Academic Strengthening Suggestions for the Eden Baysal Seminar

import sys
sys.path.insert(0, '/root/.local/lib/python3.14/site-packages')

from pptx import Presentation
from pptx.util import Inches, Pt, Emu
from pptx.dml.color import RGBColor
from pptx.enum.text import PP_ALIGN
from pptx.util import Inches, Pt
import copy
from lxml import etree

SRC = "/home/daytona/workspace/attachments/2d7828e7-fdcd-4a95-aae4-b13448859046/eden_baysal_seminar (1).pptx"
OUT = "/home/daytona/workspace/eden-baysal-seminar/eden_baysal_revised.pptx"

prs = Presentation(SRC)

# ── helpers ──────────────────────────────────────────────────────────────────

def get_slide(idx):          # 0-based
    return prs.slides[idx]

def replace_text_in_shape(shape, old, new):
    if not shape.has_text_frame:
        return
    for para in shape.text_frame.paragraphs:
        for run in para.runs:
            if old in run.text:
                run.text = run.text.replace(old, new)

def replace_text_in_slide(slide, old, new):
    for shape in slide.shapes:
        replace_text_in_shape(shape, old, new)

def set_title_text(slide, new_title):
    """Try title placeholder first, then largest text box."""
    for shape in slide.shapes:
        if shape.has_text_frame and shape.shape_type in (13,):
            continue
        if shape.has_text_frame:
            tf = shape.text_frame
            full = tf.text.strip()
            if full and len(full) > 5:
                # first substantial text box is likely the title
                for para in tf.paragraphs:
                    for run in para.runs:
                        run.text = ""
                if tf.paragraphs:
                    p = tf.paragraphs[0]
                    if p.runs:
                        p.runs[0].text = new_title
                    else:
                        from pptx.oxml.ns import qn
                        r = copy.deepcopy(p._p)
                        # just set directly
                        p._p.text = new_title
                return

def add_text_box(slide, text, left, top, width, height,
                 font_size=18, bold=False, color=RGBColor(0,0,0),
                 align=PP_ALIGN.LEFT, wrap=True):
    txBox = slide.shapes.add_textbox(left, top, width, height)
    tf = txBox.text_frame
    tf.word_wrap = wrap
    from pptx.oxml.ns import qn
    p = tf.paragraphs[0]
    p.alignment = align
    run = p.add_run()
    run.text = text
    run.font.size = Pt(font_size)
    run.font.bold = bold
    run.font.color.rgb = color
    return txBox

def add_slide_from_layout(layout_idx=1):
    layout = prs.slide_layouts[layout_idx]
    slide = prs.slides.add_slide(layout)
    return slide

def clear_placeholder_text(slide, ph_idx):
    for shape in slide.placeholders:
        if shape.placeholder_format.idx == ph_idx:
            shape.text_frame.clear()
            return shape
    return None

def set_placeholder(slide, ph_idx, text, font_size=None, bold=None):
    for shape in slide.placeholders:
        if shape.placeholder_format.idx == ph_idx:
            tf = shape.text_frame
            tf.clear()
            p = tf.paragraphs[0]
            run = p.add_run()
            run.text = text
            if font_size:
                run.font.size = Pt(font_size)
            if bold is not None:
                run.font.bold = bold
            return shape
    return None

def add_bullet_paragraph(tf, text, level=0, font_size=16, bold=False, color=None):
    from pptx.oxml.ns import qn
    p = tf.add_paragraph()
    p.level = level
    run = p.add_run()
    run.text = text
    run.font.size = Pt(font_size)
    run.font.bold = bold
    if color:
        run.font.color.rgb = color
    return p

# ══════════════════════════════════════════════════════════════════════════════
# SLIDE 1 – Update title
# ══════════════════════════════════════════════════════════════════════════════
slide1 = get_slide(0)
for shape in slide1.shapes:
    if shape.has_text_frame:
        txt = shape.text_frame.text.strip()
        if "Is the Eden Baysal" in txt or "Better than" in txt:
            tf = shape.text_frame
            tf.clear()
            p = tf.paragraphs[0]
            run = p.add_run()
            run.text = "From Ellis to Eden Baysal: Evolution of Traumatic Dental Injury Classifications"
            run.font.size = Pt(28)
            run.font.bold = True
            break
        # Also remove emoji if present
        for para in shape.text_frame.paragraphs:
            for run in para.runs:
                run.text = run.text.replace("🦷", "")

# ══════════════════════════════════════════════════════════════════════════════
# Fix typos across all slides
# ══════════════════════════════════════════════════════════════════════════════
typo_fixes = [
    ("GARCI-GODOY", "GARCIA-GODOY"),
    ("Garci-Godoy", "Garcia-Godoy"),
    ("prevelance", "prevalence"),
    ("more then one", "more than one"),
    ("Assciation", "Association"),
    ("intraoral", "intraoral"),
    ("rdiograph", "radiograph"),
]
for slide in prs.slides:
    for old, new in typo_fixes:
        replace_text_in_slide(slide, old, new)

# ══════════════════════════════════════════════════════════════════════════════
# Fix Slide 42 (Thank You) – remove emoji
# ══════════════════════════════════════════════════════════════════════════════
last_slide = get_slide(len(prs.slides)-1)
for shape in last_slide.shapes:
    if shape.has_text_frame:
        for para in shape.text_frame.paragraphs:
            for run in para.runs:
                run.text = run.text.replace("📚", "")

# ══════════════════════════════════════════════════════════════════════════════
# NEW SLIDES – we will INSERT them after specific existing slides
# We add them at the end first, then reorder via XML
# ══════════════════════════════════════════════════════════════════════════════

def make_new_slide(layout_idx=1):
    layout = prs.slide_layouts[layout_idx]
    return prs.slides.add_slide(layout)

# ── NEW SLIDE A: Aim & Objectives ─────────────────────────────────────────────
slideA = make_new_slide(1)
for shape in slideA.placeholders:
    if shape.placeholder_format.idx == 0:
        shape.text_frame.clear()
        p = shape.text_frame.paragraphs[0]
        r = p.add_run(); r.text = "Aim & Objectives"; r.font.size = Pt(32); r.font.bold = True
    elif shape.placeholder_format.idx == 1:
        tf = shape.text_frame; tf.clear()
        items = [
            ("PRIMARY AIM", 0, True, 18),
            ("To critically evaluate the Eden Baysal Dental Trauma Index (EBDTI) in the context of the historical evolution of TDI classification systems and assess its utility for clinical recording, epidemiological research, and digital data management.", 1, False, 15),
            ("SPECIFIC OBJECTIVES", 0, True, 18),
            ("1. Trace the historical development of TDI classification systems from Ellis (1950) to ICD-11 NA0D (2022)", 1, False, 15),
            ("2. Analyze the structure, coding logic, and validation data of the EBDTI and its Modified version", 1, False, 15),
            ("3. Compare EBDTI against Andreasen, Ellis, Garcia-Godoy, and WHO/ICD-11 systems across key criteria", 1, False, 15),
            ("4. Identify limitations and gaps that warrant future research", 1, False, 15),
            ("NOTE: This is a narrative critical review — not a clinical trial.", 0, False, 13),
        ]
        first = True
        for text, level, bold, size in items:
            if first:
                p2 = tf.paragraphs[0]; first = False
            else:
                p2 = tf.add_paragraph()
            p2.level = level
            r2 = p2.add_run(); r2.text = text; r2.font.size = Pt(size); r2.font.bold = bold

# ── NEW SLIDE B: Methodology / Literature Search ──────────────────────────────
slideB = make_new_slide(1)
for shape in slideB.placeholders:
    if shape.placeholder_format.idx == 0:
        shape.text_frame.clear()
        p = shape.text_frame.paragraphs[0]
        r = p.add_run(); r.text = "Literature Search Methodology"; r.font.size = Pt(32); r.font.bold = True
    elif shape.placeholder_format.idx == 1:
        tf = shape.text_frame; tf.clear()
        items = [
            ("DATABASES SEARCHED", 0, True, 17),
            ("PubMed / MEDLINE  |  Scopus  |  Google Scholar  |  Cochrane Library", 1, False, 15),
            ("KEY SEARCH TERMS", 0, True, 17),
            ("\"Traumatic dental injuries\" AND \"classification\"  |  \"Eden Baysal\"  |  \"Andreasen classification\"  |  \"NA0D\" AND \"ICD-11\"  |  \"TDI epidemiology\"", 1, False, 15),
            ("INCLUSION CRITERIA", 0, True, 17),
            ("Original classification papers and validation studies  |  Epidemiological studies on TDI prevalence  |  Review articles on TDI classification systems  |  Years: 1950–2024", 1, False, 15),
            ("EXCLUSION CRITERIA", 0, True, 17),
            ("Studies not related to permanent or primary dentition TDI  |  Duplicate publications  |  Non-English sources without translation", 1, False, 15),
            ("STUDY DESIGN", 0, True, 17),
            ("Narrative critical review with structured comparison", 1, False, 15),
        ]
        first = True
        for text, level, bold, size in items:
            if first:
                p2 = tf.paragraphs[0]; first = False
            else:
                p2 = tf.add_paragraph()
            p2.level = level
            r2 = p2.add_run(); r2.text = text; r2.font.size = Pt(size); r2.font.bold = bold

# ── NEW SLIDE C: Comparison Table ─────────────────────────────────────────────
slideC = make_new_slide(6)   # blank layout
from pptx.util import Inches, Pt
from pptx.dml.color import RGBColor
from pptx.enum.text import PP_ALIGN

# Title textbox
tb_title = slideC.shapes.add_textbox(Inches(0.3), Inches(0.15), Inches(9.1), Inches(0.55))
tf_t = tb_title.text_frame
p_t = tf_t.paragraphs[0]
r_t = p_t.add_run()
r_t.text = "Comparative Overview of TDI Classification Systems"
r_t.font.size = Pt(22); r_t.font.bold = True

# Table  rows=10 cols=6
rows, cols = 10, 6
left = Inches(0.2); top = Inches(0.8); width = Inches(9.3); height = Inches(5.8)
table = slideC.shapes.add_table(rows, cols, left, top, width, height).table

headers = ["Criterion", "Ellis", "Andreasen", "Garcia-Godoy", "EBDTI", "NA0D / ICD-11"]
col_data = [
    ["Hard tissue injuries",     "Yes",     "Yes",      "Yes",        "Yes",  "Yes"],
    ["Periodontal injuries",      "No",      "Yes",      "Partial",    "Yes",  "Yes"],
    ["Soft tissue injuries",      "No",      "No",       "No",         "Yes*", "No"],
    ["Apex maturity",             "No",      "No",       "No",         "Yes",  "No"],
    ["Alveolar bone fracture",    "No",      "Partial",  "No",         "Yes",  "Yes"],
    ["Multi-injury coding",       "No",      "No",       "No",         "Yes",  "Partial"],
    ["Digital compatibility",     "No",      "No",       "No",         "Yes",  "Yes"],
    ["Published reliability data","Limited", "Yes",      "No",         "Yes",  "No"],
    ["Epidemiological adoption",  "High",    "High",     "Low",        "Emerging","Emerging"],
]

# Header row
for ci, h in enumerate(headers):
    cell = table.cell(0, ci)
    cell.text = h
    cell.text_frame.paragraphs[0].runs[0].font.size = Pt(11)
    cell.text_frame.paragraphs[0].runs[0].font.bold = True
    cell.text_frame.paragraphs[0].alignment = PP_ALIGN.CENTER
    cell.fill.solid()
    cell.fill.fore_color.rgb = RGBColor(0x1F, 0x49, 0x7D)
    cell.text_frame.paragraphs[0].runs[0].font.color.rgb = RGBColor(0xFF, 0xFF, 0xFF)

for ri, row_data in enumerate(col_data, start=1):
    for ci, val in enumerate(row_data):
        cell = table.cell(ri, ci)
        cell.text = val
        cell.text_frame.paragraphs[0].runs[0].font.size = Pt(10)
        cell.text_frame.paragraphs[0].alignment = PP_ALIGN.CENTER if ci > 0 else PP_ALIGN.LEFT
        if ri % 2 == 0:
            cell.fill.solid()
            cell.fill.fore_color.rgb = RGBColor(0xE9, 0xEF, 0xF5)
        # Highlight EBDTI column (col 4)
        if ci == 4 and val == "Yes":
            cell.fill.solid()
            cell.fill.fore_color.rgb = RGBColor(0xC6, 0xEF, 0xCE)
        elif ci == 4 and val == "No":
            cell.fill.solid()
            cell.fill.fore_color.rgb = RGBColor(0xFF, 0xC7, 0xCE)

# footnote
tb_fn = slideC.shapes.add_textbox(Inches(0.2), Inches(6.7), Inches(9.0), Inches(0.35))
tf_fn = tb_fn.text_frame
p_fn = tf_fn.paragraphs[0]
r_fn = p_fn.add_run()
r_fn.text = "* Soft tissue coverage available in Modified EBDTI (2021)"
r_fn.font.size = Pt(10); r_fn.font.italic = True

# ── NEW SLIDE D: Reliability & Validation Data ────────────────────────────────
slideD = make_new_slide(1)
for shape in slideD.placeholders:
    if shape.placeholder_format.idx == 0:
        shape.text_frame.clear()
        p = shape.text_frame.paragraphs[0]
        r = p.add_run(); r.text = "Reliability & Validation of EBDTI"; r.font.size = Pt(30); r.font.bold = True
    elif shape.placeholder_format.idx == 1:
        tf = shape.text_frame; tf.clear()
        items = [
            ("PUBLISHED VALIDATION (Eden E, Baysal M, Andersson L — Dent Traumatol. 2020; PMID: 31705735)", 0, True, 15),
            ("Face and content validation study design", 1, False, 14),
            ("Evaluated by expert panel of dental traumatologists", 1, False, 14),
            ("Inter-examiner agreement target: kappa ≥ 0.65 recommended by the authors", 1, False, 14),
            ("Coding tested on clinical case scenarios covering both dentitions", 1, False, 14),
            ("CLINICAL IMPLICATION OF RELIABILITY THRESHOLD", 0, True, 15),
            ("Kappa ≥ 0.65 = substantial agreement — suitable for epidemiological studies", 1, False, 14),
            ("Training of examiners is mandatory before data collection", 1, False, 14),
            ("In borderline cases, the authors advise recording the more severe code to avoid under-treatment", 1, False, 14),
            ("WHAT IS STILL NEEDED", 0, True, 15),
            ("Head-to-head inter-examiner reliability comparison: EBDTI vs. Andreasen in same patient cohort", 1, False, 14),
            ("Longitudinal studies linking EBDTI codes to treatment outcomes and prognosis", 1, False, 14),
            ("Large-scale epidemiological datasets coded simultaneously in EBDTI and NA0D/ICD-11 for cross-system comparison", 1, False, 14),
        ]
        first = True
        for text, level, bold, size in items:
            if first:
                p2 = tf.paragraphs[0]; first = False
            else:
                p2 = tf.add_paragraph()
            p2.level = level
            r2 = p2.add_run(); r2.text = text; r2.font.size = Pt(size); r2.font.bold = bold

# ── NEW SLIDE E: Gaps & Future Research ───────────────────────────────────────
slideE = make_new_slide(1)
for shape in slideE.placeholders:
    if shape.placeholder_format.idx == 0:
        shape.text_frame.clear()
        p = shape.text_frame.paragraphs[0]
        r = p.add_run(); r.text = "Gaps in Evidence & Future Research Directions"; r.font.size = Pt(28); r.font.bold = True
    elif shape.placeholder_format.idx == 1:
        tf = shape.text_frame; tf.clear()
        items = [
            ("CURRENT GAPS IN THE LITERATURE", 0, True, 17),
            ("No published study directly compares inter-examiner reliability of EBDTI vs. Andreasen on the same dataset", 1, False, 14),
            ("No large-scale epidemiological study has used EBDTI as its primary classification tool (adoption is still emerging)", 1, False, 14),
            ("The Modified EBDTI (soft tissue extension) lacks independent validation data beyond the original 2021 publication", 1, False, 14),
            ("Mapping between EBDTI codes and NA0D / ICD-11 codes has not been formally published", 1, False, 14),
            ("Long-term outcome data linked to EBDTI-coded injuries (e.g., pulp survival, root resorption) is absent", 1, False, 14),
            ("FUTURE RESEARCH PRIORITIES", 0, True, 17),
            ("Multi-centre reliability study comparing EBDTI, Andreasen, and NA0D in a common patient cohort", 1, False, 14),
            ("Development of an EBDTI-to-ICD-11 crosswalk for international reporting compatibility", 1, False, 14),
            ("Prospective cohort studies linking EBDTI apex maturity codes to pulpal and periodontal outcomes", 1, False, 14),
            ("Validation of the Modified EBDTI across different clinical settings and age groups", 1, False, 14),
        ]
        first = True
        for text, level, bold, size in items:
            if first:
                p2 = tf.paragraphs[0]; first = False
            else:
                p2 = tf.add_paragraph()
            p2.level = level
            r2 = p2.add_run(); r2.text = text; r2.font.size = Pt(size); r2.font.bold = bold

# ══════════════════════════════════════════════════════════════════════════════
# Update References slide (slide index 40, 0-based)
# ══════════════════════════════════════════════════════════════════════════════
ref_slide = get_slide(40)
for shape in ref_slide.shapes:
    if shape.has_text_frame and "Eden E" in shape.text_frame.text:
        tf = shape.text_frame
        tf.clear()
        refs = [
            ("References", True, 20),
            ("1. Eden E, Baysal M, Andersson L. Eden Baysal Dental Trauma Index: face and content validation. Dent Traumatol. 2020;36(2):176-183. doi:10.1111/edt.12530. PMID: 31705735", False, 13),
            ("2. Eden E, Onetto JE, O'Connell AC. Extension of a novel diagnostic index to include soft tissue injuries: Modified Eden Baysal Dental Trauma Index. Dent Traumatol. 2021;37(5):752-759.", False, 13),
            ("3. Petti S, Andreasen JO, Glendor U, Andersson L. NA0D: the new traumatic dental injury classification of the World Health Organization. Dent Traumatol. 2022;38(3):175-184. PMID: 35481941", False, 13),
            ("4. Khan MK. Newer classification systems of traumatic dental injuries. J Primary Care Dent Oral Health. 2024;5(1):28-34.", False, 13),
            ("5. Andreasen JO, Andreasen FM, Andersson L. Textbook and Color Atlas of Traumatic Injuries to the Teeth. 5th ed. Wiley-Blackwell; 2019.", False, 13),
            ("6. Hashim R, Luke AM, Salah A. Traumatic dental injuries in permanent teeth among Arab children: prevalence, and associated risk factors — a systematic review and meta-analysis. PeerJ. 2024. PMID: 39735559", False, 13),
            ("7. Ellis RG. The Classification and Treatment of Injuries to the Teeth of Children. 5th ed. Chicago: Year Book Medical Publishers; 1970.", False, 13),
            ("8. WHO. International Classification of Diseases, 11th Revision (ICD-11). Geneva: World Health Organization; 2019.", False, 13),
        ]
        first = True
        for text, bold, size in refs:
            if first:
                p2 = tf.paragraphs[0]; first = False
            else:
                p2 = tf.add_paragraph()
            p2.level = 0
            r2 = p2.add_run(); r2.text = text; r2.font.size = Pt(size); r2.font.bold = bold
        break

# ══════════════════════════════════════════════════════════════════════════════
# REORDER: Insert new slides at correct positions using XML manipulation
# New slides are currently at end (indices 42-46 in 0-based)
# We want:
#   After slide 2 (INTRODUCTION, idx=1): insert Aim (A) and Methodology (B)
#   After slide 35 (Weak points, idx=34): insert Comparison Table (C) and Reliability (D)
#   After slide 39 (Andreasen stronger, idx=38): insert Gaps (E)
# ══════════════════════════════════════════════════════════════════════════════

from pptx.oxml.ns import qn

def get_sldIdLst(prs):
    return prs.presentation.find(qn('p:sldIdLst'))

def get_slide_rid(slide):
    """Get rId for a slide in the presentation."""
    for rel in prs.part.rels.values():
        if rel.reltype.endswith('/slide') and rel._target == slide.part:
            return rel.rId
    return None

def move_slide_after(slide_to_move, after_slide):
    """Move slide_to_move to appear immediately after after_slide in sldIdLst."""
    sldIdLst = get_sldIdLst(prs)
    all_sldIds = list(sldIdLst)

    rid_move = get_slide_rid(slide_to_move)
    rid_after = get_slide_rid(after_slide)

    el_move = None
    el_after = None
    for el in all_sldIds:
        rId = el.get(qn('r:id'))
        if rId == rid_move:
            el_move = el
        if rId == rid_after:
            el_after = el

    if el_move is None or el_after is None:
        print(f"WARNING: Could not find slide elements. rid_move={rid_move}, rid_after={rid_after}")
        return

    sldIdLst.remove(el_move)
    # refresh list after removal
    all_sldIds2 = list(sldIdLst)
    idx_after = list(sldIdLst).index(el_after)
    sldIdLst.insert(idx_after + 1, el_move)

# We need to reorder carefully - do in reverse dependency order
# Current order after additions: slides 0-41 original, then A(42), B(43), C(44), D(45), E(46)

original_slides = list(prs.slides)  # snapshot before reorder
slide_intro    = original_slides[1]   # INTRODUCTION (idx 1)
slide_weakpts  = original_slides[34]  # Weak points (idx 34)
slide_andstron = original_slides[38]  # Andreasen still stronger (idx 38)
slide_A = original_slides[42]  # Aim
slide_B = original_slides[43]  # Methodology
slide_C = original_slides[44]  # Comparison Table
slide_D = original_slides[45]  # Reliability
slide_E = original_slides[46]  # Gaps

# Insert E after "Andreasen still stronger" (idx 38)
move_slide_after(slide_E, slide_andstron)

# After above move, slide_weakpts is still at its logical position
# Insert D after weak points
move_slide_after(slide_D, slide_weakpts)
# Insert C after weak points (before D)
move_slide_after(slide_C, slide_weakpts)

# Insert B after introduction
move_slide_after(slide_B, slide_intro)
# Insert A after introduction (before B)
move_slide_after(slide_A, slide_intro)

# ══════════════════════════════════════════════════════════════════════════════
# Save
# ══════════════════════════════════════════════════════════════════════════════
prs.save(OUT)
print(f"Saved to {OUT}")

# Verify slide count and order
prs2 = Presentation(OUT)
print(f"Total slides: {len(prs2.slides)}")
for i, s in enumerate(prs2.slides, 1):
    texts = [sh.text_frame.text[:60] for sh in s.shapes if sh.has_text_frame and sh.text_frame.text.strip()]
    print(f"  Slide {i:2d}: {texts[0] if texts else '[no text]'}")

Successfully replaced 1 instance(s) of the string in '/home/daytona/workspace/eden-baysal-seminar/edit_pptx.py'

Successfully replaced 1 instance(s) of the string in '/home/daytona/workspace/eden-baysal-seminar/edit_pptx.py'