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Case 10 - Complete Answers

(1) Most Probable Diagnosis

Enteric Fever (Typhoid Fever) caused by Salmonella enterica serotype Typhi
Justification from the case:
  • 11-year-old boy with step-ladder fever rising over 10 days - the classic presentation
  • Anorexia, vague abdominal pain, lethargy - typical prodromal/early symptoms
  • Hepatosplenomegaly on examination
  • Leukopenia (WBC 3800/cmm) with relative lymphocytosis (70%) - hallmark finding that distinguishes typhoid from bacterial sepsis (most infections raise the WBC, typhoid lowers it)
  • Positive Widal test: S. Typhi O (1:240) and H (1:320) - diagnostic titres
  • Elevated CRP (32.4 mg/L) and raised ESR (45 mm/hr) - markers of systemic inflammation
  • Malarial parasites not detected - rules out malaria as an alternative diagnosis
  • Paratyphi A and B negative - confirms S. Typhi specifically

(2) Route of Transmission

Typhoid fever is transmitted by the feco-oral route - specifically:
ModeDetails
Contaminated waterPrimary route; drinking or using water polluted with sewage containing S. Typhi
Contaminated foodFood prepared or handled by chronic carriers or contaminated by sewage-polluted water (raw vegetables, shellfish, fruits)
Direct contactHands contaminated with infected faeces; person-to-person via the 5 Fs: Flies, Fingers, Fomites, Food, Fluids
Chronic carriersGallbladder carriers (especially post-cholecystitis) continuously shed the organism in stool and sometimes urine
Pathogenesis of entry: After ingestion, S. Typhi passes through the intestinal epithelium via specialized M-cells overlying Peyer's patches, enters intestinal lymphatics, then invades the bloodstream, spreading to bone marrow, liver, spleen, and other organs. - Jawetz Melnick & Adelbergs Medical Microbiology 28E

(3) Laboratory Diagnosis of the Causative Agent (Salmonella Typhi)

A. Microbiological (Culture) - Gold Standard

SpecimenTimingYield
Blood culture1st-2nd weekPositive in 80-90% in 1st week; most reliable early test
Bone marrow cultureAny weekHighest sensitivity (~90%), even after antibiotics
Stool culture2nd week onwardPositive from 2nd week; negative early
Urine culture3rd weekIntermittently positive
Growth characteristics of S. Typhi:
  • Gram-negative rod (non-lactose fermenter)
  • On TSI agar: alkaline slant/acid butt with H2S production, no gas (K/A, H2S, no gas) - unlike other Salmonella spp. which produce gas
  • On HE agar: Black colonies due to H2S production with ferric ammonium citrate
  • Biochemical: glucose+, lactose-, H2S+, urease-, indole-, motile

B. Serological - Widal Test (Felix-Widal)

  • Detects agglutinating antibodies against O (somatic) and H (flagellar) antigens
  • O antibodies appear on day 6-8; H antibodies appear on day 10-12
  • Diagnostic titres: O antigen >1:160 and H antigen >1:160 in endemic areas; some labs use >1:320 (O) and >1:640 (H)
  • In this case: O 1:240 and H 1:320 - both positive and diagnostic
  • Limitations: false positives in malaria, typhus, other salmonelloses; false negatives in early disease or after antibiotic use; requires paired sera for definitive confirmation
  • Vi antigen titre: high titres indicate chronic carrier state

C. Newer/Rapid Diagnostic Tests

  • Typhidot test: Detects specific IgM and IgG against a 50 kDa antigen of S. Typhi; takes ~3 hours
  • Typhidot-M: Detects IgM only - useful for acute infection
  • TUBEX test: Detects IgM anti-O9 antibodies; results in minutes
  • Dipstick test: Detects S. Typhi-specific IgM antibodies using LPS antigen
  • PCR / NAATs: Nucleic acid amplification from blood or stool; highly specific but not widely available in resource-limited settings
  • Blood counts: Leukopenia with relative lymphocytosis is a supportive finding - Park's Textbook of Preventive and Social Medicine

(4) Complications When Not Treated in Time

Serious complications occur in up to 10-27% of patients, especially those ill for >2 weeks without treatment. - Harrison's Principles of Internal Medicine 22E; Park's Textbook

Intestinal Complications (Most Feared)

  • Intestinal hemorrhage - sudden drop in temperature, signs of shock, dark/fresh blood in stool; occurs in 3rd week
  • Intestinal perforation - most likely in the 3rd week; causes peritonitis, requires emergency surgery; involves Peyer's patch necrosis
  • Paralytic ileus

Systemic/Extra-intestinal Complications

SystemComplication
CardiovascularMyocarditis, relative bradycardia, thrombophlebitis
RespiratoryPneumonia, pulmonary hemorrhage
NeurologicalTyphoid psychosis, meningismus, encephalopathy
HepatobiliaryCholecystitis, hepatitis, gallbladder perforation
RenalNephritis, urinary retention
BoneOsteomyelitis (especially in sickle cell patients)
HaematologicalDisseminated intravascular coagulation (DIC)
Mortality in untreated cases: 10-20%; with appropriate antibiotics: <1% - Jawetz Melnick & Adelbergs

(5) Prophylaxis (Prevention) of Typhoid Fever

There are three main lines of defence:

1. Control of Reservoir

  • Early diagnosis and treatment of cases
  • Isolation of cases until 3 consecutive negative stool and urine cultures
  • Identification and management of chronic carriers: carriers must not handle food/water; treat with fluoroquinolones for 4-6 weeks; cholecystectomy if gallstones are present
  • Disinfection of stools and urine with 5% cresol for at least 2 hours
  • Notification to public health authorities (notifiable disease)

2. Control of Sanitation (Break Transmission)

  • Safe water supply: chlorination and purification of drinking water
  • Proper sewage disposal: prevent contamination of water sources
  • Food hygiene: safe handling, cooking, and storage of food
  • Personal hygiene: hand-washing with soap after defecation and before preparing food
  • Fly control: flies are important mechanical vectors

3. Immunization (Specific Prophylaxis)

Two licensed vaccines:
VaccineTypeRouteScheduleProtection
Vi polysaccharide vaccine (Typherix, Typhim Vi)Subunit (purified Vi capsular polysaccharide)IM or SC1 dose; re-vaccinate every 3 years50-80%; for age ≥2 years
Ty21a (Vivotif)Live attenuated oral vaccineOral capsules3-4 capsules on alternate days; booster every 5 years50-70%; for age ≥6 years
Newer vaccine:
  • Typhoid Conjugate Vaccine (TCV - TYPBAR-TCV): Vi polysaccharide conjugated to tetanus toxoid protein carrier; T-cell dependent response; single IM dose; effective from age 6 months; WHO-prequalified; recommended by WHO for endemic areas
Recommended for:
  • Residents of endemic areas
  • Household contacts of confirmed cases
  • School children and hospital staff
  • Travelers to endemic regions
Sources: Park's Textbook of Preventive and Social Medicine; Jawetz Melnick & Adelbergs Medical Microbiology 28E; Harrison's Principles of Internal Medicine 22E
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Case 11 - Complete Answers

(1) Provisional Diagnosis

Streptococcal Pharyngitis / Tonsillitis with Peritonsillar Abscess
  • Causative agent: Streptococcus pyogenes (Group A Beta-Hemolytic Streptococcus / GABHS)
Clues in the case:
  • 8-year-old child (peak age for streptococcal pharyngitis: 5-15 years)
  • Sore throat + fever for 5 days, with recurrent similar episodes in the past
  • Peritonsillar abscess on examination - a classic suppurative complication of GABHS pharyngitis
  • Throat swab grew beta-hemolytic colonies on blood agar - the image shows opaque white colonies surrounded by a clear zone of complete (beta) hemolysis, exactly as seen with S. pyogenes
  • Chest clear - ruling out lower respiratory tract infection

(2) Classification of the Causative Pathogen (Streptococcus pyogenes)

Morphological Classification

  • Gram-positive cocci arranged in chains
  • Facultatively anaerobic
  • Catalase-negative (distinguishes from Staphylococcus)
  • Non-spore forming, non-motile

Hemolytic Classification (Brown's classification - by pattern on blood agar)

TypeHemolysisExample
Beta (β)-hemolysisComplete, clear zone around coloniesS. pyogenes (this case)
Alpha (α)-hemolysisPartial, greenish discolorationS. pneumoniae, viridans group
Gamma (γ)-hemolysisNo hemolysisEnterococcus faecalis

Lancefield Serological Classification (based on cell wall carbohydrate antigens)

S. pyogenes = Group A streptococcus
GroupSpeciesClinical Significance
AS. pyogenesPharyngitis, impetigo, rheumatic fever, PSGN
BS. agalactiaeNeonatal meningitis, GBS
C & GS. dysgalactiaePharyngitis, skin infections
DEnterococcus / S. bovisUTI, endocarditis
"Using the Lancefield classification, hemolytic streptococci can be classified into types A through G based on acid-extractable carbohydrate antigens of cell wall material. The major pathogenic β-hemolytic streptococci are group A (Streptococcus pyogenes) and group B (Streptococcus agalactiae)." - Goldman-Cecil Medicine

Further Classification of S. pyogenes

  • M-protein typing: >150 different M protein serotypes based on the N-terminal variable region of M protein - used for epidemiological typing
  • T-antigen typing: Based on trypsin-resistant surface proteins
  • Emm gene sequencing: Molecular epidemiological tool

(3) Non-Suppurative Complications of GABHS Infection

Non-suppurative complications are those that occur at a site distant from the original infection, mediated by immunological mechanisms (not direct bacterial invasion). They develop 1-4 weeks after the acute infection.

1. Acute Rheumatic Fever (ARF)

  • Occurs ~2 weeks after acute streptococcal pharyngitis (not skin infection)
  • Mechanism: Molecular mimicry - antibodies against streptococcal M protein cross-react with cardiac tissue (particularly cardiac myosin), synovial tissue, and basal ganglia
  • Revised Jones Criteria for diagnosis:
Major CriteriaMinor Criteria
Carditis (pancarditis, valvulitis - mitral > aortic)Fever ≥38.5°C
Polyarthritis (large joints, migratory)Elevated ESR/CRP
Sydenham's Chorea (involuntary, purposeless movements)Prolonged PR interval
Erythema marginatum (trunk/proximal limbs)Polyarthralgia (if arthritis not major)
Subcutaneous nodules (over bony prominences)
  • Complications: Rheumatic heart disease (35-70% progress); mitral stenosis/regurgitation is the most common long-term valvular lesion
  • Note: ARF does NOT follow skin infection (impetigo)

2. Post-Streptococcal Glomerulonephritis (PSGN)

  • Can follow both pharyngitis AND skin infections (impetigo)
  • Onset: 1-3 weeks after pharyngitis, or 3-6 weeks after skin infection
  • Mechanism: Immune complex deposition (Type III hypersensitivity) in glomeruli
  • Features: Hematuria (cola-colored urine), proteinuria, edema, hypertension, oliguria
  • Most cases resolve spontaneously; rarely progresses to chronic renal failure
  • Important: Treating the streptococcal infection does NOT prevent PSGN (unlike ARF)

3. Post-Streptococcal Reactive Arthritis (PSRA)

  • Distinct from the arthritis of ARF
  • Does not fulfill Jones criteria for ARF
  • Occurs after both pharyngeal and skin infections
  • Large and small joints affected
  • Less responsive to aspirin/NSAIDs than ARF arthritis
  • May have carditis but less severe than ARF

4. Scarlet Fever

  • Caused by strains producing pyrogenic exotoxins (erythrogenic toxins A, B, C) acting as superantigens
  • Features: Strawberry tongue, sandpaper rash (truncal, sparing face), Pastia's lines, circumoral pallor
  • Follows pharyngitis (not skin infection)
  • Desquamation occurs during recovery

5. PANDAS (Pediatric Autoimmune Neuropsychiatric Disorders Associated with Streptococcal Infections)

  • OCD, tics, and other neuropsychiatric symptoms triggered by GAS infection
  • Mechanism: Antibody cross-reactivity with basal ganglia (similar to Sydenham's chorea)
  • Related to but distinct from Sydenham's chorea

Sources: Goldman-Cecil Medicine; Scott-Brown's Otorhinolaryngology Head & Neck Surgery; Kaplan & Sadock's Comprehensive Textbook of Psychiatry
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Case 12 - Complete Answers

(1) Causative Agent

Streptococcus pneumoniae (Pneumococcus)
Evidence from the case:
  • Alpha-hemolytic colonies with greenish discoloration on blood agar - the hallmark of S. pneumoniae (partial hemolysis converts hemoglobin to biliverdin causing the green color)
  • The Gram stain image shows lancet-shaped diplococci surrounded by a clear halo (capsule), typical of pneumococci
  • Elderly man (60 years) - high-risk age group
  • Community-acquired lobar pneumonia with pleuritic chest pain - classic pneumococcal presentation

(2) Provisional Clinical Diagnosis

Community-Acquired Pneumonia (CAP) - Lobar Pneumonia (Right Middle Lobe)
Specifically: Pneumococcal lobar pneumonia
Justification:
FindingSignificance
High-grade fever + productive coughAcute bacterial infection
Pleuritic chest painPleural involvement typical of lobar pneumonia
Shortness of breath (dyspnea)Ventilation-perfusion mismatch from consolidation
Decreased breath sounds + crepitations in right mid lobeLobar consolidation with exudate filling alveoli
Chest X-ray: consolidationClassic lobar pattern of pneumococcal pneumonia
Alpha-hemolytic (greenish) colonies on sputum cultureS. pneumoniae identification
"The classic presentation of pneumococcal pneumonia consists of a rigor followed by sustained fever, cough, dyspnea, and production of rusty or mucoid sputum... Pleuritic chest pain is common and may be severe. The typical radiographic appearance is a lobar or segmental consolidation." - Murray & Nadel's Textbook of Respiratory Medicine

(3) Morphology of the Organism (from the Gram stain image)

The image shows a Gram stain of sputum with the following features:

Microscopic Morphology of S. pneumoniae:

  • Shape: Oval to lancet-shaped (flame-shaped) cocci
  • Arrangement: Diplococci - arranged in pairs, with the broad ends facing each other and the pointed ends facing outward (like a flame or lancet)
  • Gram reaction: Gram-positive - stain deep purple/violet
  • Capsule: Surrounded by a clear unstained halo (polysaccharide capsule) - visible in the image as a pale zone around the cocci
  • Size: ~0.5-1.25 µm in diameter
  • In culture: May form short chains
  • In the image the large lavender/pink cells are red blood cells and white cells (PMNs) are also visible, typical of a purulent sputum specimen
  • The small dark purple paired cocci (diplococci) are the pneumococci

Cultural Morphology (on Blood Agar):

  • Alpha (α) hemolysis: Incomplete, greenish zone due to conversion of hemoglobin to biliverdin by hydrogen peroxide produced by the organism
  • Colony appearance: Small, dome-shaped, mucoid colonies (due to polysaccharide capsule), later become umbilicated (central depression) due to autolysis by pneumococcal autolysin

(4) Laboratory Tests Available for Diagnosis

A. Direct Microscopy

  • Gram stain of sputum: Gram-positive lancet-shaped diplococci surrounded by a clear capsular halo; look for >25 PMNs and <10 squamous epithelial cells per low-power field (a quality sputum sample)
  • Capsule staining: India ink / Quellung reaction

B. Culture (Gold Standard)

  • Sputum culture on Blood Agar: Alpha-hemolytic (greenish) colonies; quality sample required (Bartlett's criteria)
  • Blood culture: Two sets before antibiotics - positive in bacteremia; essential in severe/hospitalized CAP
  • Pleural fluid culture: If parapneumonic effusion present

C. Identification Tests for S. pneumoniae

TestPrincipleResult
Optochin sensitivity testEthylhydrocupreine HCl inhibits pneumococci; zone of inhibition ≥14 mmS. pneumoniae - SENSITIVE (distinguishes from viridans streptococci which are RESISTANT)
Bile solubility testBile salts (sodium deoxycholate) activate pneumococcal autolysin causing cell lysisS. pneumoniae - SOLUBLE (colonies dissolve); other alpha-hemolytic streptococci - not soluble
Quellung (Neufeld's) reactionType-specific antibodies cause capsule to swell and become refractilePositive for S. pneumoniae; used for serotyping
Inulin fermentationPneumococci ferment inulinPositive (distinguishes from other streptococci)
Catalase testAll streptococciCatalase-negative

D. Antigen Detection

  • Pneumococcal urinary antigen test (BinaxNOW): Detects pneumococcal C-polysaccharide antigen in urine; rapid, high specificity; recommended for severe CAP
  • Sputum antigen: Less commonly used

E. Molecular Tests

  • PCR: Multiplex respiratory PCR panels (FilmArray) - detect S. pneumoniae directly from respiratory samples; high sensitivity
  • 16S rRNA gene sequencing: For identification when culture fails

F. Serology

  • Anti-pneumococcal antibody titres: Mostly used for vaccine response assessment, not acute diagnosis

G. Imaging

  • Chest X-ray: Lobar/segmental consolidation (confirm pneumonia; define lobe involved)
  • CT chest: Better definition of consolidation, identify complications (empyema, abscess)

H. Other Supporting Tests

  • CBC: Leukocytosis with neutrophilia
  • CRP, procalcitonin: Elevated (procalcitonin useful to guide antibiotic duration)
  • LDH, ABG: Assess severity

(5) Two Differences Between Upper Respiratory Tract Infection (URTI) and Lower Respiratory Tract Infection (LRTI)

FeatureUpper RTI (URTI)Lower RTI (LRTI)
Anatomical siteInvolves structures above the larynx/glottis: nose, sinuses, pharynx, tonsils, larynx (e.g., common cold, sinusitis, pharyngitis, tonsillitis, otitis media, epiglottitis, croup)Involves structures below the larynx: trachea, bronchi, bronchioles, alveoli, lung parenchyma (e.g., bronchitis, bronchiolitis, pneumonia, lung abscess)
Severity and clinical featuresGenerally milder - runny nose, sore throat, nasal congestion, mild fever, hoarseness; rarely life-threatening; managed mostly as outpatient; no consolidation on CXRGenerally more severe - productive cough, high fever, pleuritic chest pain, dyspnea, reduced O₂ saturation, crepitations on auscultation; may require hospitalization; consolidation/infiltrates visible on chest X-ray
As in this case: The 60-year-old man has LRTI (pneumonia) - with features typical of lower tract disease: productive cough, pleuritic pain, crepitations in the right mid lobe, consolidation on CXR, and dyspnea. An URTI would have presented with sore throat, runny nose, and nasal congestion without chest findings.

Sources: Murray & Nadel's Textbook of Respiratory Medicine; Red Book 2021 - Report of the Committee on Infectious Diseases; Fishman's Pulmonary Diseases and Disorders
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