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WHO Classification of CNS Tumors: A Histopathologist's Guide
The 2021 WHO Classification of Tumors of the Central Nervous System (5th edition) represents the most significant update in neuro-oncologic pathology, integrating molecular/genetic markers as essential diagnostic criteria alongside traditional histomorphology. Accurate diagnosis now requires both the glass slide and the molecular result.
Framework of the WHO 2021 CNS Classification
The key conceptual shift from prior editions:
- Tumor type is defined by morphology + molecular markers together
- CNS WHO grading is intratype (grade 2 astrocytoma vs. grade 3 astrocytoma are within the same entity, not a spectrum that includes glioblastoma)
- Arabic numerals are used for grades (grade 2, 3, 4 - not II, III, IV)
- Molecular features can override morphology for grading (e.g., IDH-wildtype diffuse astrocytoma with TERT mutation = glioblastoma grade 4, even without necrosis)
1. Diffuse Gliomas (Intraparenchymal, Infiltrating)
The most common group of primary brain tumors. They share diffuse infiltration of normal brain and are subclassified by three key features:
| Feature | Astrocytoma, IDH-mutant | Oligodendroglioma | Glioblastoma, IDH-wt |
|---|
| IDH status | Mutant | Mutant | Wildtype |
| Other genetics | TP53 mut, ATRX mut, CDKN2A-HD (grade 4) | 1p/19q codeletion | +7/-10, TERT-promoter mut, EGFR amp |
| Grades | 2, 3, 4 | 2 or 3 | 4 (by definition) |
| Morphology | Nuclear atypia; mitoses (grade 3); MVP/necrosis (grade 4) | Round nuclei, clear halos; mitoses + MVP/necrosis (grade 3) | Nuclear atypia, mitoses, MVP, necrosis |
(Robbins, Cotran & Kumar Pathologic Basis of Disease, Table 28.5)
1a. Astrocytoma, IDH-mutant (WHO Grades 2-4)
Key histologic features:
- Poorly demarcated, infiltrative gray tumor expanding white matter
- Hypercellularity with enlarged, elongated or irregular hyperchromatic nuclei embedded in a fibrillary background
- GFAP-positive fibrillary matrix; tumor cells show IDH1 R132H immunopositivity (inset)
- Grade 3: increased cellularity + readily detectable mitoses
- Grade 4: microvascular proliferation (multilayered small vessels) + necrosis and/or homozygous CDKN2A deletion
Gross & histology (IDH-mutant astrocytoma):
Fig. 28.46 - Astrocytoma, IDH-mutant. (A) Coronal section: left frontal white matter expanded with blurring of corticomedullary junction. (B) Enlarged irregular hyperchromatic nuclei in fibrillary matrix; inset shows IDH1 p.R132H immunostain positivity with perineuronal satellitosis. - Robbins, Cotran & Kumar Pathologic Basis of Disease
1b. Glioblastoma, IDH-wildtype (WHO Grade 4)
The most common primary CNS malignancy in adults (>55 years); 14% of all primary CNS tumors. All IDH-wildtype diffuse astrocytomas are WHO grade 4 by definition.
Gross: Heterogeneous - firm gray-white areas + yellow necrotic zones + red hemorrhagic/hypervascular areas. Classic "butterfly glioma" crosses corpus callosum.
Key histologic features:
- Pseudopalisading necrosis: serpentine bands of necrosis with viable hypercellular tumor arranged in palisades along the necrotic edge
- Microvascular proliferation: tufts of cells piling up within vessel lumens (glomeruloid bodies)
- High cellularity, marked nuclear pleomorphism, brisk mitoses
- Ring-enhancing on MRI
Gross & histology (Glioblastoma):
Fig. 21.31 - Glioblastoma. (A) Necrotic, hemorrhagic infiltrating mass. (B) Serpiginous palisading necrosis; inset: microvascular proliferation (glomeruloid bodies). - Robbins & Kumar Basic Pathology
Glioblastoma gross section (axial cut):
Fig. 72.3 - Right hemispheric glioblastoma with central necrosis and hyperemic rim (Bradley and Daroff's Neurology in Clinical Practice)
1c. Oligodendroglioma, IDH-mutant and 1p/19q-codeleted (WHO Grades 2-3)
5-15% of gliomas; best prognosis among diffuse gliomas. Frontal/temporal lobe predilection; gyriform calcifications on imaging are characteristic.
Defining molecular signature: IDH1/2 mutation + 1p/19q codeletion (both required for diagnosis)
Key histologic features:
- Uniformly round nuclei with bland chromatin
- "Fried-egg" appearance: clear perinuclear halo (formalin fixation artifact; absent in frozen sections)
- "Chicken-wire" vasculature: rich branching delicate capillary network
- Cortical involvement, microcalcifications, mucin-rich microcystic spaces, perineuronal satellitosis
- Grade 3 (anaplastic): hypercellularity, numerous mitoses, microvascular proliferation
Histology (Oligodendroglioma):
Fig. 72.2 - Oligodendroglioma. Uniform round nuclei with clear perinuclear halos ("fried-egg" appearance); branching "chicken-wire" capillaries. H&E x200. - Bradley and Daroff's Neurology in Clinical Practice
2. Pilocytic Astrocytoma (WHO Grade 1)
A circumscribed (non-diffuse) glioma; distinct entity from diffuse astrocytomas. Most common pediatric CNS tumor; cerebellar predominance.
- KIAA1549::BRAF fusion in >70% - a defining molecular feature
- Grossly: well-demarcated cystic mass with enhancing mural nodule
Key histologic features:
- Biphasic architecture: alternating loose "microcystic" and compact densely fibrillar areas
- Bipolar cells with long thin "hair-like" (pilocytic) processes, GFAP-positive
- Rosenthal fibers: eosinophilic corkscrew-shaped inclusions (pathognomonic in context)
- Eosinophilic granular bodies (mulberry-like inclusions)
- Microvascular proliferation and necrosis do NOT imply worse prognosis (unlike diffuse gliomas)
Gross & histology (Pilocytic Astrocytoma):
Fig. 28.50 - Pilocytic astrocytoma. (A) Cerebellar cyst with mural nodule. (B) Sharp circumscription with biphasic loose/compact growth. (C) Rosenthal fibers (brightly eosinophilic corkscrew-shaped inclusions). - Robbins, Cotran & Kumar Pathologic Basis of Disease
3. Ependymoma (WHO Grades 2-3; Subependymoma Grade 1)
Arise from ependymal lining of ventricles and central canal. Location-defined classification in WHO 2021:
- Supratentorial: often ZFTA::RELA fusion (poor prognosis) or YAP1 fusion (better prognosis)
- Posterior fossa type A (PFA): H3K27me3 loss by IHC (poor prognosis)
- Posterior fossa type B (PFB): H3K27me3 retained (better prognosis)
- Spinal: NF2 mutation; rare MYCN-amplified (poor prognosis)
Key histologic features:
- Perivascular pseudorosettes: tumor cells arranged around blood vessels with anuclear fibrillary zones (most common)
- True ependymal rosettes/canals: tumor cells around central lumen (pathognomonic but less common)
- GFAP-positive fibrillary background
- Solid, non-infiltrative masses (unlike diffuse gliomas)
4. Medulloblastoma (WHO Grades 3-4 equivalent)
Most common malignant pediatric CNS tumor; arises in cerebellar vermis. Highly radiosensitive. WHO 2021 classifies by both histologic type and molecular group.
Molecular groups (prognosis-defining):
| Group | Prognosis | Key Features |
|---|
| WNT-activated | ~100% 5-year survival | CTNNB1 mutation, monosomy 6 |
| SHH-activated | Intermediate | PTCH1/SMO mutations; TP53 mut (worse) |
| Group 3 | Poor (20-30% survival) | MYC amplification; metastatic |
| Group 4 | Intermediate | Most common; isochromosome 17q |
Histologic subtypes:
- Classic: sheets of small round blue cells (SRBCT), Homer-Wright rosettes (incomplete rosettes around neuropil)
- Desmoplastic/nodular: pale "islands" surrounded by dense desmoplastic stroma (nodules = reticulin-poor)
- Large cell/anaplastic: large cells with prominent nucleoli + nuclear molding (worst prognosis)
- MBEN (medulloblastoma with extensive nodularity): florid nodular pattern, excellent prognosis in infants
Gross & histology (Medulloblastoma):
Fig. 28.52 - Medulloblastoma. (A) Gross: cerebellar vermis replacement. (B) Classic type: dense sheets of small blue cells with Homer-Wright rosettes (arrows). (C) Desmoplastic/nodular pattern. (D) Large cell/anaplastic type. - Robbins, Cotran & Kumar Pathologic Basis of Disease
5. Meningioma (WHO Grades 1-3)
Arise from meningothelial (arachnoid cap) cells; most common primary intracranial tumor overall. Female predominance (2:1 overall; 10:1 for spinal). Prior radiation is a risk factor. NF2 mutation is the most common genetic alteration.
Histologic subtypes (Grade 1 - most):
- Meningothelial: clusters of epithelioid cells with indiscernible cell membranes
- Fibroblastic: intersecting fascicles of spindled cells + abundant collagen
- Transitional: mixed features with numerous whorls
- Psammomatous: abundant psammoma bodies (concentric calcified rings)
- Secretory, microcystic, lymphoplasmacyte-rich, angiomatous (others)
Grade 2 (atypical, ~25%): increased mitotic index (≥4/10 HPF), brain invasion, or chordoid/clear cell pattern
Grade 3 (anaplastic, 1-3%): markedly elevated mitoses; resembles carcinoma or sarcoma; retains meningothelial features
Gross & histology (Meningioma):
Fig. 28.53 - Meningioma. (A) Parasagittal multilobular meningioma compressing underlying brain. (B) Whorled cell growth with numerous psammoma bodies. - Robbins, Cotran & Kumar Pathologic Basis of Disease
6. Primary CNS Lymphoma
- 2% of extranodal lymphomas; most common CNS neoplasm in immunosuppressed patients
- Virtually always diffuse large B-cell lymphoma (DLBCL)
- Multifocal, periventricular, deep subcortical
- Malignant cells accumulate around blood vessels (angiocentric pattern), express CD20
- In immunosuppressed: necrosis prominent; EBV positive (EBER ISH)
- In immunocompetent: PDL1 gene amplification common; worse prognosis than nodal DLBCL
7. Metastatic Tumors
Account for 25-50% of intracranial tumors in hospitalized patients. Common primaries (in order): lung > breast > melanoma > kidney > GI tract (~80% combined). Typically well-circumscribed, ring-enhancing, gray-white masses at gray-white matter junction. Always consider metastasis in older patients with multiple lesions.
Key Molecular Tests for Pathologists (WHO 2021)
| Marker | Significance |
|---|
| IDH1/2 mutation | Distinguishes astrocytoma/oligodendroglioma from GBM and reactive gliosis |
| 1p/19q codeletion | Defines oligodendroglioma (combined with IDH mutation) |
| ATRX/TP53 | Supports astrocytoma lineage (mutually exclusive with 1p/19q codeletion) |
| TERT promoter mutation | Marks GBM (IDH-wt), oligodendroglioma; prognostic |
| EGFR amplification / +7/-10 | Molecular hallmarks of GBM |
| CDKN2A homozygous deletion | Upgrades IDH-mutant astrocytoma to grade 4 |
| MGMT promoter methylation | Predicts temozolomide sensitivity in GBM |
| H3K27me3 loss (IHC) | Identifies PFA ependymoma |
| KIAA1549::BRAF fusion | Diagnostic for pilocytic astrocytoma |
| CTNNB1 / WNT pathway | WNT medulloblastoma (best prognosis) |
| DNA methylation profiling | Gold standard for difficult cases; supersedes histology in ambiguous tumors |
A 2025 JAMA Oncology
review by Horbinski et al. (PMID: 39724142) emphasizes that routine advanced molecular profiling is now the standard of care - the cost is less than 5% of total CNS tumor treatment costs and consistently improves accuracy of diagnosis and grading, eligibility for clinical trials, and prediction of treatment response.
Grading Summary Table
| Tumor | WHO Grade | Key Histologic Hallmark |
|---|
| Pilocytic astrocytoma | 1 | Biphasic, Rosenthal fibers, well-circumscribed |
| Astrocytoma, IDH-mutant | 2 | Hypercellular, nuclear atypia, infiltrative |
| Astrocytoma, IDH-mutant | 3 | + Mitoses |
| Astrocytoma, IDH-mutant | 4 | + MVP/necrosis or CDKN2A HD |
| Glioblastoma, IDH-wt | 4 | Palisading necrosis, MVP, pleomorphism |
| Oligodendroglioma | 2 | Fried-egg cells, chicken-wire vessels |
| Oligodendroglioma | 3 | + Mitoses, MVP/necrosis |
| Ependymoma | 2-3 | Perivascular pseudorosettes |
| Medulloblastoma | 4 (aggressive) | Small blue cells, Homer-Wright rosettes |
| Meningioma | 1 | Whorls, psammoma bodies |
| Meningioma | 2 (atypical) | ≥4 mitoses/10 HPF or brain invasion |
| Meningioma | 3 (anaplastic) | Carcinoma/sarcoma-like, high mitoses |
Sources: Robbins, Cotran & Kumar Pathologic Basis of Disease, p.1192-1200; Robbins & Kumar Basic Pathology, p.877; Bradley and Daroff's Neurology in Clinical Practice; Horbinski et al., JAMA Oncol 2025 (PMID: 39724142)