
  • Neutropenic/immunocompromised patients (bacteremia, pneumonia)
  • ICU patients on mechanical ventilation (VAP)
  • Diabetics (malignant otitis externa, osteomyelitis of foot)
  • Hot tub/swimming pool users (folliculitis, otitis externa)
  • Contact lens wearers (corneal ulcers/keratitis - vision-threatening)
  • IV drug users (endocarditis)

Key Clinical Syndromes

  • Ecthyma gangrenosum: pathognomonic skin lesion - begins as erythematous papule → black necrotic ulcer with surrounding erythema; occurs in bacteremia in neutropenic patients
  • Malignant (necrotizing) otitis externa: diabetics/elderly; severe, progressive; involves temporal bone; treat with ciprofloxacin (IV or oral)
  • Pneumonia: in mechanically ventilated and CF patients; carries high mortality
  • Bacteremia: in neutropenic patients - high mortality; "septicemic" presentation

Treatment

  • Always use combination therapy for serious infections (anti-pseudomonal beta-lactam + aminoglycoside or fluoroquinolone)
  • Anti-pseudomonal beta-lactams: piperacillin-tazobactam, ceftazidime, cefepime, imipenem, meropenem
  • Aminoglycosides: tobramycin, amikacin
  • Fluoroquinolones: ciprofloxacin (most active quinolone against Pseudomonas)
  • Colistin/polymyxin B for MDR/XDR strains
  • CF chronic management: inhaled tobramycin, azithromycin (immunomodulatory)

CHAPTER 171 - SALMONELLA INFECTIONS (TYPHOID FEVER / ENTERIC FEVER)

Two Major Diseases:

  1. Enteric (Typhoid) Fever - caused by S. Typhi and S. Paratyphi A, B, C (humans only host)
  2. Non-typhoidal Salmonella (NTS) - many serotypes (e.g., S. Typhimurium, S. Enteritidis) - causes gastroenteritis and bacteremia

TYPHOID FEVER

Epidemiology

  • 9.2-21 million cases/year globally; 110,000-280,000 deaths/year
  • Highest incidence: India, Pakistan, Bangladesh, Nepal, Eastern Africa
  • Fecal-oral transmission; waterborne or food-borne from chronic carriers
  • Multidrug-resistant (MDR) strains emerged 1980s (resistance to chloramphenicol, ampicillin, TMP); now widely prevalent
  • XDR-S. Typhi (extensively drug-resistant): resistance to above + fluoroquinolones + third-gen cephalosporins; emerged in Pakistan 2016

Clinical Stages (Week by Week)

WeekFeatures
Week 1Gradual onset fever, headache, malaise, non-productive cough, constipation more common than diarrhea initially
Week 2High remittent fever ("step-ladder" pattern), relative bradycardia (Faget sign), rose spots (salmon-colored blanching macules on trunk, 30% of patients), splenomegaly, hepatomegaly
Week 3Complications: intestinal hemorrhage, intestinal perforation (most serious complication), septicemia, altered mental status ("typhoid state")
Week 4Defervescence and recovery (if treated) or continued deterioration

Complications

  • Intestinal perforation (~3% in endemic areas, peak week 3)
  • GI hemorrhage
  • Hepatitis, cholecystitis (chronic carrier state in bile)
  • Neurological (encephalopathy, meningitis, cerebellar ataxia)
  • Myocarditis
  • Relapse in ~10% (usually milder)
  • Chronic carrier state: ~3% after acute illness; gallbladder colonization; associated with gallstones; slight increase in gallbladder carcinoma risk

Diagnosis

  • Blood culture: positive in 60-80% of first week (most sensitive early)
  • Bone marrow culture: gold standard, positive in ~90% even after antibiotics started
  • Stool culture: positive weeks 2-3
  • Widal test (serology): historical, poor specificity and sensitivity - not recommended
  • PCR (blood/urine) emerging

Treatment

Drug ResistanceFirst-Line
Susceptible S. TyphiFluoroquinolone (ciprofloxacin)
MDR (Cl/Amp/TMP resistant)Ceftriaxone or fluoroquinolone
DSC/Fluoroquinolone-resistantCeftriaxone or azithromycin
XDR (resistant to all above)Azithromycin or carbapenems
  • Dexamethasone for severe disease with encephalopathy/shock (0.3 mg/kg then 0.1 mg/kg q6h x2 days)
  • Chronic carrier: ciprofloxacin 750mg BD x28 days (if susceptible); cholecystectomy for gallstone-associated carriers

Vaccines

  • Vi polysaccharide vaccine (ViCPS): single IM dose; adults and children >2 years; 50-80% efficacy
  • Ty21a oral live attenuated vaccine: 3-4 capsules on alternate days; children >6 years
  • Typhoid conjugate vaccine (TCV): newer; Vi polysaccharide conjugated to carrier protein; children ≥6 months; WHO recommended for endemic countries

NON-TYPHOIDAL SALMONELLA (NTS)

  • Reservoir: poultry, eggs, reptiles, livestock
  • Transmission: undercooked eggs/poultry, unpasteurized dairy, produce contaminated with animal feces; reptile contact (turtles - important in US children)
  • Most common: S. Enteritidis, S. Typhimurium

Clinical Syndromes

  1. Gastroenteritis (most common): watery or bloody diarrhea, fever, cramps; 6-72 hours incubation; self-limiting 3-7 days
  2. Bacteremia: elderly, infants, immunocompromised (HIV, sickle cell anemia - predisposition due to opsonization defect), malnutrition
  3. Focal infections: osteomyelitis (sickle cell disease - S. Typhimurium is the most common cause of osteomyelitis in sickle cell patients), endovascular infections (atherosclerotic plaques/aneurysms), meningitis in infants

Treatment NTS

  • Gastroenteritis: supportive (do NOT use antibiotics routinely - prolongs carriage)
  • Antibiotics for: infants <3 months, elderly, immunocompromised, bacteremia, severe disease
  • Drugs: ciprofloxacin, ceftriaxone, azithromycin

CHAPTER 172 - SHIGELLOSIS

Organism

  • Gram-negative non-motile rod; facultative anaerobe
  • 4 species (serogroups):
    • S. dysenteriae type 1 (Group A): most severe; produces Shiga toxin (Stx1); epidemic dysentery
    • S. flexneri (Group B): most common in developing countries
    • S. boydii (Group C): rare
    • S. sonnei (Group D): most common in developed countries; mildest disease

Epidemiology

  • Humans are the only reservoir (unlike Salmonella)
  • Very low infectious dose: 10-200 organisms (extremely contagious)
  • Fecal-oral transmission; waterborne and foodborne; person-to-person (daycare, institutions)
  • Global burden: ~188 million cases/year; responsible for ~200,000 deaths, mostly children <5

Pathogenesis

  • Invades colonic epithelium via M cells of Peyer's patches → intracellular spread → mucosal ulceration
  • Intracellular motility via actin polymerization (APC/N-WASP/Arp2/3 complex)
  • Shiga toxin (Stx1 from S. dysenteriae type 1): inhibits protein synthesis (cleaves 28S rRNA) → cell death; can cause HUS (hemolytic-uremic syndrome)

Clinical Features

  • Incubation 1-4 days
  • Watery diarrhea initially → progresses to dysentery: small-volume bloody mucoid stools with tenesmus, fever, cramps
  • "Paradoxical": fever + small bloody stools + tenesmus (vs. large watery stools in cholera)
  • Severe: febrile seizures in children, toxic megacolon, perforation (rare)
  • S. dysenteriae type 1: can cause HUS (microangiopathic hemolytic anemia + thrombocytopenia + renal failure)

Diagnosis

  • Stool culture: selective media (XLD, MacConkey agar); non-lactose fermenting colonies
  • PCR for gastrointestinal pathogens (multiplex panels)
  • Stool wet prep: PMNs + RBCs

Treatment

Antibiotic SusceptibilityTreatment
SusceptibleCiprofloxacin 500mg BD x3 days (or TMP-SMX)
Fluoroquinolone-resistantAzithromycin 500mg daily x3-5 days
Severe/S. dysenteriae type 1IV ceftriaxone
  • Avoid antidiarrheal agents (loperamide) - may worsen disease and predispose to toxic megacolon
  • ORS for hydration; nutritional support

CHAPTER 173 - CHOLERA

Organism

  • Vibrio cholerae - gram-negative curved rod (comma-shaped); highly motile (single polar flagellum)
  • O1 and O139 serogroups cause epidemic cholera
  • O1 has 2 biotypes: Classical and El Tor (currently dominant globally)
  • El Tor biotype: 2 serotypes - Ogawa and Inaba
  • The ongoing 7th pandemic (since 1961) is due to El Tor biotype

Virulence

  • Cholera toxin (CT): ADP-ribosylates Gs → permanently activates adenylyl cyclase → massive ↑cAMP → chloride secretion, sodium absorption inhibited → massive watery diarrhea
  • CT gene on the filamentous bacteriophage CTXφ
  • Toxin-coregulated pili (TCP): colonization factor; receptor for CTXφ

Clinical Features

  • Incubation: hours to 5 days
  • Classic presentation: sudden onset "rice-water" diarrhea (large volume, watery, white flecks of mucus, no blood, fishy odor) + vomiting
  • Fluid loss up to 1 liter/hour → severe dehydration, electrolyte imbalance
  • Rapid progression to: sunken eyes, dry mouth, poor skin turgor, hypotension, hypovolemic shock, "washerwoman's hands"
  • Death from hypovolemia and metabolic acidosis if untreated; case fatality rate can reach 50% untreated vs <1% with treatment

Diagnosis

  • Clinical in endemic areas
  • Stool dark-field microscopy: "shooting star" motility
  • Culture on TCBS agar (thiosulfate-citrate-bile salts-sucrose agar): yellow colonies (O1 ferments sucrose)
  • PCR

Treatment

  • ORAL REHYDRATION SOLUTION (ORS) = cornerstone of treatment; WHO/UNICEF ORS = glucose + Na + K + citrate
  • Severe dehydration: IV Ringer's lactate
  • Antibiotics: shorten duration and reduce shedding (do not replace ORS):
    • Doxycycline 300mg single dose (adults) - first-line
    • Azithromycin 1g single dose (preferred in pregnant women and children)
    • Ciprofloxacin 1g single dose alternative
  • Zinc supplementation in children reduces duration

Vaccines

  • Oral cholera vaccines (OCV): Dukoral (WC-rBS), Shanchol, Euvichol-Plus
  • Dukoral: also contains CTB subunit - provides some protection against ETEC
  • 2-dose schedule; 85-90% efficacy for 2 years

CHAPTER 174 - BRUCELLOSIS

Organism

  • Gram-negative coccobacilli; intracellular pathogen (lives within macrophages)
  • Four main species in humans:
    • B. melitensis (goats, sheep, camels) - most common and most virulent
    • B. abortus (cattle) - causes undulant fever
    • B. suis (pigs) - severe systemic disease
    • B. canis (dogs) - less common in humans
  • Zoonosis: humans are accidental hosts

Epidemiology

  • Endemic: Mediterranean, Middle East, Indian subcontinent, Latin America, sub-Saharan Africa
  • Transmission routes: unpasteurized dairy products (most common worldwide), direct contact with infected animals or their products (placentas, aborted fetuses), inhalation of aerosols (lab workers, abattoir workers), rare: sexual transmission
  • Occupational risk: veterinarians, farmers, abattoir workers, lab personnel

Clinical Features - "The Great Imitator"

  • Incubation 2-4 weeks (can be up to months)
  • Undulant fever (fever waves, rises in afternoon/evening then sweats and defervescence)
  • Malaise, night sweats, arthralgia, myalgia, weight loss, depression
  • Hepatosplenomegaly in 25%
  • Osteoarticular disease (most common focal complication, ~30-40%):
    • Sacroiliitis (most common)
    • Spondylitis (lumbar spine most common; distinguish from TB - see table)
    • Peripheral arthritis (hip, knee)
  • Endocarditis (~1% of cases; most serious complication; aortic valve; high mortality without surgery)
  • Epididymo-orchitis in ~10% of men
  • Neurobrucellosis: meningoencephalitis, cranial nerve palsies, cerebral abscess (rare)
  • Respiratory (25%): dry cough, hilar adenopathy

Brucellosis vs TB Spinal Involvement (Table 174-1):

FeatureBrucellosisTB
SiteLumbar (any)Dorsolumbar
DiskitisLateEarly
Canal compressionRareCommon
Paravertebral abscessSmall, well-localizedLarge
Psoas abscessRareMore common
OsteophyteParrot-beak (anterolateral)Unusual

Diagnosis

  • Blood culture: definitive but only 15-70% positive; prolonged incubation needed
  • Serology: Standard Agglutination Test (SAT or Wright's test); titer ≥1:160 significant; rising titers diagnostic
  • 2-mercaptoethanol (2-ME) test distinguishes IgG (active/chronic) from IgM (early/acute)
  • Bone marrow culture: highest sensitivity (~90%)
  • PCR increasingly used
  • Biochemical findings: mild anemia, leukopenia, thrombocytopenia, elevated LFTs

Treatment - Must be combination + prolonged (intracellular organism)

  • First-line: Doxycycline 200mg/day x6 weeks + Rifampicin 600-900mg/day x6 weeks
  • Alternative (spondylitis, endocarditis, neurobrucellosis): Doxycycline x6 weeks + streptomycin or gentamicin x2-3 weeks (streptomycin preferred for spondylitis)
  • Endocarditis: triple therapy + usually requires valve replacement
  • Children and pregnancy: TMP-SMX + rifampicin (avoid doxycycline in pregnancy/children)
  • Relapse is common if treatment is incomplete or short

CHAPTER 175 - TULAREMIA

Organism

  • Francisella tularensis - gram-negative coccobacillus; facultative intracellular (lives in macrophages)
  • Two subspecies: tularensis (Type A - more virulent, North America) and holarctica (Type B - less virulent, Eurasia and North America)
  • Potential bioterrorism agent (Category A); extremely low infectious dose (~10 organisms)

Epidemiology

  • Reservoir: rabbits, hares, voles, muskrats, ticks, deer flies
  • Transmission:
    • Tick bite (Dermacentor, Amblyomma) or deer fly bite - most common in US
    • Direct contact with infected animals (hunters, trappers) - handling rabbit carcasses
    • Ingestion of contaminated water or undercooked meat
    • Inhalation of aerosols (most dangerous - causes pneumonic form)

Clinical Forms (6 types)

TypeFeatures
Ulceroglandular (most common, 75-85%)Painful ulcer at inoculation site + regional lymphadenopathy
Glandular (5-10%)Lymphadenopathy without ulcer
OculoglandularConjunctivitis + periauricular/cervical adenopathy (Parinaud's oculoglandular syndrome)
OropharyngealPharyngitis + cervical adenopathy from ingestion
Typhoidal (Septicemic)Systemic illness without localizing signs; high fever, septic shock; from any route
PneumonicPrimary (inhalation) or secondary (hematogenous spread); lobar pneumonia; highest mortality

Diagnosis

  • Culture hazardous (BSL-3); require notifying lab
  • Serology (agglutination test): titer ≥1:160 diagnostic; paired sera show 4-fold rise
  • PCR (blood, lymph node aspirate)
  • Intradermal skin test (historical)

Treatment

  • Streptomycin 7.5-10 mg/kg IM q12h x10-14 days = drug of choice (best evidence)
  • Gentamicin alternative (easier to use)
  • Doxycycline or ciprofloxacin (oral options; higher relapse rate than aminoglycosides)
  • Post-exposure prophylaxis (bioterrorism exposure): doxycycline or ciprofloxacin x14 days

CHAPTER 176 - PLAGUE

Organism

  • Yersinia pestis - gram-negative coccobacillus (bipolar staining "safety-pin" appearance on Wayson stain)
  • Potential bioterrorism agent (Category A); historically caused Black Death pandemic

Epidemiology

  • Natural reservoir: rodents (rats, prairie dogs, squirrels); fleas are vectors
  • Transmission:
    • Flea bite (most common): Xenopsylla cheopis (rat flea)
    • Direct contact with infected animal tissues
    • Inhalation of respiratory droplets from pneumonic plague patients (human-to-human; only form of person-to-person transmission)
  • Endemic: western US (New Mexico, Arizona, Colorado), sub-Saharan Africa, Central Asia, Peru

Three Clinical Forms

1. Bubonic Plague (most common, 80-85%)

  • Flea bite → organisms travel to regional lymph nodes → massive lymph node swelling = BUBO
  • Bubo most common in inguinal/femoral (flea bite on leg), then axillary, then cervical
  • Painful, swollen, fluctuant lymph node (5-8 cm); surrounding edema
  • Sudden high fever, chills, malaise, headache; incubation 2-8 days
  • Can progress to septicemia and pneumonic plague

2. Septicemic Plague

  • Bacteremia without visible bubo (primary) or from bubonic plague (secondary)
  • High fever, shock, DIC, purpura fulminans (→ "Black Death")
  • Highest untreated mortality

3. Pneumonic Plague (most dangerous, most feared bioterrorism form)

  • Primary (inhalation) or secondary (spread from bacteremia)
  • Severe pneumonia; watery, bloody sputum; rapid deterioration; near 100% fatal if untreated within 24 hours
  • Can spread human-to-human (only form to do so) via respiratory droplets

Diagnosis

  • Gram stain of bubo aspirate: safety-pin appearing gram-negative rods (Wayson or Giemsa better)
  • Culture (BSL-3 facility required)
  • Serology (passive hemagglutination)
  • PCR
  • Direct fluorescent antibody (DFA) staining

Treatment (time-critical)

  • Streptomycin 15 mg/kg IM q12h x10 days = drug of choice
  • Gentamicin is equally effective (preferred in many guidelines)
  • Doxycycline or ciprofloxacin alternative
  • Pneumonic plague: strict respiratory isolation + immediate antibiotics (death within 24-36h if untreated)
  • Post-exposure prophylaxis: doxycycline or ciprofloxacin x7 days

CHAPTER 177 - BARTONELLA INFECTIONS (INCLUDING CAT SCRATCH DISEASE)

Organism

  • Gram-negative intracellular coccobacilli; facultative intracellular organisms
  • Key species:
    • B. henselae - Cat scratch disease, bacillary angiomatosis, peliosis hepatis
    • B. quintana - Trench fever, bacillary angiomatosis (in homeless/immunocompromised)
    • B. bacilliformis - Oroya fever and Verruga peruana (South America - Carrion's disease)

CAT SCRATCH DISEASE (B. henselae)

Epidemiology

  • Cats are reservoir; cat fleas (Ctenocephalides felis) maintain bacteremia in cats
  • Humans infected via cat scratch or bite (flea feces contaminated onto wound)
  • Children and young adults most commonly affected
  • ~25,000 cases/year in US (September-February peak)

Clinical Features

  • Primary inoculation site: papule/pustule at scratch site 3-10 days after injury
  • Regional lymphadenopathy (2-8 weeks later): tender, swollen lymph nodes (axillary, cervical, submandibular, inguinal - depends on scratch site); nodes may suppurate
  • Systemic symptoms: low-grade fever, malaise, headache in ~30%
  • Parinaud's oculoglandular syndrome: granulomatous conjunctivitis + ipsilateral preauricular adenopathy (from conjunctival inoculation by contaminated hands)
  • Self-limiting in immunocompetent (lymph nodes resolve in 2-4 months)

Severe/Atypical Manifestations

  • Neuroretinitis: blurred vision, macular star on fundoscopy
  • Encephalopathy (rare)
  • Hepatosplenic CSD (bacillary peliosis in immunocompromised)
  • Systemic disease: pneumonia, osteomyelitis (in immunocompromised/HIV)

BACILLARY ANGIOMATOSIS (in HIV/immunocompromised)

  • B. henselae or B. quintana
  • Vascular proliferative disease: red-to-purple papules/nodules resembling Kaposi's sarcoma
  • Can involve skin, lymph nodes, liver (peliosis hepatis), spleen, bone
  • Distinguished from KS histologically: lobular capillary proliferation with neutrophilic infiltrate + bacteria on Warthin-Starry silver stain

Diagnosis CSD

  • Clinical diagnosis in immunocompetent with typical presentation
  • Serology (anti-B. henselae IgG): titer ≥1:64 supportive; ≥1:256 diagnostic
  • PCR on lymph node tissue
  • Histology: stellate granulomas with central necrosis; Warthin-Starry silver stain shows pleomorphic bacilli

Treatment

  • Immunocompetent CSD: usually self-limiting; azithromycin shortens duration (500mg day 1, 250mg days 2-5)
  • Bacillary angiomatosis (HIV): doxycycline or erythromycin x3 months minimum; lifelong suppression in AIDS if CD4 <100
  • Neuroretinitis: doxycycline + rifampicin

TRENCH FEVER (B. quintana)

  • Transmitted by body louse (Pediculus humanus corporis) via louse feces in skin abrasions
  • Classic in WWI soldiers; now in homeless populations and refugees
  • Relapsing fever (5-day fever/Quintan fever), bone pain (tibial pain classic), headache
  • Treatment: doxycycline + gentamicin

CARRION'S DISEASE (B. bacilliformis)

  • Endemic to Andes mountains (Peru, Ecuador, Colombia) - transmitted by sandfly (Lutzomyia)
  • Phase 1 - Oroya fever: acute hemolytic anemia; RBCs heavily parasitized; high mortality if untreated
  • Phase 2 - Verruga peruana: chronic phase; vascular skin lesions (hemangioma-like nodules)
  • Treatment: chloramphenicol (Oroya fever - also covers secondary Salmonella); rifampicin or azithromycin

CHAPTER 178 - DONOVANOSIS (Granuloma Inguinale)

Organism

  • Klebsiella granulomatis (formerly Calymmatobacterium granulomatis)
  • Gram-negative intracellular bacillus; cannot be cultured on standard media

Epidemiology

  • STI; low-to-moderate infectivity; requires repeated exposure
  • Endemic: Papua New Guinea, parts of India, South Africa, Brazil, Caribbean
  • Rare in US and Europe

Clinical Features

  • Painless, progressive genital ulcers (vs. painful in chancroid and herpes)
  • No regional lymphadenopathy (unlike LGV, syphilis, chancroid) - "pseudobuboes" = subcutaneous granulomata extending to skin, NOT true lymphadenopathy
  • Four clinical types:
    1. Ulcerogranulomatous (most common): beefy-red, friable, bleeding granulation tissue
    2. Hypertrophic/verrucous: raised, dry, irregular ulcers
    3. Necrotic: destructive, foul-smelling, tissue destruction
    4. Sclerotic/cicatricial: fibrous scarring
  • Extragenital spread (rare): mouth, liver, spleen, bone

Diagnosis

  • Donovan bodies: intracellular "safety-pin" bacilli seen in Wright-Giemsa or Leishman stain of tissue biopsy or crush preparation from ulcer edge
  • PCR available in reference labs
  • Cannot culture on standard media

Treatment

  • Azithromycin 1g weekly or 500mg daily x minimum 3 weeks (until lesions fully healed) = preferred
  • Alternatives: doxycycline 100mg BD, TMP-SMX, erythromycin, ciprofloxacin - all x minimum 3 weeks

QUICK REFERENCE COMPARISON TABLE

DiseaseOrganismKey TransmissionHallmark FindingFirst-Line Treatment
MeningococcalN. meningitidisRespiratory dropletsPurpuric rash, DICCeftriaxone
H. influenzaeH. influenzae type bRespiratoryGram-neg coccobacilli in CSFCeftriaxone + dexamethasone
PertussisB. pertussisRespiratory100-day cough, lymphocytosisAzithromycin
H. pyloriH. pyloriFecal-oralUrease positive, PUDPPI + clarithromycin + amoxicillin
CampylobacterC. jejuniUndercooked poultryGBS trigger; curved gram-neg rodAzithromycin
PseudomonasP. aeruginosaWater/hospitalEcthyma gangrenosum, blue-green pusPiperacillin-taz + aminoglycoside
TyphoidS. TyphiFecal-oral (water)Rose spots, step-ladder feverCeftriaxone/azithromycin (XDR)
ShigellosisShigella spp.Fecal-oral (person-to-person)Very low infective dose; dysenteryCiprofloxacin/azithromycin
CholeraV. cholerae O1/O139WaterborneRice-water diarrheaORS + doxycycline
BrucellosisBrucella spp.Unpasteurized dairyUndulant fever, sacroiliitisDoxycycline + rifampicin x6 weeks
TularemiaF. tularensisTick bite/rabbit contactUlcer + adenopathyStreptomycin/gentamicin
PlagueY. pestisFlea biteBubo; safety-pin stainingStreptomycin/gentamicin
Cat Scratch DiseaseB. henselaeCat scratchStellate granulomas, buboAzithromycin
DonovanosisK. granulomatisSexual contactDonovan bodies, painless ulcerAzithromycin

HIGH-YIELD EXAM POINTS

  • "Safety-pin" staining: Y. pestis (plague) AND K. granulomatis (donovanosis - both on Wayson/Giemsa)
  • Streptomycin = drug of choice: Both plague AND tularemia
  • Doxycycline + rifampicin x6 weeks: Brucellosis
  • GBS post-infectious: C. jejuni (most common trigger), also CMV, EBV, HIV
  • Ecthyma gangrenosum: Pseudomonas aeruginosa bacteremia in neutropenic patient
  • Meningitis belt: Group A meningococcal disease in sub-Saharan Africa
  • Chocolate agar (X and V factors): H. influenzae
  • Bordet-Gengou agar: B. pertussis
  • TCBS agar (yellow colonies): V. cholerae O1
  • Widal test: Historical, unreliable; bone marrow culture is gold standard for typhoid
  • Rifampicin chemoprophylaxis: Meningococcal (600mg BD x2 days) AND Hib contacts
  • Vi polysaccharide vaccine: Typhoid (protects against S. Typhi only)
  • Ty21a: Oral live typhoid vaccine; not for immunocompromised
  • B. henselae vs B. quintana: both cause bacillary angiomatosis; quintana transmitted by lice (trench fever); henselae by cat scratch
  • XDR typhoid from Pakistan: Resistant to everything including fluoroquinolones + cephalosporins → only azithromycin or carbapenems work
  • Cholera toxin mechanism: ADP-ribosylates Gs protein → ↑cAMP → rice-water diarrhea
  • Pertussis toxin mechanism: ADP-ribosylates Gi/inhibitory G protein (same enzyme but opposite target to cholera)
  • H. pylori eradication: Always test for cure with UBT or stool antigen ≥4 weeks after finishing treatment
  • Sickle cell + osteomyelitis: Think Salmonella (though Staph aureus is still overall most common)
  • HACEK endocarditis: Subacute; prior dental work; treat with ceftriaxone x4 weeks

Source: Harrison's Principles of Internal Medicine, 22nd Edition (2025), McGraw-Hill Medical - Section 6 (Chapters 160-178), pp. 1285-1385
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