I now have comprehensive content from Narayan Reddy (The Essentials of FMT, 36th ed.) on DNA Fingerprinting. I have enough to produce a complete, detailed answer. Note: The library does not have a specific "Narayan Reddy" titled book - the The Essentials of Forensic Medicine and Toxicology is authored by K.S. Narayan Reddy, and the 36th edition (2026) is in the library.
DNA Test - Forensic Medicine (Narayan Reddy, 36th Ed.)
Definition
DNA Fingerprinting (also called DNA typing, DNA identification, or genetic typing) is a technique involving chemically dividing the DNA into fragments which form a unique pattern and then matching that "identity profile" with the pattern obtained from similarly testing a suspect's blood specimen.
- Chances of two people having the same sequence: ~1 in 1,000,000,000,000,000 (one million billion)
- Even among siblings: only 1 in 10,000 million
- With recent advances, even identical twins can be differentiated
- Developed by Dr. Alec Jeffreys in 1985 - first used to solve two murder cases
Indications (Applications) - Four Main
| # | Indication | Details |
|---|
| 1 | Identification in criminal cases | Identity of a criminal is determined by comparing the accused person's DNA profile with a biological item (blood or seminal stain) found at the scene of crime. Absolute identification if tests are properly performed. |
| 2 | Sexual offences (Rape) | Seminal fluid in the vagina of a rape/rape-murder victim can be matched against the blood DNA pattern of a suspect. Surpasses blood group secretor tests as it distinguishes between mixed semen and vaginal fluids from a swab. |
| 3 | Disputed paternity / maternity | Provides conclusive proof - an absolute identification rather than merely a probable exclusion. Even sex of a foetus can be determined from foetal cells in maternal blood as early as the 5th week of pregnancy. |
| 4 | Identification of unknown persons / mass disasters | Linking body parts, baby mix-ups, identification of persons with loss of memory, victims of mass disasters, identification of skeletal remains. Can identify physical features (eye colour, appearance) from a skeleton. |
(Other applications: immigration disputes, inheritance/succession, linking decomposed body parts)
Material Used for DNA Testing
DNA is present only in nucleated cells. Suitable materials include:
- Blood (leucocytes - white blood cells)
- Seminal fluid
- Hair with root sheath cells (not hair shaft alone - must have follicle)
- Bone marrow
- Muscle
- Skin
- Brain tissue
- Dental pulp
- Dried stains (blood, semen on clothing)
- Vaginal smear
- Nails
- Tooth pulp
Red blood cells (RBCs) are anucleate and therefore cannot be used for DNA profiling.
DNA Typing - Procedure
Basis
The human genome contains about 6 × 10⁹ DNA molecules per diploid genome. Only ~3% of DNA codes for proteins. The remaining ~97% is "junk DNA" or non-coding regions. Within this non-coding region, certain sequences called Variable Number of Tandem Repeats (VNTRs) - short, highly repetitive sequences - vary enormously between individuals. These are the basis of DNA fingerprinting.
Method 1: RFLP (Restriction Fragment Length Polymorphism) - Classical Method
Step-by-step procedure:
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Extraction: DNA is extracted from biological material (blood, semen, hair root, etc.)
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Restriction Digestion: DNA is cut into fragments using restriction endonucleases (bacterial enzymes that cut DNA at specific sequences). This produces fragments of varying length - the VNTRs create the variation.
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Gel Electrophoresis: The DNA fragments are separated by size by passing an electric current through an agarose gel. Smaller fragments travel further; larger ones stay near the origin.
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Southern Blotting: DNA fragments are transferred from the gel onto a nylon or nitrocellulose membrane (a process called Southern blotting after its inventor E.M. Southern, 1975). The membrane is treated with alkali to denature (separate) the double-stranded DNA into single strands.
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Hybridization with a Probe: A radioactively labelled DNA probe (single-stranded fragment of known DNA sequence complementary to the VNTR sequences) is applied to the membrane. The probe hybridizes (binds) specifically to its complementary VNTR sequences.
- Multilocus Probes (MLPs): Detect variations at several genetic regions simultaneously. Produce a band pattern of 30-40 dark bands on X-ray film.
- Single Locus Probes (SLPs): Analyze only one hypervariable location. Each SLP detects just two bands (one maternal, one paternal).
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Autoradiography: The membrane is exposed to X-ray film. The radioactive probe produces a visible band pattern - the DNA "fingerprint."
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Comparison: The band pattern from the evidence sample is compared with that from the suspect's sample. A match confirms identity.
Indian context: At the Centre for DNA Fingerprinting and Diagnostics (CDFD), Nacharam, Hyderabad, a Bkm probe is used - a multilocus probe isolated from the banded krait (Bungarus fasciatus) snake.
Method 2: PCR (Polymerase Chain Reaction) - Modern Method
Used when very small or degraded biological material is available. A small amount of DNA is amplified more than a million-fold using thermal TAQ polymerase.
Steps:
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DNA Isolation: DNA is isolated from the sample.
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Denaturation (94°C): The sample is heated to >94°C, splitting the double helix into two single strands.
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Annealing (temperature lowered): Primers (short, specific DNA segments) bind to the polymorphic regions of interest on each single strand.
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Extension (72°C): Temperature is raised to 72°C. TAQ polymerase extends the primers, copying both DNA strands and inserting complementary nucleotides (base-pair complementarity maintained).
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Cycling: The cycle is repeated ~30 times, producing more than 1 million copies of the target DNA.
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Detection: Amplification products for VNTR polymorphism are detected by electrophoresis, visualized by fluorescent detection or silver staining.
Advantages of PCR over RFLP:
- Works on minute, degraded samples
- Very sensitive and specific
- Easily automated
- Can analyze 36 samples at a time
- Quicker
Disadvantage of PCR: Less specific than RFLP (higher risk of contamination artefacts)
MLP vs SLP Comparison
| Feature | Multilocus Probe (MLP) | Single Locus Probe (SLP) |
|---|
| Regions analyzed | Multiple simultaneously | One hypervariable location |
| Band pattern | 30-40 bands | 2 bands (1 maternal + 1 paternal) |
| Specificity | Detects DNA in all vertebrates | Human specific |
| Sensitivity | Less than SLP | High - single hair root identifiable |
| Random match probability | 1 in 10¹² | 1 in 10,000 (per SLP, but multiple SLPs used) |
| Current forensic use | Less common | 80% of forensic work |
Disadvantages of RFLP Method
- Samples must be in good condition for analysis
- Requires relatively large amounts of DNA
- Time-consuming
- Cannot be used on degraded or very old samples
Key Facts for Exams
- DNA fingerprinting: invented by Alec Jeffreys, 1985
- Southern blotting: invented by E.M. Southern, 1975
- India's DNA fingerprinting centre: CDFD, Hyderabad (uses Bkm probe from banded krait)
- Accuracy: near 100% (1 in 10¹⁵ chance of false match with MLP)
- RBCs cannot be used (anucleate)
- PCR = amplification method for degraded/small samples
- RFLP = classical restriction enzyme method for good quality samples
Source: The Essentials of Forensic Medicine and Toxicology, 36th Ed. (K.S. Narayan Reddy), Chapter 20, pp. 443-446; Parikh's Textbook of Medical Jurisprudence, p. 522