Carbohydrates detailed comprehensive notes

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glycolysis pathway diagram biochemistry

A detailed biochemical flowchart illustrating the shikimate pathway and its role in the biosynthesis of aromatic amino acids. The diagram initiates with phosphoenol pyruvate (from the glycolysis pathway) and erythrose-4-phosphate (from the pentose phosphate pathway). These precursors undergo a series of enzymatic steps involving 3-deoxy-d-arabino-heptulosonate-7-phosphate synthase, 3-dehydroquinate synthase, 3-dehydroquinate dehydrogenase, shikimate-5 dehydrogenase, and shikimate kinase to produce shikimic acid 3-phosphate. A key regulatory point is highlighted where the herbicide glyphosate inhibits the enzyme 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS), indicated by a 'STOP' sign. The pathway continues to produce chorismate, which serves as the central branch point for the 'Aromatic amino acids biosynthesis' section. This downstream segment depicts the enzymatic conversion of chorismate into the essential aromatic amino acids: Tryptophan, Phenylalanine, and Tyrosine, including their chemical structures. The diagram serves as an educational tool for understanding metabolic biochemistry, enzyme inhibition, and the mechanism of action of glyphosate in preventing the synthesis of essential amino acids required for plant and microbial life.

A detailed biochemical flowchart illustrating the shikimate pathway and its role in the biosynthesis of aromatic amino acids. The diagram initiates with phosphoenol pyruvate (from the glycolysis pathway) and erythrose-4-phosphate (from the pentose phosphate pathway). These precursors undergo a series of enzymatic steps involving 3-deoxy-d-arabino-heptulosonate-7-phosphate synthase, 3-dehydroquinate synthase, 3-dehydroquinate dehydrogenase, shikimate-5 dehydrogenase, and shikimate kinase to produce shikimic acid 3-phosphate. A key regulatory point is highlighted where the herbicide glyphosate inhibits the enzyme 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS), indicated by a 'STOP' sign. The pathway continues to produce chorismate, which serves as the central branch point for the 'Aromatic amino acids biosynthesis' section. This downstream segment depicts the enzymatic conversion of chorismate into the essential aromatic amino acids: Tryptophan, Phenylalanine, and Tyrosine, including their chemical structures. The diagram serves as an educational tool for understanding metabolic biochemistry, enzyme inhibition, and the mechanism of action of glyphosate in preventing the synthesis of essential amino acids required for plant and microbial life.

This pathophysiology diagram illustrates the glycolysis pathway as a therapeutic target for anti-inflammatory strategies. The metabolic flowchart depicts the sequence from glucose entry via the Glut1 transporter through various intermediates including glucose-6-phosphate, fructose-1,6-bisphosphate, and glyceraldehyde-3-phosphate, culminating in pyruvate entry into the Krebs cycle within the mitochondria. Key regulatory interventions are highlighted: 2-DG (2-deoxyglucose) inhibiting hexokinase to treat inflammatory diseases like SLE, RA, and Guillain-Barré; Heptelidic Acid inhibiting GAPDH for neuroprotective and anti-inflammatory effects; and TEPP-46 promoting the tetramerization of Pyruvate Kinase M2 to inhibit pro-inflammatory markers in sepsis, EAE, and AKI. The diagram identifies specific immune cell types affected by these interventions, such as Th1, Th17, macrophages, and NK cells. The educational focus is on how modulating metabolic enzymes can alter immune cell phenotype and manage systemic inflammatory conditions.

This pathophysiology diagram illustrates the glycolysis pathway as a therapeutic target for anti-inflammatory strategies. The metabolic flowchart depicts the sequence from glucose entry via the Glut1 transporter through various intermediates including glucose-6-phosphate, fructose-1,6-bisphosphate, and glyceraldehyde-3-phosphate, culminating in pyruvate entry into the Krebs cycle within the mitochondria. Key regulatory interventions are highlighted: 2-DG (2-deoxyglucose) inhibiting hexokinase to treat inflammatory diseases like SLE, RA, and Guillain-Barré; Heptelidic Acid inhibiting GAPDH for neuroprotective and anti-inflammatory effects; and TEPP-46 promoting the tetramerization of Pyruvate Kinase M2 to inhibit pro-inflammatory markers in sepsis, EAE, and AKI. The diagram identifies specific immune cell types affected by these interventions, such as Th1, Th17, macrophages, and NK cells. The educational focus is on how modulating metabolic enzymes can alter immune cell phenotype and manage systemic inflammatory conditions.

This pathophysiology diagram illustrates the metabolic reprogramming of a cell, specifically focusing on the Warburg effect and altered glucose metabolism common in cancer biology. The diagram depicts the plasma membrane featuring multiple glucose transporters, including SGLT1-2 (sodium-coupled), GLUT1, GLUT4, and GLUT8, which facilitate increased glucose uptake. The primary glycolytic pathway is shown progressing from Glucose to Glu-6-P (via HK), through Fru-6-P, Fru-1,6-P, GA3P, and PEP, ultimately leading to Pyruvate and Lactate (via LDHA). Parallel to glycolysis, the Pentose Phosphate Pathway (PPP) is detailed, converting G6P to Ribose-5-P while generating NADPH for redox homeostasis (GSH/GSSG balance) to mitigate ROS. Key regulatory mediators are highlighted: HIF-1 and MYC stimulate glucose transporters and glycolytic enzymes; TGFB and FGF influence PKM2 and LDHA activity; p53 regulates the process through TIGAR to inhibit Fru-2,6-P. The visual summarizes how oncogenic signaling (including KRAS) drives aerobic glycolysis and pentose production to support rapid cell proliferation and antioxidant defense.

This pathophysiology diagram illustrates the metabolic reprogramming of a cell, specifically focusing on the Warburg effect and altered glucose metabolism common in cancer biology. The diagram depicts the plasma membrane featuring multiple glucose transporters, including SGLT1-2 (sodium-coupled), GLUT1, GLUT4, and GLUT8, which facilitate increased glucose uptake. The primary glycolytic pathway is shown progressing from Glucose to Glu-6-P (via HK), through Fru-6-P, Fru-1,6-P, GA3P, and PEP, ultimately leading to Pyruvate and Lactate (via LDHA). Parallel to glycolysis, the Pentose Phosphate Pathway (PPP) is detailed, converting G6P to Ribose-5-P while generating NADPH for redox homeostasis (GSH/GSSG balance) to mitigate ROS. Key regulatory mediators are highlighted: HIF-1 and MYC stimulate glucose transporters and glycolytic enzymes; TGFB and FGF influence PKM2 and LDHA activity; p53 regulates the process through TIGAR to inhibit Fru-2,6-P. The visual summarizes how oncogenic signaling (including KRAS) drives aerobic glycolysis and pentose production to support rapid cell proliferation and antioxidant defense.

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carbohydrate structure monosaccharide glucose ring form

This diagnostic image displays a 1H Proton Nuclear Magnetic Resonance (NMR) spectrum used in the structural characterization of an exopolysaccharide (EPS) derived from Lacticaseibacillus plantarum. The spectrum provides biochemical data regarding the molecular structure of the carbohydrate polymer, which has clinical significance in probiotic and gut microbiome research. The horizontal axis (f1) represents chemical shifts in parts per million (ppm), ranging from approximately 3.2 to 5.5 ppm. A dominant, high-intensity peak is visible at 4.7 ppm, characteristic of a solvent peak (D2O). The anomeric region, crucial for identifying sugar residues, is expanded in an upper-left inset covering 4.9 to 5.3 ppm. This inset reveals specific resonance signals at 5.22, 5.06, 5.01, and 4.97 ppm, corresponding to anomeric protons of α-d-glucose, α-d-mannose, and β-d-galactose. The region between 3.4 and 4.2 ppm shows a complex cluster of signals representing the ring protons (H2–H6) of the monosaccharide units. This spectral fingerprint is used to determine the homogeneity and repeating unit sequence of the EPS, influencing its potential immunomodulatory and prebiotic medical applications.

This diagnostic image displays a 1H Proton Nuclear Magnetic Resonance (NMR) spectrum used in the structural characterization of an exopolysaccharide (EPS) derived from Lacticaseibacillus plantarum. The spectrum provides biochemical data regarding the molecular structure of the carbohydrate polymer, which has clinical significance in probiotic and gut microbiome research. The horizontal axis (f1) represents chemical shifts in parts per million (ppm), ranging from approximately 3.2 to 5.5 ppm. A dominant, high-intensity peak is visible at 4.7 ppm, characteristic of a solvent peak (D2O). The anomeric region, crucial for identifying sugar residues, is expanded in an upper-left inset covering 4.9 to 5.3 ppm. This inset reveals specific resonance signals at 5.22, 5.06, 5.01, and 4.97 ppm, corresponding to anomeric protons of α-d-glucose, α-d-mannose, and β-d-galactose. The region between 3.4 and 4.2 ppm shows a complex cluster of signals representing the ring protons (H2–H6) of the monosaccharide units. This spectral fingerprint is used to determine the homogeneity and repeating unit sequence of the EPS, influencing its potential immunomodulatory and prebiotic medical applications.

High-Performance Liquid Chromatography (HPLC) chromatograms illustrating the monosaccharide composition analysis of a carbohydrate-based sample. Panel (a) shows the reference standard profile with eight labeled peaks corresponding to specific monosaccharides and their retention times: 1 (PMP), 2 (d-mannose), 3 (d-rhamnose), 4 (glucuronic acid), 5 (galacturonic acid), 6 (d-glucose), 7 (d-galactose), and 8 (d-arabinose). The peaks are distributed across a 90-minute timeframe with varying intensities (mAU). Panel (b) displays the analysis of the GBSPII-1 sample, characterized by a dominant, high-intensity peak (peak 6) at approximately 59 minutes, identifying d-glucose as the primary constituent. Smaller peaks corresponding to mannose, rhamnose, and uronic acids are also visible, indicating a complex but glucose-rich polysaccharide structure. This comparative analytical visualization is used in biochemistry and pharmacology to determine the chemical fingerprint and purity of bioactive carbohydrate compounds.

High-Performance Liquid Chromatography (HPLC) chromatograms illustrating the monosaccharide composition analysis of a carbohydrate-based sample. Panel (a) shows the reference standard profile with eight labeled peaks corresponding to specific monosaccharides and their retention times: 1 (PMP), 2 (d-mannose), 3 (d-rhamnose), 4 (glucuronic acid), 5 (galacturonic acid), 6 (d-glucose), 7 (d-galactose), and 8 (d-arabinose). The peaks are distributed across a 90-minute timeframe with varying intensities (mAU). Panel (b) displays the analysis of the GBSPII-1 sample, characterized by a dominant, high-intensity peak (peak 6) at approximately 59 minutes, identifying d-glucose as the primary constituent. Smaller peaks corresponding to mannose, rhamnose, and uronic acids are also visible, indicating a complex but glucose-rich polysaccharide structure. This comparative analytical visualization is used in biochemistry and pharmacology to determine the chemical fingerprint and purity of bioactive carbohydrate compounds.

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Carbohydrates - Comprehensive Medical Biochemistry Notes

Sources: Biochemistry 8th ed. Lippincott Illustrated Reviews; Basic Medical Biochemistry 6e; Medical Physiology (Boron & Boulpaep); Guyton & Hall Textbook of Medical Physiology

1. INTRODUCTION & OVERVIEW

Carbohydrates are the most abundant organic molecules in nature. They serve four primary functions:
  1. Energy source - glucose is the primary fuel for the brain and RBCs; 1 g CHO yields ~4 kcal
  2. Energy storage - glycogen in liver and muscle
  3. Structural components - cell walls, connective tissue (glycoproteins, proteoglycans)
  4. Cell signaling & recognition - blood group antigens, receptor ligands
A constant blood glucose is an absolute requirement for life. Glucose is the obligatory energy source for the brain and the only fuel for cells with few/no mitochondria (mature RBCs, cells of the renal medulla, lens, cornea, testes).

2. CLASSIFICATION OF CARBOHYDRATES

A. Monosaccharides (Simple Sugars)

Single sugar units that cannot be hydrolyzed further.
FeatureDetails
General formula(CH₂O)n
Classification by carbon numberTrioses (3C), tetroses (4C), pentoses (5C), hexoses (6C), heptoses (7C)
Classification by functional groupAldoses (aldehyde group) vs. Ketoses (keto group)
Most important hexoseD-Glucose (aldohexose)
Clinically important monosaccharides:
SugarTypeSignificance
GlucoseAldohexosePrimary blood sugar, brain fuel
FructoseKetohexoseFruit sugar, very sweet, liver metabolism
GalactoseAldohexoseMilk sugar component, galactosemia if enzyme deficient
RiboseAldopentoseComponent of RNA, ATP, NADH
DeoxyribosePentoseComponent of DNA
MannoseAldohexoseGlycoprotein component

B. Structural Properties of Monosaccharides

D vs L designation: Based on the orientation of the -OH group on the carbon farthest from the carbonyl group, compared to glyceraldehyde. Most naturally occurring sugars are D-form.
Alpha (α) and Beta (β) anomers:
  • When monosaccharides cyclize (forming a ring via hemiacetal or hemiketal bond), the resulting -OH at carbon 1 can be in two positions
  • α-anomer: -OH is on the same side as the ring oxygen (axial in glucose)
  • β-anomer: -OH is opposite the ring oxygen (equatorial in glucose - more stable)
  • This is important because α-1,4 bonds form starch/glycogen (digestible), while β-1,4 bonds form cellulose (non-digestible)
Epimers: Sugars differing in configuration at only one carbon. Glucose and galactose are C4 epimers; glucose and mannose are C2 epimers.

C. Disaccharides

Formed by glycosidic linkages between two monosaccharides.
DisaccharideComponentsLinkageSourceEnzyme to digest
Sucrose (table sugar)Glucose + Fructoseα-1,β-2Sugar cane/beetSucrase
Lactose (milk sugar)Galactose + Glucoseβ-1,4MilkLactase
MaltoseGlucose + Glucoseα-1,4Starch hydrolysisMaltase
TrehaloseGlucose + Glucoseα-1,α-1Insect hemolymphTrehalase
CellobioseGlucose + Glucoseβ-1,4Cellulose hydrolysis(not human)
  • Sucrose and maltose together represent 30-40% of dietary carbohydrates
  • Reducing sugars have a free anomeric carbon (can reduce cupric ions) - glucose, fructose, galactose, maltose, lactose are reducing; sucrose is non-reducing

D. Oligosaccharides

Short chains of 3-10 monosaccharide units linked by glycosidic bonds.
  • Found attached to proteins (glycoproteins) and lipids (glycolipids)
  • Important for cell-cell recognition

E. Polysaccharides (Glycans)

Long chains of monosaccharide units.
PolysaccharideCompositionLinkageFunction
Starch (Amylose)Glucoseα-1,4 onlyPlant energy storage (straight chain)
Starch (Amylopectin)Glucoseα-1,4 + α-1,6 (branch)Plant energy storage (branched)
GlycogenGlucoseα-1,4 + α-1,6 (more branches)Animal energy storage
CelluloseGlucoseβ-1,4Plant cell wall; dietary fiber
ChitinN-acetylglucosamineβ-1,4Arthropod exoskeleton
Hyaluronic acidGlcUA + GlcNAcβ-1,3 + β-1,4Connective tissue
HeparinGlcUA + GlcNSAnticoagulant
  • Amylose is a straight-chain glucose polymer with α-1,4 linkages
  • Amylopectin is a massive branched polymer (up to 1 million glucose residues); α-1,6 linkages at branch points
  • Glycogen - "animal starch" - more highly branched than amylopectin; branches every ~8-12 residues (vs every ~25-30 in amylopectin)
  • Starch accounts for 45-60% of dietary carbohydrate in Western diets

3. DIETARY CARBOHYDRATE DIGESTION

Source: Medical Physiology, Boron & Boulpaep

Phases of Digestion

Dietary carbohydrates must be hydrolyzed to monosaccharides before absorption. The small intestine can absorb only monomers; the colon cannot absorb monosaccharides.

Phase 1: Salivary Digestion

  • Salivary α-amylase (ptyalin) begins starch hydrolysis in the mouth
  • Cleaves α-1,4 bonds at random internal points → oligosaccharides (maltose, maltotriose, α-limit dextrins)
  • Very limited action (food is swallowed quickly); inactivated by gastric acid

Phase 2: Pancreatic Digestion

  • Pancreatic α-amylase is the major amylase
  • Secreted into duodenum; much more active than salivary amylase
  • Produces maltose, maltotriose, and α-limit dextrins (oligosaccharides containing α-1,6 branches)
  • Cannot cleave α-1,6 bonds or terminal α-1,4 bonds

Phase 3: Brush Border (Luminal Surface) Digestion

Enzymes embedded in the brush border membrane of enterocytes:
EnzymeSubstrateProducts
Sucrase-isomaltaseSucrose, isomaltose (α-limit dextrins)Glucose + Fructose
Lactase (LPH)LactoseGalactose + Glucose
Maltase-glucoamylaseMaltose, maltotrioseGlucose + Glucose
TrehalaseTrehaloseGlucose + Glucose
Key: Lactase is the enzyme most commonly deficient in adults worldwide, leading to lactose intolerance.

4. CARBOHYDRATE ABSORPTION

Source: Medical Physiology; Lippincott Illustrated Reviews

Glucose and Galactose: Secondary Active Transport

  • Transported via SGLT-1 (Sodium-Glucose Linked Transporter 1) on the apical membrane
  • Na⁺ gradient (maintained by Na⁺/K⁺-ATPase on basolateral side) drives glucose/galactose uptake against their concentration gradients
  • Exits enterocytes via GLUT-2 on the basolateral membrane into the portal blood

Fructose: Facilitated Diffusion

  • Transported via GLUT-5 on the apical membrane
  • Exits via GLUT-2 on the basolateral membrane
  • Passive, no energy or Na⁺ required; slower than glucose/galactose transport

Glucose Transporters (GLUTs) - Key Summary

TransporterTissueKey Feature
GLUT-1Most tissues (RBCs, brain, endothelium)High affinity, low Km; constitutive glucose uptake
GLUT-2Liver, kidney, pancreatic β cells, intestine (basolateral)Low affinity, high Km; glucose sensor
GLUT-3Brain neuronsHigh affinity; ensures brain glucose supply
GLUT-4Skeletal muscle, adipose tissueInsulin-responsive; recruited to membrane by insulin
GLUT-5Small intestineFructose transporter
Insulin mechanism: Insulin causes GLUT-4 vesicles (stored intracellularly) to fuse with the plasma membrane, dramatically increasing glucose uptake in muscle and fat. This is the basis of insulin resistance in T2DM.

5. GLYCOLYSIS

Source: Biochemistry 8th ed. Lippincott Illustrated Reviews, p. 294-310
Glycolysis is the universal pathway for glucose catabolism. It is the hub of carbohydrate metabolism because virtually all sugars can be converted to glucose.
Location: Cytosol
Net equation (aerobic): Glucose + 2 NAD⁺ + 2 ADP + 2 Pi → 2 Pyruvate + 2 NADH + 2 ATP + 2 H₂O

Overview

Aerobic glycolysis and anaerobic glycolysis pathways showing all intermediates from glucose to pyruvate/lactate
Figure: A = Metabolic context. B = Aerobic glycolysis (glucose → pyruvate → oxidative phosphorylation). C = Anaerobic glycolysis (glucose → lactate). Source: Lippincott Illustrated Reviews Biochemistry 8e

Two Phases

Phase 1 - Energy Investment Phase (Steps 1-5): 2 ATP consumed; glucose is converted to two triose phosphates.
Phase 2 - Energy Generation Phase (Steps 6-10): 4 ATP + 2 NADH produced; two triose phosphates are converted to pyruvate.
Net yield per glucose: 2 ATP + 2 NADH + 2 pyruvate

The 10 Reactions of Glycolysis

StepReactionEnzymeKey Points
1Glucose → Glucose-6-PHexokinase (HK I-III) or Glucokinase (HK IV)Irreversible; traps glucose in cell; HK inhibited by G6P; glucokinase is the liver/β-cell glucose sensor
2Glucose-6-P → Fructose-6-PPhosphoglucose isomeraseReversible; aldose-ketose isomerization
3Fructose-6-P → Fructose-1,6-bisPPhosphofructokinase-1 (PFK-1)Rate-limiting, committed step; irreversible; activated by AMP/ADP; inhibited by ATP, citrate
4Fructose-1,6-bisP → DHAP + G3PAldolaseReversible; cleaves hexose into two trioses
5DHAP → Glyceraldehyde-3-PTriose phosphate isomeraseRapid equilibrium; only G3P continues
6G3P → 1,3-BisphosphoglycerateG3P dehydrogenaseNAD⁺ → NADH; this is the key oxidation step
71,3-BPG → 3-PhosphoglyceratePhosphoglycerate kinaseFirst substrate-level phosphorylation; 2 ATP/glucose
83-PG → 2-PhosphoglyceratePhosphoglycerate mutaseReversible
92-PG → Phosphoenolpyruvate (PEP)EnolaseDehydration; inhibited by fluoride (used in F⁻ blood tubes)
10PEP → PyruvatePyruvate kinase (PK)Second substrate-level phosphorylation, 2 ATP/glucose; irreversible; activated by F-1,6-bisP (feedforward); inhibited by ATP, alanine

Regulation of Glycolysis - Three Key Enzymes

  1. Hexokinase (I-III): Inhibited by product glucose-6-phosphate (feedback)
  2. PFK-1 (main regulatory enzyme):
    • Activated by: AMP, ADP, Pi, fructose-2,6-bisphosphate (F-2,6-bisP) - most potent activator
    • Inhibited by: ATP (high energy = stop glycolysis), citrate
  3. Pyruvate kinase:
    • Activated by: fructose-1,6-bisphosphate (feedforward activation)
    • Inhibited by: ATP, alanine; phosphorylated (inactivated) by glucagon-triggered PKA in the liver
Fructose-2,6-bisphosphate (F-2,6-bisP): Made by PFK-2 (a bifunctional enzyme). In the fed state (insulin), PFK-2 is active → F-2,6-bisP high → PFK-1 activated → glycolysis activated. In fasting (glucagon), PKA phosphorylates PFK-2, activating its phosphatase domain → F-2,6-bisP falls → glycolysis slows.

Aerobic vs. Anaerobic Glycolysis

FeatureAerobicAnaerobic
O₂ requiredYes (to reoxidize NADH)No
End productPyruvate → Acetyl-CoA → TCALactate
Net ATP/glucose30-32 ATP (total)2 ATP
NADH fateEnters ETCOxidized by lactate dehydrogenase
TissuesAll aerobic tissuesRBCs, renal medulla, exercising muscle, hypoxic tissue
Lactate dehydrogenase (LDH): Pyruvate + NADH + H⁺ → Lactate + NAD⁺
  • Regenerates NAD⁺ for continued glycolysis
  • Lactate is not a dead end - it is taken up by the liver and heart and reconverted to pyruvate

Fate of Pyruvate

  1. Aerobic (mitochondria): Pyruvate → Acetyl-CoA (by pyruvate dehydrogenase complex, PDC)
  2. Anaerobic: Pyruvate → Lactate (by LDH)
  3. Gluconeogenesis: Pyruvate → OAA → Glucose (in liver)
  4. Transamination: Pyruvate → Alanine
  5. Carboxylation: Pyruvate → OAA (by pyruvate carboxylase; requires biotin)

6. PYRUVATE DEHYDROGENASE COMPLEX (PDC)

Location: Mitochondrial matrix
Reaction: Pyruvate + CoA + NAD⁺ → Acetyl-CoA + CO₂ + NADH
Irreversible - commits pyruvate to oxidative catabolism or fatty acid synthesis
Cofactors required (5 coenzymes - all B vitamins):
  • TPP (thiamine pyrophosphate - B1)
  • Lipoic acid
  • FAD (B2/riboflavin)
  • NAD⁺ (B3/niacin)
  • CoA (pantothenate/B5)
Regulation:
  • Activated by: NAD⁺, CoA, AMP, Ca²⁺ (in muscle), pyruvate (substrate), insulin (activates phosphatase)
  • Inhibited by: NADH, Acetyl-CoA, ATP, fatty acids; phosphorylation by PDH kinase inactivates PDC
PDC Deficiency: Causes lactic acidosis, neurological dysfunction; accumulated pyruvate → lactate; treated with ketogenic diet. Thiamine deficiency also impairs PDC → Wernicke-Korsakoff syndrome.

7. TRICARBOXYLIC ACID (TCA) CYCLE / CITRIC ACID CYCLE (KREBS CYCLE)

Location: Mitochondrial matrix
Input: 1 Acetyl-CoA (2C)
Output per turn: 3 NADH + 1 FADH₂ + 1 GTP + 2 CO₂
Complete oxidation of 1 glucose:
  • 2 pyruvate → 2 Acetyl-CoA → 2 TCA turns
  • Yields: 10 NADH + 2 FADH₂ + 2 GTP (from TCA alone)
  • Total ATP per glucose (with oxidative phosphorylation): 30-32 ATP

TCA Cycle Reactions

StepReactionEnzymeKey Points
1Acetyl-CoA + OAA → CitrateCitrate synthaseRegulated by ATP, NADH, succinyl-CoA
2Citrate → IsocitrateAconitaseContains iron-sulfur center
3Isocitrate → α-Ketoglutarate + CO₂Isocitrate dehydrogenaseRate-limiting; NADH produced; activated by ADP, Ca²⁺
4α-KG → Succinyl-CoA + CO₂α-KG dehydrogenase complexNADH produced; requires same cofactors as PDC
5Succinyl-CoA → SuccinateSuccinyl-CoA synthetaseGTP produced (substrate-level phosphorylation)
6Succinate → FumarateSuccinate dehydrogenaseFADH₂ produced; inhibited by malonate (competitive)
7Fumarate → MalateFumaraseHydration
8Malate → OAAMalate dehydrogenaseNADH produced; OAA regenerated for next turn

Anapleurotic Reactions (Replenishing TCA intermediates)

  • Pyruvate → OAA (pyruvate carboxylase)
  • Pyruvate → Malate (malic enzyme)
  • Amino acids → TCA intermediates (e.g., Glu → α-KG, Asp → OAA)

8. OXIDATIVE PHOSPHORYLATION

Location: Inner mitochondrial membrane
Process: NADH and FADH₂ donate electrons to the electron transport chain (ETC); the proton gradient drives ATP synthase.
SubstrateATP produced
1 NADH~2.5 ATP
1 FADH₂~1.5 ATP
Total from complete oxidation of 1 glucose:
  • Glycolysis: 2 ATP + 2 NADH (cytoplasmic)
  • PDC: 2 NADH
  • TCA: 2 GTP + 6 NADH + 2 FADH₂
  • Grand total: ~30-32 ATP

9. GLYCOGEN METABOLISM

Source: Biochemistry 8th ed. Lippincott Illustrated Reviews, p. 373-390

Overview

Glycogen is a branched-chain polysaccharide made exclusively from α-D-glucose units, with:
  • α-1,4 linkages in linear chains
  • α-1,6 linkages at branch points (every ~8-12 residues)
LocationAmountFunction
Liver~100g (~10% of fresh weight)Maintains blood glucose during fasting; depleted in <24h
Skeletal muscle~400g (~1-2% of fresh weight)Provides ATP for muscle contraction; cannot export glucose

Glycogenesis (Glycogen Synthesis)

  1. Glucose → Glucose-6-P (hexokinase/glucokinase)
  2. Glucose-6-P → Glucose-1-P (phosphoglucomutase)
  3. Glucose-1-P + UTP → UDP-Glucose + PPi (UDP-glucose pyrophosphorylase) - activated form
  4. UDP-Glucose → Glycogen(n+1) (glycogen synthase) - adds to non-reducing end via α-1,4 bond
  5. Branching enzyme (amyloglucosidase/branching enzyme): transfers ~7 glucose units to form new α-1,6 branch point
Rate-limiting enzyme: Glycogen synthase
Activation: Insulin (via dephosphorylation), glucose-6-phosphate
Inhibition: Glucagon/epinephrine (via phosphorylation by PKA)

Glycogenolysis (Glycogen Breakdown)

  1. Glycogen phosphorylase cleaves α-1,4 bonds: Glycogen(n) + Pi → Glycogen(n-1) + Glucose-1-P
    • Key regulatory enzyme - different isoforms in liver (PYGL) and muscle (PYGM)
    • Activated by: phosphorylation (glucagon/epinephrine → cAMP → PKA), AMP (muscle), Ca²⁺ (muscle)
    • Inhibited by: dephosphorylation (insulin), ATP, glucose-6-P (liver form only)
    • Stops 4 residues from a branch point (cannot cleave near branch)
  2. Debranching enzyme (bifunctional): transfers 3 residues from branch to main chain, then hydrolyzes the α-1,6 bond → free glucose (this is the ONLY step that releases free glucose from glycogenolysis)
  3. Glucose-1-P → Glucose-6-P (phosphoglucomutase)
  4. Liver only: Glucose-6-P → Glucose (glucose-6-phosphatase) → exported to blood
    • Muscle lacks glucose-6-phosphatase → cannot contribute to blood glucose

Hormonal Regulation

HormoneGlycogen SynthesisGlycogenolysis
Insulin (fed state)↑ (activates synthase)↓ (inactivates phosphorylase)
Glucagon (fasting, liver only)
Epinephrine (stress, both)

10. GLUCONEOGENESIS

Source: Biochemistry 8th ed. Lippincott Illustrated Reviews, p. 353-370
Definition: Synthesis of new glucose from non-carbohydrate precursors.
Location: Liver (~90% after overnight fast); kidney (~10%, increases to ~40% in prolonged starvation); small intestine can also contribute.
Occurs when: Glycogen is depleted (>4-6h fast), prolonged exercise, high-fat/low-carb states.

Gluconeogenic Precursors

  1. Lactate - from anaerobic glycolysis in RBCs and exercising muscle (Cori cycle)
  2. Glycerol - from lipolysis of triacylglycerols in adipose tissue
  3. Glucogenic amino acids - ALL except leucine and lysine; especially alanine (glucose-alanine cycle)
  4. Propionyl-CoA - from odd-chain fatty acid oxidation → succinyl-CoA → OAA → glucose

Unique Gluconeogenic Enzymes (bypass irreversible glycolytic steps)

Glycolytic Step (irreversible)Gluconeogenic Bypass Enzyme
Pyruvate kinase: PEP → PyruvatePyruvate carboxylase (Pyruvate → OAA) then PEPCK (OAA → PEP)
PFK-1: F6P → F-1,6-bisPFructose-1,6-bisphosphatase (FBPase-1) (F-1,6-bisP → F6P)
Hexokinase: Glucose → G6PGlucose-6-phosphatase (G6P → Glucose) - liver/kidney only
Pyruvate → PEP requires two mitochondrial steps:
  1. Pyruvate + CO₂ + ATP → OAA (pyruvate carboxylase; requires biotin; activated by acetyl-CoA)
  2. OAA must be converted to malate (crosses mitochondrial membrane), reconverted to OAA in cytosol
  3. OAA → PEP + CO₂ (PEPCK; requires GTP)

Cori Cycle

Lactate (from exercising muscle/RBCs) → liver → glucose → blood → muscle. This transfers the metabolic burden of lactic acid clearance to the liver.

Glucose-Alanine Cycle

Amino acids from muscle → alanine → blood → liver → gluconeogenesis + urea. Allows muscle to export nitrogen safely.

Regulation of Gluconeogenesis

ActivatorsInhibitors
Glucagon, cortisol, epinephrineInsulin
High acetyl-CoA (activates pyruvate carboxylase)AMP (inhibits FBPase-1)
High NADH (promotes lactate → OAA conversion)F-2,6-bisP (potently inhibits FBPase-1)

11. PENTOSE PHOSPHATE PATHWAY (Hexose Monophosphate Shunt)

Source: Biochemistry 8th ed. Lippincott Illustrated Reviews, p. 424-436
Location: Cytosol
Does NOT produce or consume ATP
Two main products:
  1. NADPH - reducing power for biosynthesis (fatty acids, cholesterol, steroids) and antioxidant defense
  2. Ribose-5-phosphate - for nucleotide and nucleic acid synthesis
Pentose phosphate pathway - oxidative and nonoxidative phases
Figure: Complete pentose phosphate pathway. Left: irreversible oxidative phase producing NADPH. Right: reversible nonoxidative phase with transketolase and transaldolase. Source: Lippincott Illustrated Reviews Biochemistry 8e

Phase 1: Oxidative (Irreversible)

Glucose-6-P → 6-Phosphogluconolactone → 6-Phosphogluconate → Ribulose-5-P + CO₂
Produces 2 NADPH per glucose-6-P
Rate-limiting enzyme: Glucose-6-phosphate dehydrogenase (G6PD)

Phase 2: Non-oxidative (Reversible)

  • Ribulose-5-P can be isomerized to ribose-5-P or xylulose-5-P
  • Transketolase (requires thiamine/B1) and Transaldolase interconvert C3, C4, C5, C6, C7 sugars
  • Can feed intermediates back into glycolysis (as F-6-P and G3P) when NADPH is more needed than ribose
  • Reversibility allows the cell to tune the ratio of NADPH to ribose production

G6PD Deficiency (Clinically Important)

  • Most common enzyme deficiency worldwide (X-linked)
  • Insufficient NADPH in RBCs → cannot reduce glutathione → RBCs vulnerable to oxidant stress
  • Triggers: Primaquine, dapsone, nitrofurantoin, sulfonamides, fava beans, infection
  • Presentation: Acute hemolytic anemia; Heinz bodies (denatured Hb) on blood smear; "bite cells"
  • Key lab: Low G6PD activity on enzyme assay; elevated reticulocytes after crisis

12. FRUCTOSE AND GALACTOSE METABOLISM

Fructose Metabolism (Liver)

Dietary fructose is primarily metabolized in the liver:
  1. Fructose → Fructose-1-P (fructokinase) - very rapid, no feedback inhibition → ATP depletion if fructose load is high
  2. Fructose-1-P → DHAP + Glyceraldehyde (aldolase B - liver specific)
  3. Products enter glycolysis at the triose level
Fructokinase bypasses the regulated PFK-1 step - hence fructose enters glycolysis unregulated, promoting fat synthesis.
Essential fructosuria: Fructokinase deficiency → fructose in urine; benign, asymptomatic.
Hereditary fructose intolerance: Aldolase B deficiency → F-1-P accumulates → severe liver/kidney damage; hypoglycemia; vomiting; avoidance of sucrose/fructose is treatment.

Galactose Metabolism (Leloir Pathway)

Dietary galactose (from lactose):
  1. Galactose → Galactose-1-P (galactokinase)
  2. Gal-1-P + UDP-Glucose → Glucose-1-P + UDP-Galactose (Gal-1-P uridylyltransferase - GALT)
  3. UDP-Galactose → UDP-Glucose (UDP-galactose-4-epimerase)
Galactosemia:
TypeEnzyme DeficientPresentation
Classic (Type I)Gal-1-P uridylyltransferase (GALT)Jaundice, cataracts, liver failure, intellectual disability, E. coli sepsis in newborns
Type II (Galactokinase deficiency)GalactokinaseCataracts only (galactitol accumulates in lens)
Type III (Epimerase deficiency)UDP-galactose-4-epimeraseVariable
  • Accumulated galactose → galactitol (via aldose reductase) → cataracts
  • Galactose-1-P accumulates → toxic to liver, brain, kidney
  • Treatment: Eliminate galactose/lactose from diet; newborn screening

13. GLYCOGEN STORAGE DISEASES (GSDs)

Source: Basic Medical Biochemistry 6e
TypeEponymEnzyme DeficientOrganKey Features
Type 0-Glycogen synthaseLiverHypoglycemia, hyperketonemia
Type IVon GierkeGlucose-6-phosphataseLiver, kidneySevere fasting hypoglycemia, hepatomegaly, lactic acidosis, lipemia
Type IIPompeLysosomal α-glucosidase (acid maltase)All organs (lysosomes)Infantile: cardiomegaly, severe hypotonia, death by age 2; adult form: myopathy
Type IIICori/ForbesDebranching enzyme (AGL)Liver, muscleHepatomegaly, mild hypoglycemia, myopathy; short outer branches
Type IVAndersenBranching enzyme (GBE1)LiverHepatosplenomegaly; long outer branches; often fatal
Type VMcArdleMuscle glycogen phosphorylase (PYGM)Skeletal muscleExercise intolerance, muscle cramps, myoglobinuria; no rise in venous lactate with exercise
Type VIHersLiver glycogen phosphorylase (PYGL)LiverHepatomegaly, mild hypoglycemia; good prognosis
Type VIITaruiPhosphofructokinase-1Muscle, RBCsSimilar to Type V + hemolytic anemia
Type IX-Phosphorylase kinaseLiver and/or muscleSimilar to Type VI
Memory tip for Von Gierke (Type I): No G6Pase → glucose-6-P accumulates → excess lactate (glycolysis), hyperuricemia (purine synthesis), hyperlipidemia (lipogenesis) + severe fasting hypoglycemia.
Pompe: "Pompe pumps glycogen into lysosomes" - lysosomal storage disease.
McArdle: "McArdle can't exercise" - ischemic forearm exercise test shows no lactate rise.

14. BLOOD GLUCOSE REGULATION

Normal Values

StateGlucose (mg/dL)
Fasting (normal)70-99
2h postprandial (normal)< 140
Impaired fasting glucose100-125
Impaired glucose tolerance (2h)140-199
Diabetes mellitus (fasting)≥ 126 (on 2 occasions)
Hypoglycemia< 70

Hormones Regulating Blood Glucose

HormoneSourceEffect on Glucose
InsulinPancreatic β cells↓ glucose (anabolic: ↑ glycogenesis, ↑ glycolysis, ↑ lipogenesis; ↓ gluconeogenesis, ↓ glycogenolysis)
GlucagonPancreatic α cells↑ glucose (catabolic in liver: ↑ gluconeogenesis, ↑ glycogenolysis)
EpinephrineAdrenal medulla↑ glucose (↑ glycogenolysis in liver and muscle, ↑ gluconeogenesis)
CortisolAdrenal cortex↑ glucose (↑ gluconeogenesis from amino acids, anti-insulin)
Growth hormoneAnterior pituitary↑ glucose (long-term anti-insulin action)
SomatostatinPancreatic δ cells, hypothalamus↓ both insulin and glucagon secretion

Postprandial State (Fed State)

Insulin rises → GLUT-4 insertion → glucose uptake into muscle/fat → glycogenesis in liver/muscle → glycolysis → lipogenesis → gluconeogenesis suppressed.

Fasting State

Glucagon rises → liver glycogenolysis (first 6-12h) → liver gluconeogenesis (>12h) → adipose lipolysis → FFAs as fuel for muscle; ketogenesis for brain.

15. CARBOHYDRATE MALABSORPTION

Source: Sleisenger and Fordtran's Gastrointestinal and Liver Disease; Medical Physiology

Lactose Intolerance (Most Common)

  • Primary: Age-related decline in lactase (adult-type hypolactasia); most common in East Asians, Africans, Middle Easterners
  • Secondary: Mucosal damage (celiac disease, Crohn's, giardiasis, viral gastroenteritis)
  • Pathophysiology: Undigested lactose → osmotic diarrhea + colonic bacterial fermentation → H₂/CO₂/short-chain fatty acids → bloating, flatulence, cramps, diarrhea
  • Diagnosis: Hydrogen breath test (gold standard), lactose tolerance test, genetic testing (LCT gene)
  • Treatment: Lactase enzyme supplements, lactose-free dairy, calcium supplementation

Sucrase-Isomaltase Deficiency

  • Rare; presents in infancy when sucrose is introduced
  • Osmotic diarrhea after sucrose/starch ingestion
  • Treatment: sucrose-free diet, sacrosidase enzyme replacement

Malabsorptive Diarrhea General Mechanism

Unabsorbed sugars in the colon → osmotic diarrhea + fermentation → bloating, flatulence, watery diarrhea, acidic stool (pH < 5.5), positive reducing substances in stool.

16. DIABETES MELLITUS (Carbohydrate Perspective)

Type 1 DM

  • Autoimmune destruction of β cells → absolute insulin deficiency
  • No insulin → GLUT-4 not inserted → hyperglycemia; unrestrained lipolysis → ketoacidosis
  • Glucosuria when blood glucose exceeds renal threshold (~180 mg/dL)

Type 2 DM

  • Insulin resistance + progressive β-cell dysfunction
  • Initially compensatory hyperinsulinemia, then β-cell failure
  • GLUT-4 translocation impaired in muscle/adipose

Hemoglobin A1c (HbA1c)

  • Glycated hemoglobin reflects average blood glucose over ~3 months (RBC lifespan)
  • Normal: <5.7%; Prediabetes: 5.7-6.4%; DM: ≥6.5%
  • HbA1c is formed by non-enzymatic glycation (not regulated by insulin)

17. QUICK CLINICAL PEARLS & HIGH-YIELD FACTS

FactDetail
Most common sugar in bloodGlucose
Only sugar made by mammary glandsLactose (galactose + glucose)
Storage form in animalsGlycogen (liver and muscle)
Only non-reducing disaccharideSucrose
Vitamin B1 (thiamine) in metabolismRequired for PDC, α-KG dehydrogenase, transketolase - deficiency causes lactic acidosis + Wernicke's
Enzyme bypassing PFK-1 regulationFructokinase (fructose enters glycolysis unregulated)
Muscle cannot export glucoseLacks glucose-6-phosphatase
Brain cannot use fatty acidsRelies on glucose (normal) or ketone bodies (starvation)
Cori cycleMuscle lactate → liver glucose; transfers "metabolic debt"
Glucose-alanine cycleMuscle alanine → liver glucose + urea
Most potent activator of PFK-1Fructose-2,6-bisphosphate
Warburg effectCancer cells prefer aerobic glycolysis (lactate production even in O₂) - high GLUT expression
G6PD deficiency trigger drugs"Primaquine, dapsone, nitrofurantoin, sulfonamides"
Von Gierke screening testGlucagon does NOT raise blood glucose (cannot mobilize glucose-6-P to blood)
McArdle diagnosisIschemic forearm test: lactate does NOT rise, ammonia rises normally

18. INTEGRATION SUMMARY

DIETARY CHO
     ↓  (digestion by amylases + brush border enzymes)
MONOSACCHARIDES (glucose, galactose, fructose)
     ↓  (absorbed via SGLT1/GLUT5 → GLUT2)
PORTAL BLOOD → LIVER
     ↓
GLUCOSE-6-PHOSPHATE  ←────────────────────────────────┐
     ├──→ GLYCOLYSIS → Pyruvate → Acetyl-CoA → TCA    │
     │                                → OXIDATIVE PHOS│
     ├──→ GLYCOGENESIS → GLYCOGEN (storage)            │
     ├──→ PENTOSE PHOSPHATE PATHWAY → NADPH + Ribose-5P│
     └──→ GLUCONEOGENESIS (fasting) ───────────────────┘

Sources cited:
  • Biochemistry, 8th ed. Lippincott Illustrated Reviews (Harvey & Ferrier)
  • Basic Medical Biochemistry: A Clinical Approach, 6th ed. (Lieberman & Peet)
  • Medical Physiology (Boron & Boulpaep)
  • Guyton and Hall Textbook of Medical Physiology
  • Sleisenger and Fordtran's Gastrointestinal and Liver Disease
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