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Cell Organelles & Cell Cycle - Detailed NORCET Notes
Source: Histology: A Text and Atlas | Medical Physiology (Boron & Boulpaep)
PART 1: CELL ORGANELLES
Overview
Every organelle is enclosed by a membrane built from the same phospholipid bilayer. The membrane's properties determine the organelle's function. All organelles work together to keep the cell alive and functioning.
1. NUCLEUS
Structure:
- Largest organelle in the cell
- Surrounded by a double membrane = nuclear envelope
- Outer membrane: studded with ribosomes, continuous with rough ER
- Inner membrane: smooth, faces nucleoplasm
- The space between membranes = perinuclear cisternal space (continuous with RER lumen)
- Nuclear pores: where outer and inner membranes meet; transport pathway between cytoplasm and nucleus
Contents:
| Component | Description |
|---|
| Chromatin | DNA + histone proteins; responsible for basophilia of nucleus |
| Euchromatin | Lightly staining; dispersed, transcriptionally active |
| Heterochromatin | Densely staining; condensed, transcriptionally inactive |
| Nucleolus | Site of rRNA synthesis; assembles ribosomal subunits; disappears during cell division |
| Nucleoplasm | All nuclear content excluding chromatin and nucleolus |
Chromatin Key Facts:
- Human cell has 46 chromosomes, ~6 billion base pairs, 1.8 m of DNA per cell
- DNA is packed using histones (5 basic proteins: H1, H2A, H2B, H3, H4)
- Nucleosome = DNA wound around 8 histones (H2A, H2B, H3, H4 × 2 each)
- Human genome sequenced in 2003 (Human Genome Project, 13 years)
- ~23,000 protein-coding genes
Nuclear Changes in Dying Cells (NORCET MCQ Favourite):
| Change | Description |
|---|
| Pyknosis | Chromatin condensation → nucleus shrinks, appears dark basophilic mass |
| Karyorrhexis | Nucleus fragments (usually follows pyknosis) |
| Karyolysis | Nucleus completely dissolves (DNase activity) |
Mnemonic: PKL - Pyknosis → Karyorrhexis → Karyolysis (sequence of nuclear death)
2. MITOCHONDRIA
Structure:
- "Balloon within a balloon" - two membranes
- Outer membrane: smooth, permeable to small molecules
- Inner membrane: impermeable; thrown into folds = cristae (increases surface area)
- Intermembrane space: between outer and inner membrane
- Matrix: inside inner membrane; contains mitochondrial DNA, ribosomes, enzymes
Functions:
- ATP production (oxidative phosphorylation) - primary role
- Fatty acid beta-oxidation
- Citric acid (Krebs) cycle occurs in matrix
- Electron transport chain on inner membrane cristae
- Calcium homeostasis
- Apoptosis initiation (releases cytochrome c)
Unique Features:
- Has its OWN DNA (circular, like bacteria) - supports endosymbiotic theory
- Has own ribosomes (70S, like bacteria; cytoplasmic ribosomes are 80S)
- Inherited maternally (mitochondrial DNA diseases - maternal inheritance)
- Can self-replicate (binary fission)
- ~0.2 μm diameter (at limit of light microscope resolution)
Mnemonic: Mitochondria = Maternal inheritance, Matrix has Krebs cycle, Makes ATP
3. ENDOPLASMIC RETICULUM (ER)
| Feature | Rough ER (RER) | Smooth ER (SER) |
|---|
| Ribosomes | Present (studded) | Absent |
| Main function | Protein synthesis + modification | Lipid/steroid synthesis, detoxification |
| Ca²⁺ storage | Yes | Yes (main store) |
| Location | Continuous with nuclear envelope | Throughout cytoplasm |
| Abundant in | Secretory cells (pancreatic acinar, plasma cells) | Liver cells, steroid-secreting cells, muscle cells |
Key Points:
- ER is a large interconnected network of tubules and saccules
- RER outer membrane is continuous with outer nuclear membrane
- SER contains Ca²⁺ pump (uses ATP) → pumps Ca²⁺ from cytoplasm into ER lumen → released for intracellular signaling
- In muscle cells, SER is called sarcoplasmic reticulum (releases Ca²⁺ to trigger muscle contraction)
4. GOLGI APPARATUS (GOLGI COMPLEX)
- Structure: Stack of flattened membrane saccules (looks like "stack of pancakes")
- Has a cis face (receives vesicles from RER) and trans face (sends vesicles out)
- Functions:
- Processes and modifies proteins from RER (glycosylation, phosphorylation, sulfation)
- Packages proteins into secretory vesicles
- Produces lysosomes
- Targets proteins to correct subcellular destinations
- Produces mucus (glycoproteins)
Called the "Post office" or "processing station" of the cell
5. LYSOSOMES
- Structure: Membrane-bound vesicle containing ~60 hydrolytic enzymes
- pH: ~5 (acidic) - maintained by H⁺ pump in lysosome membrane
- Functions:
- Intracellular digestion (autophagy - digestion of own organelles)
- Phagocytosis (destroys bacteria and debris)
- Receptor recycling (endocytosis pathway)
Key Clinical Associations:
- Lysosomal storage diseases = enzyme deficiencies → substrates accumulate
- Gaucher disease: glucocerebrosidase deficiency
- Tay-Sachs: hexosaminidase A deficiency
- Pompe disease: alpha-glucosidase deficiency (affects cardiac and skeletal muscle)
Called the "Suicide bag" because rupture causes cell self-destruction
6. RIBOSOMES
| Type | Location | Products |
|---|
| Free ribosomes | Cytoplasm | Proteins used inside the cell (cytoplasmic, nuclear proteins) |
| Bound ribosomes | On RER | Secretory proteins, membrane proteins, lysosomal proteins |
- Size in eukaryotes: 80S (60S large subunit + 40S small subunit)
- Size in prokaryotes and mitochondria: 70S (50S + 30S)
- Made of rRNA + proteins
- Polyribosomes (polysomes) = multiple ribosomes on one mRNA strand
7. PEROXISOMES
- Small membrane-bound organelles
- Functions:
- Beta-oxidation of very long chain fatty acids (VLCFAs)
- Detoxification of hydrogen peroxide (H₂O₂) using catalase
- Bile acid synthesis
- Cholesterol synthesis
- Disease: Zellweger syndrome = absence of functional peroxisomes → VLCFA accumulation
8. CYTOSKELETON
Three main components:
| Component | Protein | Diameter | Functions | Location/Example |
|---|
| Microfilaments | Actin (G-actin → F-actin) | 7 nm (thinnest) | Cell movement, shape, cytokinesis, microvilli core | Muscle cells, microvilli |
| Intermediate filaments | Keratin, vimentin, desmin, neurofilaments, GFAP, lamins | 10 nm (intermediate) | Structural support, mechanical strength | Various tissues (keratin in epithelium, vimentin in connective tissue) |
| Microtubules | Tubulin (α and β subunits) | 25 nm (thickest) | Cell division (spindle), intracellular transport, cilia/flagella | Centrioles, axons, cilia |
Intermediate filament markers (NORCET exam - pathology):
| Filament | Cell Type | Use |
|---|
| Keratin (cytokeratin) | Epithelial cells | Marker for epithelial tumors/carcinomas |
| Vimentin | Connective tissue, endothelium | Marker for sarcomas |
| Desmin | Muscle cells | Marker for muscle tumors |
| GFAP | Astrocytes | Marker for astrocytomas |
| Neurofilaments | Neurons | Marker for neuronal tumors |
9. CENTRIOLES & CENTROSOME
- Centrioles are paired cylindrical structures made of 9 triplets of microtubules (9×3 arrangement)
- Centrosome = pair of centrioles + surrounding pericentriolar material
- Functions: form the mitotic spindle during cell division
- Absent in: mature neurons (cannot divide), mature red blood cells, cardiac muscle cells
10. CELL MEMBRANE (PLASMA MEMBRANE)
- Fluid Mosaic Model (Singer & Nicolson, 1972)
- Composition: phospholipid bilayer + proteins + cholesterol + glycolipids
- Hydrophilic heads face outward (toward water); hydrophobic tails face inward
- Cholesterol: maintains membrane fluidity (prevents too rigid in cold, too fluid in heat)
- Proteins:
- Integral proteins: embedded in bilayer (e.g., ion channels, receptors, transporters)
- Peripheral proteins: on surface (e.g., enzymes, structural proteins)
- Glycocalyx: carbohydrate coat on outer surface; cell recognition, adhesion, immune response
PART 2: THE CELL CYCLE
Overview
The cell cycle is a self-regulated sequence of events controlling cell growth and division. It is driven by cyclin-CDK complexes (cyclin + cyclin-dependent kinase).
Phases of the Cell Cycle
G1 → S → G2 → M (Mitosis) → G1...
↑
(Interphase = G1 + S + G2)
| Phase | What Happens | Duration |
|---|
| G1 (Gap 1) | Cell grows; synthesizes RNA and proteins; prepares for DNA synthesis | Longest, most variable |
| S (Synthesis) | DNA replication (46 → 92 chromatids); DNA content doubles | ~8 hours |
| G2 (Gap 2) | Cell continues growing; prepares for mitosis; checks DNA quality | ~4-5 hours |
| M (Mitosis) | Nuclear division → two daughter cells | ~1 hour |
| G0 | Resting/quiescent state; cells exit cycle (e.g., neurons, cardiac muscle) | Variable |
Cell Cycle Checkpoints - HIGH YIELD
| Checkpoint | Location | What is Checked | Key Regulator |
|---|
| Restriction point (R point) | Late G1 | Cell size, nutrients, growth factors | Rb protein (tumor suppressor) |
| S-phase DNA damage checkpoint | S phase | DNA damage during replication | p53, ATM kinase |
| G2/M DNA damage checkpoint | G2/M boundary | Quality of replicated DNA; unreplicated DNA | Cyclin B-CDK1 |
| Spindle assembly checkpoint | M phase (metaphase) | All chromosomes attached to spindle | BubR1, Mad2 proteins |
p53 = "Guardian of the genome"; mutated in >50% of all cancers; triggers apoptosis or cell cycle arrest when DNA is damaged
Cyclin-CDK Regulation
| Cyclin | CDK Partner | Active Phase |
|---|
| Cyclin D | CDK4/6 | G1 progression |
| Cyclin E | CDK2 | G1/S transition |
| Cyclin A | CDK2 | S phase |
| Cyclin B | CDK1 (CDC2) | G2/M transition (MPF) |
- Cyclins are synthesized and degraded at regular intervals
- CDKs are always present but need cyclin to activate them
- MPF (Maturation Promoting Factor) = Cyclin B + CDK1 → triggers entry into mitosis
MITOSIS - Phases in Detail (M Phase)
Mnemonic: PMAT - Prophase, Metaphase, Anaphase, Telophase
| Phase | Key Events |
|---|
| Prophase | Chromatin condenses → chromosomes visible; nuclear envelope breaks down; mitotic spindle forms from centrioles |
| Prometaphase | Spindle fibers attach to kinetochores (centromeres) of chromosomes |
| Metaphase | Chromosomes align at equatorial plate (metaphase plate); spindle assembly checkpoint here |
| Anaphase | Sister chromatids separate and pulled to opposite poles by spindle fibers; cell elongates |
| Telophase | Nuclear envelope reforms around each set of chromosomes; chromosomes decondense |
| Cytokinesis | Division of cytoplasm (cleavage furrow in animal cells) → two identical daughter cells |
Result of Mitosis: 2 daughter cells, each with 46 chromosomes (2n → 2n), genetically identical
MEIOSIS (vs. Mitosis)
| Feature | Mitosis | Meiosis |
|---|
| Purpose | Growth, repair, asexual reproduction | Gamete production |
| Cell type | Somatic cells | Germ cells (gonads) |
| Divisions | 1 | 2 (Meiosis I + II) |
| Daughter cells | 2 | 4 |
| Chromosome number | 46 → 46 (2n → 2n) | 46 → 23 (2n → n) |
| Genetic result | Identical | Genetically diverse (crossing over) |
| Crossing over | No | Yes (Prophase I) |
Meiosis I (Reductional division):
- Prophase I: Homologous chromosomes pair (synapsis) → crossing over (genetic recombination) occurs at chiasmata
- Produces 2 cells with haploid number of chromosomes but diploid DNA content
Meiosis II (Equational division):
- Similar to mitosis
- Separates sister chromatids
- Produces 4 haploid cells (23 chromosomes each)
CELL DEATH
| Type | Description | Features |
|---|
| Necrosis | Pathological; due to acute injury (trauma, ischemia, toxins) | Cell swells → membrane ruptures → inflammation |
| Apoptosis | Programmed cell death; physiologic or pathologic | Cell shrinks; membrane blebs; DNA laddering; no inflammation; caspase-dependent |
| Anoikis | Apoptosis triggered by loss of cell attachment (detachment from ECM) | Important in cancer metastasis resistance |
Apoptosis Key Facts:
- Intrinsic pathway: triggered by internal signals (DNA damage, hypoxia) → mitochondria releases cytochrome c → activates caspases
- Extrinsic pathway: triggered by death receptors (Fas/FasL, TNF) → caspase cascade
- Bcl-2 family: anti-apoptotic (Bcl-2, Bcl-XL); pro-apoptotic (Bax, Bak)
- p53 promotes apoptosis when DNA damage is irreparable
ORGANELLES AT A GLANCE - Quick Reference
| Organelle | Nickname | Key Function | High-Yield Fact |
|---|
| Nucleus | Control centre | DNA storage + gene expression | Heterochromatin = inactive; euchromatin = active |
| Mitochondria | Powerhouse | ATP production | Own DNA; maternal inheritance |
| RER | Protein factory | Synthesize secretory proteins | Studded with ribosomes |
| SER | Lipid factory | Lipid/steroid synthesis, detox | Sarcoplasmic reticulum in muscle |
| Golgi | Post office | Process + package proteins | Cis = receives; Trans = sends |
| Lysosome | Suicide bag | Intracellular digestion | pH 5; contains hydrolases |
| Ribosome | Translator | Protein synthesis | 80S (eukaryotes); 70S (bacteria + mitochondria) |
| Peroxisome | Detox centre | Breaks down H₂O₂, VLCFAs | Contains catalase |
| Cytoskeleton | Skeleton | Shape, movement, division | 3 types: actin, intermediate filaments, microtubules |
| Centriole | Division organizer | Spindle formation | 9×3 microtubule arrangement |
MCQ Practice - Cell Organelles & Cell Cycle
Q1. Which organelle is responsible for detoxifying hydrogen peroxide?
- a) Lysosome
- b) Mitochondria
- c) Peroxisome ✅
- d) Smooth ER
Q2. Mitochondrial DNA is inherited via which parent?
- a) Paternal
- b) Maternal ✅
- c) Both equally
- d) Random
Q3. During which phase of the cell cycle does DNA replication occur?
- a) G1
- b) S phase ✅
- c) G2
- d) Prophase
Q4. Which checkpoint is the most important in G1 phase?
- a) Spindle assembly checkpoint
- b) Restriction point ✅
- c) S-phase DNA damage checkpoint
- d) G2/M checkpoint
Q5. Chromosomes align at the equatorial plate during which phase of mitosis?
- a) Prophase
- b) Anaphase
- c) Metaphase ✅
- d) Telophase
Q6. Crossing over (genetic recombination) occurs during which phase?
- a) Metaphase I of meiosis
- b) Prophase I of meiosis ✅
- c) Anaphase II of meiosis
- d) Prophase of mitosis
Q7. Which type of cell death does NOT cause inflammation?
- a) Necrosis
- b) Traumatic death
- c) Apoptosis ✅
- d) Infarction
Q8. Lysosomal storage disease Tay-Sachs results from deficiency of:
- a) Glucocerebrosidase
- b) Alpha-galactosidase
- c) Hexosaminidase A ✅
- d) Sphingomyelinase
Q9. Which ribosome size is found in mitochondria?
- a) 80S
- b) 60S
- c) 70S ✅
- d) 40S
Q10. The "Guardian of the genome" is:
- a) Rb protein
- b) Cyclin B
- c) p53 ✅
- d) CDK4
Answers: 1-c, 2-b, 3-b, 4-b, 5-c, 6-b, 7-c, 8-c, 9-c, 10-c
Want to continue with the next A&P topic? I can cover:
- Cardiovascular system (heart, blood vessels, cardiac cycle)
- Respiratory system (lung physiology, gas exchange)
- Nervous system (neurons, action potential, CNS/PNS)
- Renal system (kidney, nephron, filtration)