Heparin MOA

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Heparin — Mechanism of Action

Structure

Heparin is a sulfated polysaccharide (heterogeneous mixture of sulfated mucopolysaccharides) isolated from mammalian mast cell-rich tissues — most commercial preparations come from porcine intestinal mucosa. It is a polymer of alternating D-glucuronic acid and N-acetyl-D-glucosamine residues, with a molecular weight range of 5,000–30,000 Da (unfractionated heparin, UFH).

Core MOA — Antithrombin Activation

Heparin's anticoagulant effect is entirely dependent on antithrombin (AT, formerly antithrombin III), an endogenous serine protease inhibitor (serpin) synthesized in the liver.
  1. Pentasaccharide binding: Heparin binds to antithrombin via a unique pentasaccharide sequence present on only ~1/3 of the chains in commercial UFH preparations. Chains lacking this sequence have little or no anticoagulant activity.
  2. Conformational change: Binding induces a conformational change in the reactive center loop of antithrombin, making it more accessible to target proteases.
  3. Accelerated protease inhibition: Antithrombin normally inhibits clotting proteases slowly. Heparin accelerates this reaction ≥1,000-fold.
  4. Cofactor recycling: Heparin is not consumed — once the antithrombin-protease complex forms, heparin is released intact to activate more antithrombin.

Factors Inhibited

FactorMechanism Required
Thrombin (IIa)Heparin must bind both antithrombin and thrombin simultaneously (bridging) → requires longer chains (≥18 saccharide units)
Factor XaHeparin needs only to bind antithrombin (conformational change sufficient); shorter chains work
Factors IXa, XIa, XIIaAlso inhibited, but less clinically prominent
This difference explains why LMWH (short chains) inhibits Xa >> IIa, while UFH inhibits both equally.

UFH vs LMWH vs Fondaparinux

DrugChain LengthAnti-Xa : Anti-IIa ratio
UFH5,000–30,000 Da~1:1
LMWH (e.g., enoxaparin, dalteparin)~4,000–5,000 Da~2–4:1 (mostly Xa)
FondaparinuxSynthetic pentasaccharide onlyXa only (no anti-IIa activity)

Monitoring

UFH is monitored with aPTT (therapeutic range ~60–100 s, or 1.5–2.5× control). Anti-Xa levels can also be used (therapeutic 0.3–0.7 units/mL).

Reversal

Protamine sulfate — a basic polypeptide that binds heparin with high affinity, forming an inactive complex. 1 mg protamine neutralizes ~100 units of heparin.

Key Adverse Effects

  • HIT (Heparin-Induced Thrombocytopenia): IgG antibodies form against heparin-PF4 complexes → platelet Fc receptor activation → platelet microparticles → paradoxical thrombosis. Occurs 5–14 days after initiation.
  • Bleeding (major dose-dependent risk)
  • Elevated liver transaminases (transient, reversible)

— Harrison's Principles of Internal Medicine, 22E; Katzung's Basic and Clinical Pharmacology, 16th Ed.
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