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MHC class I and II antigen presentation NIH NCBI Bookshelf

Major Histocompatibility Complex (MHC) / HLA: Exam Notes

Definition

Major histocompatibility complex (MHC) is a group of genes that encode cell-surface glycoproteins which bind peptide antigens and present them to T lymphocytes.
  • In humans, MHC molecules are called Human Leukocyte Antigens (HLA).
  • They were first identified on leukocytes but are present on many other cells.
  • They act as an individual-specific genetic identity marker.
  • They are important in:
    1. Antigen presentation to T cells
    2. Transplant rejection or graft acceptance
    3. Disease susceptibility
MHC presents peptide antigens, not intact antigens, to T cells. Class I mainly presents cytosolic antigens to CD8 T cells, while Class II mainly presents vesicular/exogenous antigens to CD4 T cells, as summarized in NCBI Immunobiology.

Location and Organization of HLA Genes

  • Located on the short arm of chromosome 6 (6p).
  • HLA complex spans about 4000 kb.
  • Contains more than 100 genes.
  • Divided into three regions:
MHC regionImportant gene products / examplesMain role
Class IHLA-A, HLA-B, HLA-CPresents endogenous antigen to CD8 T cells
Class IIHLA-DP, HLA-DQ, HLA-DRPresents exogenous antigen to CD4 T cells
Class IIIComplement proteins, TNF, HSP70Inflammation and immune functions, not antigen presentation

Key point

All three MHC regions are on chromosome 6, but only Class I and II directly participate in antigen presentation.

MHC Class I

Genes

  • HLA-A
  • HLA-B
  • HLA-C
These genes encode the alpha (α) chain of MHC Class I.

Distribution

Present on:
  • All nucleated cells
  • Platelets
Absent on:
  • RBCs because they lack a nucleus

Structure

MHC Class I molecule consists of:
  1. One α-chain
    • Glycoprotein, approximately 45 kDa
    • Encoded by HLA-A, HLA-B, or HLA-C
    • Has three extracellular domains: α1, α2, α3
    • Has a transmembrane segment and cytoplasmic tail
  2. β2-microglobulin
    • Approximately 12 kDa
    • Non-glycosylated
    • Encoded on chromosome 15, not chromosome 6
    • Necessary for stable surface expression of MHC I

Peptide-binding groove

  • Formed by the cleft between α1 and α2 domains.
  • Binds peptides of 8-10 amino acids.

T-cell interaction

  • α3 domain binds CD8 co-receptor.
  • Therefore, MHC I presents antigen to CD8+ cytotoxic T cells.

Antigen source and pathway

  • Presents endogenous / intracellular antigens.
  • Examples:
    • Viral proteins
    • Tumor antigens
    • Other cytosolic proteins
  • Antigen processing occurs through the cytosolic pathway.

One-line answer

MHC Class I presents endogenous peptides of 8-10 amino acids to CD8+ cytotoxic T cells.

MHC Class II

Genes

  • HLA-DP
  • HLA-DQ
  • HLA-DR
Each has genes that encode both α and β chains.

Distribution

MHC Class II is expressed mainly on professional antigen-presenting cells (APCs):
  • Dendritic cells
  • Macrophages
  • B lymphocytes

Structure

MHC Class II molecule consists of:
  1. α-chain
    • About 33 kDa
    • Domains: α1 and α2
  2. β-chain
    • About 28 kDa
    • Domains: β1 and β2
Both chains have transmembrane portions and cytoplasmic tails.

Peptide-binding groove

  • Formed by the cleft between α1 and β1 domains.
  • Binds peptides of 13-18 amino acids.

T-cell interaction

  • β2 domain binds CD4 co-receptor.
  • Thus, MHC II presents antigen to CD4+ helper T cells.

Antigen source and pathway

  • Presents exogenous antigens that are taken up by endocytosis or phagocytosis.
  • Examples:
    • Extracellular bacteria
    • Toxins
    • Soluble proteins
  • Antigen processing occurs through the endocytic pathway.

One-line answer

MHC Class II presents exogenous peptides of 13-18 amino acids to CD4+ helper T cells.

MHC Class III

Location and contents

  • Lies between MHC Class I and MHC Class II regions.
  • About 1000 kb long.
  • Does not take part in antigen presentation.
It encodes:
  • Complement components: C2, C4
  • Factor B
  • Properdin-related factors
  • Heat shock protein 70 (HSP70)
  • Tumor necrosis factor: TNF-α and TNF-β
  • Steroid 21-hydroxylase

Exam point

MHC Class III genes code for inflammatory and complement-related proteins, not MHC antigen-presenting molecules.

Differences Between MHC Class I and MHC Class II

FeatureMHC Class IMHC Class II
GenesHLA-A, HLA-B, HLA-CHLA-DP, HLA-DQ, HLA-DR
Cells expressing itAll nucleated cells and plateletsAPCs: dendritic cells, macrophages, B cells
Antigen originEndogenous / intracellularExogenous / extracellular
Examples of antigensViral and tumor antigensBacterial and soluble protein antigens
Processing pathwayCytosolic pathwayEndocytic pathway
Peptide-binding grooveα1 + α2α1 + β1
Peptide length8-10 amino acids13-18 amino acids
Presented toCD8+ T cellsCD4+ T cells
Co-receptor binding domainα3 binds CD8β2 binds CD4
Molecular structureα chain + β2-microglobulinα chain + β chain
Main functionCytotoxic T-cell responseHelper T-cell activation

Mnemonic

“1 x 8 = CD8”
  • MHC I presents 8-10 aa peptides to CD8 T cells.
“2 x 4 = CD4”
  • MHC II presents to CD4 T cells.
Another memory aid:
  • Class I = Inside antigen
  • Class II = Ingested antigen

MHC in Transplantation

After graft transplantation:
  • The recipient can mount an immune response against donor MHC molecules.
  • Greater donor-recipient MHC mismatch leads to a greater likelihood of rejection.
  • Better HLA matching improves graft compatibility.
Therefore, MHC molecules are termed histocompatibility antigens.

High-yield statement

HLA matching is important in organ and bone marrow transplantation because HLA disparity promotes graft rejection.

HLA and Disease Susceptibility

Certain HLA alleles are associated with increased susceptibility to diseases.
HLA alleleImportant association
HLA-B27Ankylosing spondylitis, reactive arthritis, Reiter syndrome
HLA-DR2Multiple sclerosis, Goodpasture syndrome
HLA-DR3Myasthenia gravis, systemic lupus erythematosus
HLA-DR3 / DR4Type 1 diabetes mellitus
HLA-DR4Rheumatoid arthritis
HLA-A3 / B14Hereditary hemochromatosis

Must remember

  • B27 = Ankylosing spondylitis
  • DR4 = Rheumatoid arthritis
  • DR3 = SLE
  • DR3/DR4 = Type 1 diabetes mellitus
  • DR2 = Multiple sclerosis
Association does not mean that the disease is inevitable. It indicates increased relative risk.

Very Short Notes for Revision

  • MHC in humans = HLA system.
  • Located on chromosome 6 short arm.
  • MHC is polygenic and highly polymorphic.
  • Class I: A, B, C, all nucleated cells, endogenous antigen, CD8, 8-10 aa peptide.
  • Class II: DP, DQ, DR, APCs, exogenous antigen, CD4, 13-18 aa peptide.
  • Class III: complement proteins, TNF, HSP70, no antigen presentation.
  • MHC determines tissue compatibility and influences transplant rejection.
  • β2-microglobulin is part of MHC I and is encoded on chromosome 15.
  • Class I peptide groove = α1 + α2.
  • Class II peptide groove = α1 + β1.

Common Exam Questions

  1. Define MHC. State its functions.
  2. Describe the genetic organization of human MHC.
  3. Compare MHC Class I and Class II molecules.
  4. Draw and label the structure of MHC Class I and Class II.
  5. Explain endogenous and exogenous antigen presentation pathways.
  6. Enumerate diseases associated with HLA alleles.
  7. Why is HLA matching important in transplantation?

Make a one-page MHC revision chart

Reading File

MHC / HLA: One-Page Revision Chart

1. Core Facts

PointRecall
Full formMajor Histocompatibility Complex
Human nameHLA: Human Leukocyte Antigen
LocationShort arm of chromosome 6
Main rolePresents peptide antigen to T cells
Clinical importanceTransplant compatibility, immune response, disease associations
Key propertiesPolygenic and highly polymorphic

2. MHC Gene Regions

RegionGenes / ProductsFunction
Class IHLA-A, B, CAntigen presentation to CD8 T cells
Class IIHLA-DP, DQ, DRAntigen presentation to CD4 T cells
Class IIIC2, C4, Factor B, TNF, HSP70Complement/inflammatory proteins. No antigen presentation

3. MHC Class I vs Class II

FeatureMHC Class IMHC Class II
HLA genesA, B, CDP, DQ, DR
Present onAll nucleated cells + plateletsAPCs: dendritic cells, macrophages, B cells
Absent onRBCsMost non-APCs
Antigen sourceEndogenous: viral, tumor, cytosolic proteinsExogenous: ingested extracellular proteins/bacteria
Antigen pathwayCytosolic pathwayEndocytic pathway
Presented toCD8+ cytotoxic T cellCD4+ helper T cell
Peptide length8-10 amino acids13-18 amino acids
Molecule structureα chain + β2-microglobulinα chain + β chain
Peptide-binding grooveα1 + α2α1 + β1
Co-receptor binding siteα3 binds CD8β2 binds CD4

Memory tricks

  • MHC I = Inside = CD8
  • MHC II = Ingested = CD4
  • 1 × 8 = CD8: Class I presents 8-10 aa peptide to CD8 cells.
  • 2 × 4 = CD4: Class II presents antigen to CD4 cells.

4. Structures

MHC Class I

α1 + α2  → peptide-binding groove
α3       → binds CD8
β2-microglobulin → stabilizes MHC I molecule

α-chain encoded by HLA-A, HLA-B, HLA-C
β2-microglobulin encoded on chromosome 15

MHC Class II

α1 + β1 → peptide-binding groove
β2      → binds CD4

Both α and β chains are encoded by HLA-DP, DQ, DR genes.

5. Transplantation

More HLA mismatch → stronger recipient immune response → greater graft rejection
Better HLA matching → better graft compatibility
MHC molecules are called histocompatibility antigens because they determine compatibility between donor graft and recipient.

6. HLA Disease Associations

HLA alleleAssociated disease
HLA-B27Ankylosing spondylitis, reactive arthritis
HLA-DR2Multiple sclerosis, Goodpasture syndrome
HLA-DR3SLE, myasthenia gravis
HLA-DR3 / DR4Type 1 diabetes mellitus
HLA-DR4Rheumatoid arthritis
HLA-A3 / B14Hereditary hemochromatosis

Rapid recall

B27 → Back pain → Ankylosing spondylitis
DR4 → Rheumatoid arthritis
DR3 → SLE
DR3 + DR4 → Type 1 DM
DR2 → Multiple sclerosis

Last-Minute 5 Lines

  1. MHC = HLA, located on chromosome 6.
  2. Class I: A, B, C; all nucleated cells; endogenous antigen; CD8.
  3. Class II: DP, DQ, DR; APCs; exogenous antigen; CD4.
  4. Class III: complement and TNF genes, no antigen presentation.
  5. HLA mismatch causes graft rejection; B27 is associated with ankylosing spondylitis.
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