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Urine Analysis (Urinalysis) - Pathology Practical
Urine analysis is one of the most fundamental investigations in clinical pathology. It is non-invasive, cost-effective, and can reveal diseases of the kidney, urinary tract, and even systemic disorders. The routine urinalysis has four components: specimen evaluation, physical (gross) examination, chemical (reagent strip) examination, and microscopic examination of urinary sediment.
1. Specimen Collection & Evaluation
Before any examination, proper specimen collection is essential:
- Best specimen: First-voided morning urine (most concentrated, best for protein, cells, casts)
- Mid-stream clean catch: Reduces contamination; used for routine analysis and culture
- Volume needed: 10-15 mL for centrifugation
- Timing: Examine within 1-2 hours of collection; refrigerate if delayed (prevents bacterial overgrowth and cell lysis)
- 24-hour urine: Used for quantitative protein, creatinine clearance
Evaluate the container for labeling, leakage, and time of collection before proceeding.
2. Physical (Gross) Examination
Color
| Color | Possible Cause |
|---|
| Pale yellow / Straw | Normal, dilute urine |
| Dark yellow / Amber | Concentrated urine, dehydration |
| Red / Pink | Hematuria, hemoglobinuria, myoglobinuria, beets, rifampicin |
| Brown / Tea-colored | Old blood (acid hematin), myoglobin, bile pigments |
| Orange | Bilirubin, pyridium (phenazopyridine) |
| Green / Blue | Biliverdin, Pseudomonas infection, methylene blue |
| Milky white | Pyuria (pus), chyluria, phosphaturia |
| Black | Alkaptonuria (homogentisic acid), melanoma |
Normal urine is pale to dark yellow due to urochrome pigment.
Clarity / Turbidity
- Clear: Normal
- Turbid / Cloudy: Indicates cells (RBCs, WBCs), casts, crystals, bacteria, mucus, or lipids
- Method: Assessed by reading newsprint through the specimen in a tube
Odor
| Odor | Cause |
|---|
| Ammoniacal | Bacterial decomposition (old urine) |
| Fruity / Sweet | Ketones (diabetic ketoacidosis, starvation) |
| Foul / Fishy | Urinary tract infection |
| Maple syrup | Maple syrup urine disease (MSUD) |
| Musty / Mousy | Phenylketonuria (PKU) |
Volume (24 hours)
- Normal: 1,000-1,500 mL/day
- Polyuria: >2,500 mL/day (diabetes mellitus/insipidus, chronic renal failure)
- Oliguria: <400 mL/day (dehydration, acute renal failure, shock)
- Anuria: <100 mL/day (complete obstruction, severe renal failure)
3. Chemical (Reagent Strip / Dipstick) Examination
The reagent strip (dipstick) tests 10 parameters simultaneously using color-change reactions. Read at the specified time (usually 30-60 seconds); automated strip readers use reflectance photometry to eliminate subjective error.
pH
- Normal: 4.5-8.0 (average ~6.0, slightly acidic)
- Acid urine: High protein diet, acidosis, fever, diabetes, starvation
- Alkaline urine: Vegetarian diet, UTI (urease-producing organisms), renal tubular acidosis, vomiting
Specific Gravity (SG)
- Normal: 1.003-1.030
- Reflects kidney concentrating ability (also measured by refractometry or urinometer)
- Low SG (<1.010): Dilute urine, diabetes insipidus, renal tubular disease
- High SG (>1.020): Concentrated urine, dehydration, glycosuria, proteinuria
- Fixed SG (1.010): Isosthenuria - indicates severe tubular damage (e.g., chronic glomerulonephritis)
Osmolality
- Normal: 300-900 mOsm/kg
- After dehydration, osmolality should be 3-4x plasma osmolality (~285 mOsm/kg)
Protein
- Normal: Trace or negative (<150 mg/day)
- Dipstick: Primarily detects albumin (false negative for Bence-Jones protein - use SSA test)
- Proteinuria >4 g/day: Nephrotic syndrome
- Mild proteinuria: Glomerulonephritis, renal tubular disease, orthostatic proteinuria
- Bence-Jones proteinuria: Multiple myeloma (heat test - precipitates at 45-60°C, dissolves at 100°C)
Heat and Acetic Acid test: Boil urine - if turbid (protein), add acetic acid - if turbidity persists = true proteinuria.
Glucose
- Normal: Negative (trace glucose reabsorbed by tubules)
- Glucosuria appears when blood glucose >180 mg/dL (renal threshold)
- Causes: Diabetes mellitus (most common), Cushing's syndrome, renal glycosuria (normal blood glucose, defective tubular reabsorption), pregnancy
- Dipstick: Glucose oxidase method (specific for glucose only)
- Benedict's test / Fehling's test: Detects all reducing sugars (glucose, fructose, galactose, lactose)
Ketones
- Normal: Negative
- Ketonuria: Diabetic ketoacidosis (DKA), starvation, prolonged vomiting, febrile illness, cachexia
- Rothera's test: Ferric chloride or sodium nitroprusside - gives purple-violet color
- Dipstick: Detects acetoacetate and acetone (not beta-hydroxybutyrate)
Blood (Hematuria / Hemoglobinuria)
- Normal: Negative
- Hematuria: >3 RBCs/HPF - from anywhere in urinary tract (kidney, ureter, bladder, urethra)
- Hemoglobinuria: Intravascular hemolysis (malaria, transfusion reactions, PNH)
- Myoglobinuria: Rhabdomyolysis, crush injury
- Note: Dipstick cannot distinguish between RBCs, hemoglobin, and myoglobin - microscopy differentiates
Bilirubin & Urobilinogen
| Test | Bilirubin | Urobilinogen |
|---|
| Normal | Negative | 0.1-1.0 EU/dL (trace) |
| Hepatocellular jaundice | Positive | Increased |
| Obstructive jaundice | Positive | Absent/decreased |
| Hemolytic jaundice | Negative | Markedly increased |
- Bilirubin: Only conjugated (direct) bilirubin appears in urine
- Gmelin test: For bilirubin (green ring at junction)
- Ehrlich's test: For urobilinogen (cherry red color)
Nitrite
- Positive: Indicates gram-negative bacterial infection (bacteria reduce dietary nitrates to nitrites)
- Used along with leukocyte esterase to screen for UTI
Leukocyte Esterase
- Positive: Indicates pyuria (>5 WBCs/HPF), UTI
- False negative: High specific gravity, high glucose, ascorbic acid
4. Microscopic Examination of Urinary Sediment
Procedure
- Pour 10-15 mL of well-mixed urine into a centrifuge tube
- Centrifuge at 450g for 5 minutes
- Discard supernatant (after first performing physical and chemical tests on it)
- Resuspend sediment in ~0.5 mL remaining supernatant
- Optionally add supravital stain (Sternheimer-Malbin stain or methylene blue)
- Load one drop onto a glass slide, apply coverslip
- Allow to settle for 30-60 seconds
- Examine under reduced/subdued light (or phase-contrast), varying the fine focus
Reporting:
- Casts: Report per low-power field (LPF) - scan at least 10 LPFs
- RBCs, WBCs, epithelial cells: Report per high-power field (HPF) - average 10 HPFs
A. Red Blood Cells (RBCs)
- Normal: 0-2 RBCs/HPF
- Appear as biconcave discs; in dilute urine may swell (ghost cells); in hypertonic urine may shrink (crenated)
- Dysmorphic RBCs (acanthocytes, "Mickey Mouse ears"): Indicate glomerular origin of bleeding (glomerulonephritis) - caused by mechanical damage passing through the GBM
- Isomorphic RBCs: Non-glomerular bleeding (lower urinary tract - cystitis, calculi, tumors)
B. White Blood Cells (WBCs / Pus Cells)
- Normal: 0-5 WBCs/HPF
- Mostly neutrophils (larger than RBCs, granular cytoplasm, multilobed nucleus)
- Pyuria (>5 WBCs/HPF): UTI, pyelonephritis, glomerulonephritis
- Clumps of WBCs ("pus clumps"): Strongly suggest renal origin (pyelonephritis)
- Glitter cells: WBCs with Brownian movement of granules, seen in hypotonic urine
C. Epithelial Cells
| Type | Origin | Significance |
|---|
| Squamous epithelial cells | Urethra, vagina, external genitalia | Usually contaminants; large, flat, irregular cells |
| Transitional (urothelial) cells | Bladder, ureter, renal pelvis | Few normal; many = cystitis, catheterization, or malignancy |
| Renal tubular epithelial (RTE) cells | Renal tubules | >2/HPF is significant; seen in ATN, glomerulonephritis, graft rejection |
| Oval fat bodies | RTE cells with fat droplets | Nephrotic syndrome - appear as "Maltese cross" under polarized light |
D. Casts
Casts are cylindrical structures formed in the lumen of distal tubules/collecting ducts when Tamm-Horsfall mucoprotein precipitates around any formed elements. They indicate intrinsic renal disease.
Favored by: acidic pH, concentrated urine, low flow rate
| Cast Type | Composition | Clinical Significance |
|---|
| Hyaline casts | Pure Tamm-Horsfall protein | Few normal (0-2/LPF); fever, exercise, concentrated urine, mild renal disease |
| RBC (blood) casts | RBCs embedded in protein | Pathognomonic of glomerulonephritis (acute GN, lupus nephritis) |
| WBC (pus) casts | WBCs embedded in protein | Pyelonephritis, interstitial nephritis |
| Granular casts | Degenerated cells / protein aggregates | Renal parenchymal disease (GN, pyelonephritis) |
| Waxy casts | Highly refractile, yellow | Advanced/chronic renal disease, chronic GN, nephrotic syndrome |
| Fatty casts | Fat droplets ("Maltese cross" under polarized light) | Nephrotic syndrome |
| Epithelial casts | RTE cells | ATN, viral infection, graft rejection |
| Broad casts | Any type but wide | Chronic renal failure ("renal failure casts") - form in dilated tubules |
E. Crystals
Normal (in acidic urine):
- Uric acid (yellow-brown rhomboids/rosettes)
- Amorphous urates
- Calcium oxalate (envelope-shaped / "Maltese cross")
Normal (in alkaline urine):
- Triple phosphate (coffin-lid shaped) - struvite stones
- Amorphous phosphates
- Calcium carbonate
Abnormal / Pathological crystals:
| Crystal | Shape | Clinical Significance |
|---|
| Cystine | Hexagonal plates | Cystinuria (only hexagonal crystal in urine) |
| Leucine | Yellow-brown spheres with concentric rings | Liver failure, aminoaciduria |
| Tyrosine | Fine colorless needles | Liver failure, tyrosinemia |
| Cholesterol | Notched rectangles (with "staircase") | Nephrotic syndrome, lipiduria |
| Bilirubin | Needle-like yellow-brown | Liver disease, obstructive jaundice |
Note on kidney stones: 80% are calcium-based (oxalate/phosphate). Uric acid stones in gout.
F. Bacteria, Yeast, Parasites
- Bacteria: If detectable at low power = significant bacteriuria (~100,000 organisms/mL); confirm with culture
- Yeast (Candida): Oval budding cells, may form pseudohyphae; immunocompromised patients, diabetics
- Trichomonas vaginalis: Pear-shaped motile protozoan; STI
- Schistosoma haematobium eggs: Terminal-spined eggs; cause hematuria
- Mucus threads: Long wavy threads; normal in small amounts, not clinically significant
5. Urine Findings in Common Diseases (Summary Table)
| Disease | Physical | Chemical | Microscopy |
|---|
| Acute glomerulonephritis | Smoky/red, turbid | Proteinuria, hematuria | RBC casts, hyaline & granular casts, dysmorphic RBCs, neutrophils |
| Nephrotic syndrome | Frothy, fat droplets | Heavy proteinuria (>4g/day) | Fatty & waxy casts, oval fat bodies, epithelial casts |
| Acute pyelonephritis | Turbid, foul odor | Occasional protein, nitrite+, LE+ | WBC casts, numerous neutrophils in clumps, epithelial casts, bacteria |
| Acute tubular necrosis (ATN) | Hematuria | Mild protein | Epithelial casts, necrotic RTE cells, granular casts |
| Cystitis | Hematuria, turbid | LE+, nitrite+ | Numerous WBCs, RBCs, transitional cells, bacteria |
| Diabetes mellitus | Normal color | Glucose+++, ketones | Usually normal; occasionally glycosuria |
| Renal calculi | Hematuria | Blood+ | RBCs, crystals |
| Chronic renal failure | Pale, fixed SG | Protein | Broad/waxy casts, granular casts |
Practical Tips (Exam Focus)
- Always report casts in LPF and cells in HPF
- RBC casts = glomerulonephritis (most important cast to identify)
- Oval fat bodies under polarized light = Maltese cross = nephrotic syndrome
- Broad casts = chronic renal failure (renal failure casts)
- Cystine crystals (hexagonal) are always pathological
- Bilirubin in urine = conjugated hyperbilirubinemia (conjugated is water-soluble)
- Dysmorphic RBCs (acanthocytes) = glomerular disease
- Dipstick protein test is sensitive for albumin but misses Bence-Jones protein - use SSA test or heat test
- Fixed SG of 1.010 = isosthenuria = severe tubular damage
- Supravital stains (Sternheimer-Malbin): Stain WBCs and RTE cells blue-purple, making them easier to identify
Sources: Henry's Clinical Diagnosis and Management by Laboratory Methods; Tietz Textbook of Laboratory Medicine, 7th Edition