cd /home/daytona/workspace/attachments/47491e52-3344-4ef2-a4e4-ebfae64da065/ && python3 -c " import pdfplumber with pdfplumber.open('Here is a thorough definition and breakdown of Ana.pdf') as pdf: for i, page in enumerate(pdf.pages): print(f'=== PAGE {i+1} ===') print(page.extract_text()) print() "

mkdir -p /home/daytona/workspace/anatomical-flowcharts && cat > /home/daytona/workspace/anatomical-flowcharts/make_flowcharts.py << 'PYEOF' import matplotlib matplotlib.use('Agg') import matplotlib.pyplot as plt import matplotlib.patches as mpatches from matplotlib.patches import FancyBboxPatch, FancyArrowPatch from matplotlib.backends.backend_pdf import PdfPages import numpy as np pdf_path = "/home/daytona/workspace/anatomical-flowcharts/Anatomical_Nomenclature_Flowcharts.pdf" # ---------- helper drawing functions ---------- def rounded_box(ax, x, y, w, h, text, facecolor, textcolor='white', fontsize=11, bold=False): box = FancyBboxPatch((x - w/2, y - h/2), w, h, boxstyle="round,pad=0.05", facecolor=facecolor, edgecolor='white', linewidth=1.5, zorder=3) ax.add_patch(box) weight = 'bold' if bold else 'normal' ax.text(x, y, text, ha='center', va='center', fontsize=fontsize, color=textcolor, fontweight=weight, zorder=4, wrap=True, multialignment='center') def arrow_down(ax, x, y_start, y_end, color='#555555'): ax.annotate('', xy=(x, y_end + 0.02), xytext=(x, y_start - 0.02), arrowprops=dict(arrowstyle='->', color=color, lw=1.8), zorder=2) def arrow_right(ax, x_start, x_end, y, color='#555555'): ax.annotate('', xy=(x_end - 0.02, y), xytext=(x_start + 0.02, y), arrowprops=dict(arrowstyle='->', color=color, lw=1.8), zorder=2) # colour palette C_HEADER = '#1a3a5c' # dark navy C_MAIN = '#2e6da4' # blue C_ACCENT = '#3a9ad9' # light blue C_GREEN = '#2e8b57' # sea green C_ORANGE = '#d4720a' # orange C_PURPLE = '#6a3d9a' # purple C_TEAL = '#008080' # teal C_RED = '#c0392b' BG = '#f0f5fb' # ====================================================== # PAGE 1 - TITLE PAGE # ====================================================== with PdfPages(pdf_path) as pdf: fig, ax = plt.subplots(figsize=(11, 8.5)) fig.patch.set_facecolor(C_HEADER) ax.set_facecolor(C_HEADER) ax.set_xlim(0, 10); ax.set_ylim(0, 8) ax.axis('off') ax.text(5, 5.5, 'ANATOMICAL NOMENCLATURE', ha='center', va='center', fontsize=28, fontweight='bold', color='white') ax.text(5, 4.6, 'Visual Flowcharts', ha='center', va='center', fontsize=18, color=C_ACCENT) ax.text(5, 3.8, 'Based on Gray\'s Anatomy for Students, Ch.1 pp.18-20', ha='center', va='center', fontsize=12, color='#aac8e8', style='italic') # decorative line ax.plot([1.5, 8.5], [3.2, 3.2], color=C_ACCENT, lw=2) topics = ['Anatomical Position', 'Anatomical Planes', 'Terms of Direction', 'Inclusive Terminology', 'Summary'] for i, t in enumerate(topics): ax.text(5, 2.6 - i*0.45, f'• {t}', ha='center', va='center', fontsize=11, color='white') pdf.savefig(fig, bbox_inches='tight') plt.close() # ====================================================== # PAGE 2 - ANATOMICAL POSITION (flowchart) # ====================================================== fig, ax = plt.subplots(figsize=(11, 8.5)) fig.patch.set_facecolor(BG); ax.set_facecolor(BG) ax.set_xlim(0, 10); ax.set_ylim(0, 9) ax.axis('off') ax.text(5, 8.6, '1. THE ANATOMICAL POSITION', ha='center', fontsize=16, fontweight='bold', color=C_HEADER) ax.text(5, 8.2, 'The universal reference posture for all anatomical terms', ha='center', fontsize=10, color='#555', style='italic') # top box rounded_box(ax, 5, 7.5, 5.5, 0.65, 'ANATOMICAL POSITION\n(Universal Reference Posture)', C_HEADER, fontsize=12, bold=True) arrow_down(ax, 5, 7.17, 6.75) features = [ (5, 6.55, 'Body standing UPRIGHT'), (5, 5.90, 'Feet together, toes pointing FORWARD'), (5, 5.25, 'Hands by sides, palms facing FORWARD'), (5, 4.60, 'Face looking FORWARD'), (5, 3.95, 'Eyes open, focused in the DISTANCE'), (5, 3.30, 'Inferior orbit & top of ear opening\nin the SAME HORIZONTAL PLANE'), ] colors_f = [C_MAIN, C_ACCENT, C_GREEN, C_ORANGE, C_PURPLE, C_TEAL] for i, (x, y, txt) in enumerate(features): rounded_box(ax, x, y, 5.8, 0.50, txt, colors_f[i], fontsize=10) if i < len(features) - 1: arrow_down(ax, 5, y - 0.25, features[i+1][1] + 0.25) # note box rounded_box(ax, 5, 2.4, 7.5, 0.60, '★ ALL other anatomical terms are defined RELATIVE to this position', '#f39c12', textcolor=C_HEADER, fontsize=10, bold=True) pdf.savefig(fig, bbox_inches='tight') plt.close() # ====================================================== # PAGE 3 - ANATOMICAL PLANES # ====================================================== fig, ax = plt.subplots(figsize=(11, 8.5)) fig.patch.set_facecolor(BG); ax.set_facecolor(BG) ax.set_xlim(0, 10); ax.set_ylim(0, 9) ax.axis('off') ax.text(5, 8.65, '2. ANATOMICAL PLANES', ha='center', fontsize=16, fontweight='bold', color=C_HEADER) ax.text(5, 8.25, 'Three major groups of planes divide the body', ha='center', fontsize=10, color='#555', style='italic') rounded_box(ax, 5, 7.55, 5, 0.60, 'ANATOMICAL PLANES', C_HEADER, fontsize=13, bold=True) # branch lines xs = [1.8, 5.0, 8.2] for x in xs: ax.plot([5, x], [7.25, 6.75], color='#888', lw=1.5, zorder=1) planes = [ (1.8, 6.45, 'CORONAL\n(Frontal) Plane', C_MAIN, 'Vertical', 'Front & Back\n(Anterior / Posterior)'), (5.0, 6.45, 'SAGITTAL\nPlane', C_GREEN, 'Vertical,\nperpendicular\nto coronal', 'Right & Left parts'), (8.2, 6.45, 'TRANSVERSE\n(Horizontal/Axial)\nPlane', C_ORANGE, 'Horizontal', 'Top & Bottom\n(Superior / Inferior)'), ] for (x, y, name, col, orient, divides) in planes: rounded_box(ax, x, y, 2.8, 0.90, name, col, fontsize=10, bold=True) arrow_down(ax, x, y - 0.45, y - 1.1) rounded_box(ax, x, y - 1.4, 2.8, 0.55, f'Orientation:\n{orient}', '#5b9bd5', fontsize=9) arrow_down(ax, x, y - 1.68, y - 2.3) rounded_box(ax, x, y - 2.6, 2.8, 0.65, f'Divides into:\n{divides}', C_TEAL, fontsize=9) # special note for median sagittal rounded_box(ax, 5.0, 2.9, 3.2, 0.60, '★ Median Sagittal Plane:\npasses exactly through centre → equal halves', '#e67e22', textcolor='white', fontsize=9) ax.annotate('', xy=(5.0, 3.20), xytext=(5.0, 3.45), arrowprops=dict(arrowstyle='->', color=C_ORANGE, lw=1.5), zorder=2) pdf.savefig(fig, bbox_inches='tight') plt.close() # ====================================================== # PAGE 4 - TERMS OF DIRECTION (pairs) # ====================================================== fig, ax = plt.subplots(figsize=(11, 8.5)) fig.patch.set_facecolor(BG); ax.set_facecolor(BG) ax.set_xlim(0, 10); ax.set_ylim(0, 9) ax.axis('off') ax.text(5, 8.65, '3. TERMS OF LOCATION & DIRECTION', ha='center', fontsize=16, fontweight='bold', color=C_HEADER) ax.text(5, 8.25, 'Opposite pairs — each term has a defined counterpart', ha='center', fontsize=10, color='#555', style='italic') rounded_box(ax, 5, 7.55, 5.5, 0.60, 'TERMS OF LOCATION / DIRECTION', C_HEADER, fontsize=13, bold=True) pairs = [ # (left_term, left_col, left_example, right_term, right_col, right_example, y_center) ('ANTERIOR\n(Ventral)\nToward the FRONT', C_MAIN, 'e.g. nose is anterior', 'POSTERIOR\n(Dorsal)\nToward the BACK', C_RED, 'e.g. vertebral column\nis posterior to sternum', 6.55), ('MEDIAL\nCloser to MIDLINE', C_GREEN, 'e.g. nose is medial\nto the eyes', 'LATERAL\nFarther from MIDLINE', '#8e44ad', 'e.g. thumb is lateral\nto little finger', 5.45), ('SUPERIOR\nToward the HEAD', C_ACCENT, 'e.g. head is superior\nto shoulders', 'INFERIOR\nToward the FEET', C_ORANGE, 'e.g. knee is inferior\nto hip', 4.35), ('PROXIMAL\nCloser to ORIGIN\n/ attachment', C_TEAL, 'e.g. shoulder is\nproximal to elbow', 'DISTAL\nFarther from ORIGIN', '#c0392b', 'e.g. hand is\ndistal to elbow', 3.25), ] for (lt, lc, le, rt, rc, re, yc) in pairs: rounded_box(ax, 2.2, yc, 3.5, 0.90, lt, lc, fontsize=9, bold=True) rounded_box(ax, 7.8, yc, 3.5, 0.90, rt, rc, fontsize=9, bold=True) # vs label in centre ax.text(5, yc, 'vs', ha='center', va='center', fontsize=11, fontweight='bold', color=C_HEADER, bbox=dict(boxstyle='circle,pad=0.3', fc='white', ec=C_HEADER, lw=1.5)) # example labels below ax.text(2.2, yc - 0.57, le, ha='center', va='top', fontsize=8, color='#444', style='italic') ax.text(7.8, yc - 0.57, re, ha='center', va='top', fontsize=8, color='#444', style='italic') pdf.savefig(fig, bbox_inches='tight') plt.close() # ====================================================== # PAGE 5 - SPECIAL TERMS (Cranial/Caudal/Rostral + Superficial/Deep) # ====================================================== fig, ax = plt.subplots(figsize=(11, 8.5)) fig.patch.set_facecolor(BG); ax.set_facecolor(BG) ax.set_xlim(0, 10); ax.set_ylim(0, 9) ax.axis('off') ax.text(5, 8.65, '3b. SPECIAL DIRECTIONAL TERMS', ha='center', fontsize=16, fontweight='bold', color=C_HEADER) # --- Left column: Cranial / Caudal / Rostral --- rounded_box(ax, 2.8, 7.8, 4.5, 0.60, 'CRANIAL / CAUDAL / ROSTRAL', C_HEADER, fontsize=11, bold=True) arrow_down(ax, 2.8, 7.5, 7.05) entries_l = [ (2.8, 6.8, 'CRANIAL', C_MAIN, 'Toward the HEAD'), (2.8, 5.9, 'CAUDAL', C_GREEN, 'Toward the TAIL\n(inferior end of spine)'), (2.8, 4.9, 'ROSTRAL', C_PURPLE, 'Toward the NOSE\n(used within head/brain)'), ] for (x, y, term, col, meaning) in entries_l: rounded_box(ax, x, y, 4.2, 0.70, f'{term}\n{meaning}', col, fontsize=10) if (x, y) != entries_l[-1][:2]: arrow_down(ax, x, y - 0.35, y - 0.85) rounded_box(ax, 2.8, 3.85, 4.5, 0.60, '★ Cranial/Caudal = alternatives to Superior/Inferior\n(common in embryology & comparative anatomy)', '#e67e22', textcolor='white', fontsize=8.5) rounded_box(ax, 2.8, 3.05, 4.5, 0.55, '★ Rostral: forebrain is ROSTRAL to hindbrain', '#e67e22', textcolor='white', fontsize=8.5) # --- Right column: Superficial / Deep --- rounded_box(ax, 7.8, 7.8, 4.0, 0.60, 'SUPERFICIAL / DEEP', C_HEADER, fontsize=11, bold=True) arrow_down(ax, 7.8, 7.5, 7.05) rounded_box(ax, 7.8, 6.8, 3.8, 0.70, 'SUPERFICIAL\nCloser to BODY SURFACE', C_TEAL, fontsize=10) ax.text(7.8, 6.23, 'e.g. sternum is superficial to heart', ha='center', fontsize=8.5, color='#444', style='italic') arrow_down(ax, 7.8, 6.1, 5.55) rounded_box(ax, 7.8, 5.25, 3.8, 0.70, 'DEEP\nFarther from BODY SURFACE\n(inside deep fascia)', C_RED, fontsize=10) ax.text(7.8, 4.68, 'e.g. stomach is deep to abdominal wall', ha='center', fontsize=8.5, color='#444', style='italic') rounded_box(ax, 7.8, 3.85, 4.2, 0.95, 'SUPERFICIAL REGION includes:\nSkin • Superficial fascia • Mammary glands', C_ACCENT, fontsize=9) rounded_box(ax, 7.8, 2.85, 4.2, 0.65, 'DEEP REGION includes:\nMost skeletal muscles • Viscera', '#5b9bd5', fontsize=9) arrow_down(ax, 7.8, 4.35, 3.18) pdf.savefig(fig, bbox_inches='tight') plt.close() # ====================================================== # PAGE 6 - INCLUSIVE TERMINOLOGY # ====================================================== fig, ax = plt.subplots(figsize=(11, 8.5)) fig.patch.set_facecolor(BG); ax.set_facecolor(BG) ax.set_xlim(0, 10); ax.set_ylim(0, 9) ax.axis('off') ax.text(5, 8.65, '4. INCLUSIVE ANATOMICAL TERMINOLOGY', ha='center', fontsize=16, fontweight='bold', color=C_HEADER) ax.text(5, 8.2, 'Modern anatomy acknowledges not all individuals fit a sex-binary model', ha='center', fontsize=10, color='#555', style='italic') rounded_box(ax, 5, 7.5, 7.5, 0.65, 'INCLUSIVE ANATOMICAL NOMENCLATURE', C_HEADER, fontsize=13, bold=True) arrow_down(ax, 5, 7.17, 6.75) rounded_box(ax, 5, 6.45, 7.5, 0.65, 'Includes terms for transgender & non-binary individuals', C_MAIN, fontsize=10) arrow_down(ax, 5, 6.12, 5.7) rounded_box(ax, 5, 5.4, 7.5, 0.65, 'Preferred Clinical Approach', C_GREEN, fontsize=10, bold=True) arrow_down(ax, 5, 5.07, 4.65) # two sub-boxes rounded_box(ax, 2.8, 4.3, 4.5, 0.60, 'Use the PATIENT\'S preferred\nanatomical terminology', C_TEAL, fontsize=9.5) rounded_box(ax, 7.2, 4.3, 4.5, 0.60, 'Base care on PRESENT ANATOMY,\nnot gender identity assumptions', C_PURPLE, fontsize=9.5) ax.plot([5, 2.8], [4.65, 4.60], color='#888', lw=1.5) ax.plot([5, 7.2], [4.65, 4.60], color='#888', lw=1.5) # table of inclusive terms arrow_down(ax, 5, 4.0, 3.6) rounded_box(ax, 5, 3.3, 7.5, 0.55, 'EXAMPLES OF INCLUSIVE TERMS', C_ORANGE, fontsize=11, bold=True) headers = ['Inclusive Term', 'Instead of'] rows = [ ('Upper body', 'Chest / Breast'), ('Erectile tissue', 'Penis / Clitoris'), ('Gonads', 'Testes / Ovaries'), ] col_xs = [3.1, 6.9] y_start = 2.85 # header row for i, h in enumerate(headers): rounded_box(ax, col_xs[i], y_start, 3.0, 0.45, h, C_MAIN, fontsize=10, bold=True) for r_i, (inc, std) in enumerate(rows): yy = y_start - 0.6 * (r_i + 1) bg = '#d9eaf7' if r_i % 2 == 0 else '#eaf4fb' rounded_box(ax, col_xs[0], yy, 3.0, 0.48, inc, bg, textcolor=C_HEADER, fontsize=10) rounded_box(ax, col_xs[1], yy, 3.0, 0.48, std, bg, textcolor=C_HEADER, fontsize=10) pdf.savefig(fig, bbox_inches='tight') plt.close() # ====================================================== # PAGE 7 - SUMMARY FLOWCHART # ====================================================== fig, ax = plt.subplots(figsize=(11, 8.5)) fig.patch.set_facecolor(BG); ax.set_facecolor(BG) ax.set_xlim(0, 10); ax.set_ylim(0, 9) ax.axis('off') ax.text(5, 8.65, 'SUMMARY: ALL KEY TERMS', ha='center', fontsize=16, fontweight='bold', color=C_HEADER) terms = [ # col1 [('Anterior / Ventral', 'Front', C_MAIN), ('Posterior / Dorsal', 'Back', C_RED), ('Superior', 'Above / toward head', C_ACCENT), ('Inferior', 'Below / toward feet', C_ORANGE), ('Medial', 'Toward midline', C_GREEN), ('Lateral', 'Away from midline', C_PURPLE), ('Proximal', 'Closer to origin', C_TEAL), ('Distal', 'Farther from origin', '#c0392b'), ('Cranial', 'Toward head', '#2980b9'), ('Caudal', 'Toward tail', '#27ae60'), ('Rostral', 'Toward nose (head)', '#8e44ad'), ('Superficial', 'Toward body surface', '#16a085'), ('Deep', 'Away from body surface', '#d35400'), ], ] # Planes on right planes_sum = [ ('Coronal plane', 'Divides front & back', C_MAIN), ('Sagittal plane', 'Divides left & right', C_GREEN), ('Transverse plane', 'Divides top & bottom', C_ORANGE), ] row_h = 0.58 y0 = 8.15 col_x = [1.9, 5.4] # term, meaning # header rounded_box(ax, 1.9, y0, 2.4, 0.48, 'TERM', C_HEADER, fontsize=11, bold=True) rounded_box(ax, 5.2, y0, 3.6, 0.48, 'MEANING', C_HEADER, fontsize=11, bold=True) for i, (term, meaning, col) in enumerate(terms[0]): yy = y0 - row_h * (i + 1) bg = '#d9eaf7' if i % 2 == 0 else '#eaf4fb' rounded_box(ax, 1.9, yy, 2.4, 0.46, term, col, fontsize=9) rounded_box(ax, 5.2, yy, 3.6, 0.46, meaning, bg, textcolor=C_HEADER, fontsize=9) # planes box on right side at bottom ax.text(8.7, 4.9, 'PLANES', ha='center', fontsize=11, fontweight='bold', color=C_HEADER) for j, (pl, m, c) in enumerate(planes_sum): yy = 4.5 - j * 0.85 rounded_box(ax, 8.7, yy, 2.3, 0.60, f'{pl}\n{m}', c, fontsize=8.5) pdf.savefig(fig, bbox_inches='tight') plt.close() print("PDF created successfully!") PYEOF echo "Script written."

cd /home/daytona/workspace/anatomical-flowcharts && python3 make_flowcharts.py

ls -lh /home/daytona/workspace/anatomical-flowcharts/