Notes on Chrons and ulcerative colities as per harrison.

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Inflammatory Bowel Disease (IBD): Crohn's Disease & Ulcerative Colitis

Harrison's Principles of Internal Medicine, 22nd Edition (2025) - Chapter 337 Authors: Sonia Friedman, Richard S. Blumberg

1. DEFINITION & OVERVIEW

IBD is a chronic idiopathic inflammatory disease of the GI tract. UC and CD are the two major types. Both involve dysregulation of the mucosal immune response, but they differ in location, depth of involvement, and disease pattern.

2. EPIDEMIOLOGY

  • Prevalence >0.3% in North America, Oceania, and most of Europe
  • Highest recorded prevalences: UC - 505/100,000 (Norway); CD - 322/100,000 (Germany)
  • USA: 2.39 million Americans diagnosed with IBD; UC up to 286/100,000; CD up to 319/100,000 (Canada)
  • Incidence rising rapidly in newly industrialized countries (Brazil: +11.1%/year for CD, +14.9%/year for UC; Taiwan: +4-4.8%/year)
  • Peak age: 2nd-4th decade; 78% of CD and 51% of UC cases peak at ages 20-29. A second rise occurs in the 7th-9th decades.
  • Gender: Not strongly gender-specific (female:male ratio 0.34-1.65 for CD; 0.51-1.58 for UC)
  • Pediatric IBD: ~20-25% of all IBD; ~5% are <10 years old
  • Very-early-onset IBD (VEO-IBD) (<6 years): colon-predominant, therapy-resistant, strong family history; up to 10% have rare single-gene Mendelian mutations
  • Higher prevalence in urban > rural, high > low socioeconomic class, and in White > Latinx/Black/Asian populations (though rising in all groups)
Key environmental risk factors (Table 337-1): diet (Westernization), microbiota changes, reduced sunlight/temperature exposure, improved hygiene (hygiene hypothesis)

3. PATHOLOGY

Ulcerative Colitis - Macroscopic Features

  • Confined to the colon and rectum
  • Disease begins in the rectum (always involved) and extends proximally in a continuous manner
  • Proctitis: disease limited to rectum
  • Left-sided colitis: up to splenic flexure
  • Pancolitis: entire colon
  • Mucosa is granular, erythematous, friable with loss of normal vascular pattern
  • Pseudopolyps (inflammatory polyps) result from mucosal regeneration
  • No skip lesions

Ulcerative Colitis - Microscopic Features

  • Inflammation confined to mucosa and submucosa (superficial)
  • Crypt abscesses: polymorphonuclear infiltration into crypts - pathognomonic
  • Cryptitis and crypt architectural distortion
  • Goblet cell depletion (mucin depletion)
  • Chronic changes: crypt atrophy, branching, basal plasmacytosis
  • No granulomas

Crohn's Disease - Macroscopic Features

  • Can affect any part of the GI tract from mouth to anus
  • Distribution:
    • Terminal ileum alone: ~30%
    • Colon alone: ~25%
    • Ileocolon: ~45%
    • Small bowel: any segment
  • Transmural inflammation (all layers of bowel wall)
  • Skip lesions (segmental involvement with normal intervening bowel)
  • Cobblestone mucosa: submucosal edema + linear ulcers creating cobblestone appearance
  • Creeping fat: mesenteric fat wrapping around the bowel wall
  • Strictures from fibrosis - can cause obstruction
  • Fistulas and sinuses - internal (enteroenteric, enterovesical, enterovaginal) and external (perianal, enterocutaneous)

Crohn's Disease - Microscopic Features

  • Transmural chronic inflammation
  • Non-caseating granulomas (in ~50% of cases) - pathognomonic but not always present
  • Lymphoid aggregates throughout all layers
  • Fissuring ulcers extending deep into submucosa/muscularis
  • Submucosal fibrosis

4. CLINICAL FEATURES

Ulcerative Colitis

FeatureDetails
Main symptomsBloody diarrhea, rectal urgency, tenesmus, crampy lower abdominal pain
Rectal bleedingAlmost universal
Systemic symptomsFever, weight loss, fatigue (with severe disease)
ProctitisConstipation may paradoxically occur
CourseRelapsing-remitting in most; continuous in ~10%
Disease severity classification (Mayo Score / Truelove-Witts):
  • Mild: <4 stools/day, minimal bleeding, no systemic signs, ESR <20
  • Moderate: 4-6 stools/day, moderate bleeding, mild systemic signs
  • Severe: >6 bloody stools/day, fever >37.5°C, HR >90, Hb <10.5 g/dL, ESR >30
  • Fulminant/toxic megacolon: >10 bloody stools/day, fever, HR >90, abdominal distension, colonic dilation >6 cm on X-ray

Crohn's Disease

FeatureDetails
Main symptomsDiarrhea (often non-bloody), RLQ pain, weight loss
Perianal diseaseFistulas, abscesses, skin tags, fissures
Obstructive symptomsNausea, vomiting, distension (from strictures)
MalabsorptionB12 deficiency (terminal ileum), fat-soluble vitamins, iron deficiency
MassRLQ mass (inflamed, matted loops of bowel)
FeverLow-grade; high if abscess present
Disease behavior (Montreal Classification):
  • B1 - Inflammatory (non-stricturing, non-penetrating)
  • B2 - Stricturing
  • B3 - Penetrating (fistulizing)
  • +p - Perianal modifier
Disease location (Montreal):
  • L1 - Ileal
  • L2 - Colonic
  • L3 - Ileocolonic
  • L4 - Upper GI (modifier)

5. EXTRAINTESTINAL MANIFESTATIONS

Both UC and CD share similar extraintestinal manifestations (EIMs):
Parallel disease activity (flare with bowel activity):
  • Peripheral arthritis (large joints - knees, ankles, elbows)
  • Erythema nodosum (tender, red nodules on shins)
  • Episcleritis
Independent of disease activity:
  • Axial arthropathy / ankylosing spondylitis (HLA-B27 associated)
  • Pyoderma gangrenosum (painful, undermined ulcer)
  • Uveitis / iritis (requires urgent ophthalmology)
  • Primary sclerosing cholangitis (PSC) - more common in UC; associated with high risk of cholangiocarcinoma and colorectal cancer
Metabolic complications:
  • Oxalate kidney stones (fat malabsorption in CD → excess enteric oxalate absorption)
  • Uric acid stones (from dehydration/chronic diarrhea)
  • Gallstones (bile acid malabsorption from terminal ileal CD)
  • Osteoporosis (from corticosteroids, malabsorption, chronic inflammation)
  • Amyloidosis (rare, with chronic active disease)

6. DIAGNOSIS & INVESTIGATIONS

Laboratory

  • CBC: anemia (iron deficiency, B12/folate, anemia of chronic disease), leukocytosis, thrombocytosis
  • CRP and ESR: elevated with active disease; useful for monitoring
  • Fecal calprotectin: sensitive marker of intestinal inflammation; useful for differentiating IBD from IBS and for monitoring mucosal healing
  • ANCA (pANCA): positive in ~60-70% UC; ASCA (anti-Saccharomyces): positive in ~60-70% CD - useful when diagnosis is uncertain but not definitive
  • Stool cultures, C. difficile toxin: to rule out infection

Endoscopy

  • Colonoscopy with ileoscopy: gold standard; allows biopsy, assessment of extent and severity
  • UC: continuous mucosal inflammation from rectum; loss of vascular pattern, granularity, ulceration, pseudopolyps
  • CD: aphthous ulcers (earliest lesion), linear ulcers, cobblestoning, strictures, skip lesions

Imaging

  • CT enterography / MR enterography: preferred for small bowel CD assessment; evaluates transmural involvement, strictures, fistulas, abscesses
  • MRI pelvis (Fig. 337-11): gold standard for perianal CD - evaluates fistula anatomy (intersphincteric/transsphincteric), abscesses
  • CT/MRI abdomen: for complications (abscess, obstruction, perforation)
  • Small bowel follow-through (SBFT): string sign of Kantor (narrow terminal ileum in CD stricture)
  • Capsule endoscopy: for suspected small bowel CD when other tests negative (contraindicated if stricture suspected)

7. DISEASES THAT MIMIC IBD (Table 337-6)

InfectiousNon-infectious
Salmonella, Shigella, Campylobacter, YersiniaIschemic colitis, diverticulitis
C. difficile, E. coli (ETEC/EHEC)Collagenous/lymphocytic colitis
Tuberculosis, M. aviumAppendicitis, radiation colitis
Amebiasis, StrongyloidesNSAID colitis, immune checkpoint inhibitor colitis
CMV, HSV, HIVLymphoma, carcinoma
Gonorrhea, ChlamydiaSolitary rectal ulcer, eosinophilic gastroenteritis

8. MEDICAL TREATMENT

Step 1: Aminosalicylates (5-ASA)

  • Sulfasalazine (5-ASA + sulfapyridine carrier): effective for mild-moderate UC; less effective for CD
  • Mesalamine (oral, enema, suppository forms): first-line for mild-moderate UC
  • Mechanism: inhibit prostaglandin synthesis, scavenge free radicals, inhibit NF-kB
  • Useful for maintaining remission in UC
  • Limited efficacy in CD (not recommended for small bowel CD)
  • Side effects of sulfasalazine: nausea, headache, oligospermia (reversible), hemolytic anemia, hypersensitivity - due to sulfapyridine moiety

Step 2: Glucocorticoids

  • Prednisone 40-60 mg/day for moderate-severe active disease
  • Budesonide: high first-pass metabolism; effective for mild-moderate ileocecal CD with fewer systemic side effects
  • IV hydrocortisone/methylprednisolone: for severe/hospitalized disease
  • Not for maintenance - cannot use long-term (osteoporosis, adrenal suppression, cushingoid features)
  • ~50% of patients who respond initially become steroid-dependent or steroid-refractory

Step 3: Immunomodulators

Thiopurines:
  • Azathioprine (AZA) 2-2.5 mg/kg/day or 6-Mercaptopurine (6-MP) 1-1.5 mg/kg/day
  • Prodrug → 6-TGN (active) via TPMT enzyme
  • Check TPMT activity before starting (low/absent TPMT → risk of severe myelosuppression)
  • Slow onset (3-6 months); used for steroid-sparing and maintenance
  • Side effects: nausea, hepatitis, pancreatitis, bone marrow suppression, increased risk of lymphoma (especially with EBV), non-melanoma skin cancer
  • Monitor CBC regularly
Methotrexate (MTX):
  • 25 mg IM/SC weekly for induction; 15 mg/week for maintenance of CD
  • Effective in CD; not proven effective in UC
  • Supplement with folic acid
  • Side effects: hepatotoxicity (cirrhosis with long-term use), pneumonitis, teratogenicity (Category X - stop 3 months before conception)
Cyclosporine (CSA):
  • 2-4 mg/kg/day IV; salvage therapy for acute severe UC (steroid-refractory)
  • Rapid onset; bridge to thiopurine maintenance
  • Side effects: nephrotoxicity, hypertension, neurotoxicity, opportunistic infections
  • Tacrolimus: similar mechanism, 100x more potent, better oral absorption (useful in proximal CD); use decreasing with biologic expansion

Step 4: Biologic Therapies

Anti-TNF Agents:
DrugTypeRouteUse
InfliximabChimeric IgG1 anti-TNFIVCD + UC (moderate-severe)
AdalimumabFully human IgG1 anti-TNFSCCD + UC
Certolizumab pegolPegylated anti-TNF FabSC monthlyCD only
GolimumabFully human anti-TNFSCUC only
  • Combination therapy (infliximab + azathioprine) more effective than either alone in moderate-severe CD and UC
  • Infliximab dosing: 5 mg/kg IV at 0, 2, 6 weeks (induction), then every 8 weeks (maintenance)
  • Hospitalized acute severe UC: intensive (accelerated) infliximab dosing due to protein-losing enteropathy lowering drug levels
  • ADA: 40 mg SC every other week; dose escalation to weekly improves remission rates
  • Certolizumab pegol crosses placenta by passive diffusion only - minimal fetal exposure
Anti-integrin:
  • Vedolizumab (anti-α4β7 integrin): gut-selective; blocks lymphocyte trafficking to intestinal mucosa; approved for moderate-severe CD and UC; favorable safety profile (no systemic immunosuppression)
Anti-IL-12/23:
  • Ustekinumab: anti-p40 subunit shared by IL-12 and IL-23; IV loading dose then SC maintenance; effective for moderate-severe CD and UC
Small Molecule Therapies (JAK Inhibitors):
  • Tofacitinib: JAK1/3 inhibitor; oral; approved for moderate-severe UC
  • Upadacitinib: JAK1 inhibitor; oral; approved for CD and UC
  • Ozanimod: S1P receptor modulator; oral; for UC
  • Contraindicated in pregnancy (tofacitinib, upadacitinib) - teratogenic; washout 4 weeks before conception
Current treatment philosophy: Treat early, treat aggressively, check drug levels (therapeutic drug monitoring), use combination therapy in appropriate patients, aim for deep remission (endoscopic + histologic remission)

9. SURGICAL MANAGEMENT

Ulcerative Colitis

  • Surgery is curative in UC (unlike CD)
  • Indications: medically refractory disease, fulminant colitis/toxic megacolon, perforation, severe hemorrhage, dysplasia/carcinoma, growth retardation in children
  • Procedure of choice: Total proctocolectomy with ileal pouch-anal anastomosis (IPAA) ("J-pouch")
  • Complications of IPAA: pouchitis (most common long-term complication; treated with metronidazole or ciprofloxacin), pouch failure (~10%)
  • Three-stage surgery: (1) subtotal colectomy + ileostomy, (2) IPAA creation, (3) ileostomy reversal - used in acute/severe presentations

Crohn's Disease

  • Surgery is not curative - disease recurs at anastomosis; lifetime risk of surgery ~80%
  • Indications: obstruction (stricture), fistula/abscess, perforation, refractory disease, growth failure
  • Strictureplasty: for short strictures - preserves bowel length
  • Segmental resection: for longer strictures or fistulas
  • Perianal disease: seton placement for high fistulas; anti-TNF therapy preferred over surgery
  • Post-surgical recurrence prophylaxis: metronidazole post-op, then immunomodulator or anti-TNF

10. CANCER SURVEILLANCE IN IBD

Ulcerative Colitis

  • Colorectal cancer (CRC) risk: 1.5-2x higher than general population
  • Risk increases with duration and extent of disease
  • Historical risk: ~2% at 10 years, 8% at 20 years, 18% at 30 years - decreasing with better inflammation control
  • Surveillance colonoscopy: annual or biennial after 8-10 years of extensive colitis (>1/3 of colon), or after 12-15 years of proctosigmoiditis
  • Chromoendoscopy recommended by international guidelines for dysplasia surveillance (enhances mucosal surface visualization)
  • PSC + UC: CRC risk dramatically higher; annual colonoscopy from time of PSC diagnosis

Crohn's Disease

  • Similar CRC risk if colon involved
  • Small bowel adenocarcinoma: rare but increased risk (especially in areas of long-standing CD)
  • Lymphoma risk slightly increased (may be partly from thiopurine use)

11. IBD IN SPECIAL SITUATIONS

Pregnancy

  • Active IBD increases risk of premature birth, low birth weight, IUGR - disease control is paramount
  • Safe in pregnancy: 5-ASA, corticosteroids (short-term), azathioprine/6-MP (generally considered safe), anti-TNF agents (no increased risk of stillbirth/miscarriage in large prospective studies)
  • IgG1 biologics (infliximab, ADA, vedolizumab, ustekinumab) actively transported across placenta in late 2nd/3rd trimester; infant serum levels persist up to 1 year - avoid live vaccines until 12 months
  • Certolizumab pegol: crosses placenta by passive diffusion only; minimal infant levels - preferred biologic if biologic needed in 3rd trimester
  • Avoid: MTX (teratogenic, stop 3 months before conception), tofacitinib, upadacitinib (animal teratogenicity data; 4-week washout)
  • Do not switch drugs during pregnancy unless medically required
  • Surgery (colectomy/IPAA): only for emergencies; total colectomy + ileostomy carries 50% risk of spontaneous abortion; if surgery needed, best in 2nd trimester

12. KEY DIFFERENCES: UC vs. CD SUMMARY TABLE

FeatureUlcerative ColitisCrohn's Disease
LocationColon and rectum onlyAny GI tract (mouth to anus)
DistributionContinuous, rectum always involvedSkip lesions
DepthMucosal/submucosalTransmural
Rectal bleedingVery commonLess common
Perianal diseaseRareCommon (fistulas, abscesses)
GranulomasAbsentPresent (~50%)
FistulasAbsentCharacteristic
CobblestoningAbsentPresent
String signAbsentPresent (terminal ileum)
Crypt abscessesCharacteristicCan occur
SurgeryCurative (colectomy)Not curative; recurs
ANCA (pANCA)60-70% positiveUsually negative
ASCAUsually negative60-70% positive
SmokingProtectiveRisk factor
5-ASA efficacyYesLimited (not small bowel)
CRC riskIncreased with pancolitisIncreased if colon involved

Source: Harrison's Principles of Internal Medicine, 22nd Edition (2025), Chapter 337 - Inflammatory Bowel Disease. Authors: Sonia Friedman, Richard S. Blumberg.
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