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Suprachiasmatic nucleus (SCN):
The SCN, situated in the anterior hypothalamus above the optic chiasma, acts as the master biological clock of the body.
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Light as the main synchronizer:
Light is the most important external cue or zeitgeber. Light signals from the retina reach the SCN through the retinohypothalamic tract and synchronize the internal clock with the 24-hour light-dark cycle.
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Molecular clock mechanism:
In SCN cells, clock genes such as CLOCK, BMAL1, PER and CRY produce rhythmic changes in gene expression through a transcription-translation feedback loop. This generates an approximately 24-hour cycle.
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Control of body functions:
The SCN coordinates peripheral clocks in various organs by controlling autonomic, endocrine and behavioural functions. Thus it regulates sleep, body temperature, cortisol secretion and feeding pattern.
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Melatonin secretion:
The SCN regulates the pineal gland through sympathetic pathways. Darkness increases melatonin secretion, producing sleepiness; light suppresses melatonin secretion.
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Other modifying factors:
Food intake, exercise, social activity, stress and temperature can also influence circadian rhythm. Disturbance of these rhythms occurs in jet lag and shift work.
Source:
Kandel's Principles of Neural Science, pp. 1136-1137. The role of light, SCN, and melatonin is also consistent with the
NIGMS circadian-rhythm overview.