Histology of brain

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Histology of the Brain

The brain is composed of two major cell populations: neurons (nerve cells) and neuroglia (supporting cells). The cerebral cortex has a distinctive laminated organization. Here is a systematic overview.

1. Neurons - The Structural and Functional Unit

The neuron is the structural and functional unit of the nervous system. The human brain contains more than 10 billion neurons.
Motor neuron diagram showing cell body, dendrites, axon, myelin, oligodendrocyte in CNS and Schwann cells in PNS
Fig 12.1 - Motor neuron structure (CNS and PNS components) - Histology: A Text and Atlas

Classification of Neurons

TypeProcessesLocation/Function
Multipolar1 axon + 2+ dendritesMotor neurons, interneurons - most CNS neurons
Bipolar1 axon + 1 dendriteRetina, vestibulo-cochlear ganglion, olfactory epithelium
PseudounipolarSingle process (splits into 2)Dorsal root ganglia; sensory neurons
Types of neurons: large motor neuron, pseudounipolar, bipolar, pyramidal cell, interneurons, Purkinje cell
Fig 12.2 - Types of neurons - Histology: A Text and Atlas

2. The Neuron Cell Body (Perikaryon)

The cell body is the protein-producing hub of the neuron.
Photomicrograph showing Nissl bodies, neuroglial nuclei, and prominent nucleolus in neurons stained with toluidine blue
Fig 12.4a - Nerve cell bodies from ventral horn (toluidine blue stain, x640) - Histology: A Text and Atlas
Key histological features of the neuron cell body:
  • Large euchromatic nucleus with a prominent nucleolus (reflects intense protein synthesis)
  • Nissl bodies - basophilic granules seen with basic dyes (e.g., cresyl violet, thionine); each Nissl body corresponds to a stack of rough endoplasmic reticulum (rER) + free ribosomes. They extend into dendrites but not into the axon
  • Golgi apparatus - large, perinuclear
  • Mitochondria, lysosomes, neurofilaments (intermediate filaments), neurotubules (microtubules), and transport vesicles
Electron micrograph of neuron cell body showing rER (Nissl bodies), Golgi (G), lysosomes (L), mitochondria (M)
Fig 12.4b - Electron micrograph of nerve cell body (x15,000) - Histology: A Text and Atlas

Axon Hillock

  • The region where the axon originates from the cell body
  • Lacks Nissl bodies and Golgi cisternae - distinguishes axons from dendrites histologically
  • Site of MTOC (centrosome)
  • The Axon Initial Segment (AIS) follows immediately after the hillock - this is where action potentials are generated

3. Dendrites and Dendritic Spines

  • Dendrites transmit impulses toward the cell body; they contain Nissl bodies, free ribosomes, and Golgi apparatus
  • Dendritic spines are short protrusions on dendrites, especially on pyramidal neurons; they are the primary sites of excitatory synapses
  • Spines are dynamic structures: their density increases with learning and memory acquisition; stable spines can persist for months
  • Loss of dendritic spines on pyramidal neurons in the DLPFC is implicated in schizophrenia

4. Axon

  • Conducts impulses away from the cell body
  • One axon per neuron; can be over a meter long (e.g., motor neurons)
  • Cytoplasm (axoplasm) contains microtubules, neurofilaments, mitochondria, and transport vesicles - but NO Nissl bodies
  • Anterograde transport (cell body → terminal): kinesin-driven, fast (200-400 mm/day) or slow (0.5-5 mm/day)
  • Retrograde transport (terminal → cell body): dynein-driven; used by viruses (herpes, rabies) and toxins to enter the CNS

5. Synapses

Neurons communicate via specialized junctions called synapses. Types by morphology:
Synapse TypeContact
AxodendriticAxon → dendrite (most common; includes spine synapses)
AxosomaticAxon → cell body
AxoaxonicAxon → axon (modulates other synapses)
Synapse structure:
  • Presynaptic knob - contains synaptic vesicles loaded with neurotransmitter
  • Synaptic cleft - 20-30 nm gap
  • Postsynaptic density - complex of interlinked proteins anchoring receptors and signal transduction machinery
Synapses are not visible on H&E stain but can be demonstrated with the Golgi silver method (appear as oval boutons on the postsynaptic neuron surface).

6. Neuroglia (Supporting Cells of the CNS)

Four main types:
CellLM AppearanceFunction
AstrocytesStar-shaped; large pale nucleus; GFAP+BBB maintenance, synaptic support, scar formation (gliosis), K+ buffering
OligodendrocytesSmall, round dark nucleus; few processesProduce myelin for CNS axons (one cell myelinates multiple axons)
MicrogliaSmall, elongated, irregular dark nucleusCNS immune cells (phagocytosis, antigen presentation); derived from monocytes
Ependymal cellsColumnar/cuboidal ciliated epitheliumLine ventricles and central canal; produce and circulate CSF
Key contrast: In the PNS, myelin is produced by Schwann cells (each cell myelinates only one axon segment). In the CNS, myelin is produced by oligodendrocytes.
On routine H&E sections, neuroglial cells appear as small, dark nuclei scattered between neurons - their cell processes are not visible without special stains.

7. Cerebral Cortex - Layered Architecture

The cerebral cortex is a laminated sheet of neurons several millimeters thick covering the cerebral hemispheres. It contains approximately 22 billion neurons connected by ~165 trillion synapses.
Over 90% of the cortex is neocortex, which has a 6-layer (laminar) structure:
LayerNameMain Content
IMolecular (plexiform) layerFew neurons; mainly axons and dendrites of deeper cells; Cajal-Retzius cells
IIExternal granular layerSmall pyramidal and granule cells
IIIExternal pyramidal layerMedium pyramidal cells; association and commissural fibers
IVInternal granular layerStellate cells; prominent in sensory cortex (receives thalamic input)
VInternal pyramidal (ganglionic) layerLarge pyramidal cells (Betz cells in motor cortex); project to spinal cord
VIMultiform (fusiform) layerMixed cell types; projects to thalamus
Nissl-stained sections showing 6 cortical layers in DLPFC (A), motor cortex with Betz cells in layer V (B), auditory cortex (C), and visual cortex (D)
Fig 1.2-19 - Nissl-stained cortical sections comparing 4 regions (DLPFC, Motor, Auditory, Visual cortex). Note the prominent Betz cells in layer V of panel B and the marked differences in laminar organization. - Kaplan & Sadock's Comprehensive Textbook of Psychiatry

Two Major Neuron Types in Neocortex

Pyramidal neurons (~75% of all neocortical neurons):
  • Triangular cell body with a single apical dendrite ascending to the cortical surface
  • Basal dendrites spread laterally
  • Dendritic spines carry most excitatory synapses
  • Predominantly excitatory (glutamate); projection neurons
Stellate (granule/nonpyramidal) neurons:
  • Small local circuit neurons (interneurons)
  • Primarily inhibitory (GABA)
  • Multiple subtypes distinguished by neuropeptide content and morphology: chandelier cells, basket cells, Martinotti cells, double-bouquet cells
  • Axons arborize locally within gray matter

8. Gray Matter vs. White Matter

FeatureGray MatterWhite Matter
Gross appearanceDark/grayWhite (due to myelin)
ContentNeuron cell bodies, dendrites, synapses, glial cellsMyelinated axons, oligodendrocytes
LocationCortex (surface), basal ganglia, deep nucleiSubcortical (below cortex)

9. Key Histological Stains for Brain Tissue

StainWhat It Shows
H&EGeneral structure; neurons with pale nucleus and nucleolus; small glial nuclei
Nissl (cresyl violet / thionine)Nissl bodies; neuron cell bodies; glial nuclei
Golgi silverFull neuron morphology including dendrites, spines, synapses
Luxol fast blueMyelin (blue)
Bielschowsky silverAxons and neurofibrils
GFAP immunostainAstrocytes
CD68 / Iba-1Microglia

Sources:
  • Histology: A Text and Atlas with Correlated Cell and Molecular Biology (9781975181512), Chapter 12 - The Neuron, pp. 908-940
  • Kaplan & Sadock's Comprehensive Textbook of Psychiatry (9781975175733), pp. 210-218 - Cerebral Cortex

Spinal cord and lessons

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Spinal Cord: Histology and Clinical Lesion Syndromes


Part 1 - Histology of the Spinal Cord

Gross Organization

In cross section, the spinal cord shows two distinct compartments:
  • Inner butterfly/H-shaped gray matter - contains neuron cell bodies, dendrites, synapses, and neuroglia
  • Outer white matter - contains ascending and descending myelinated axon tracts
Cross section of human spinal cord (Bielschowsky silver stain, x5) showing butterfly-shaped gray matter with dorsal horns (DH), ventral horns (VH), gray commissure (GC), white matter, ventral fissure (VF), and dorsal roots
Fig 12.34 - Cross section of human spinal cord, Bielschowsky silver stain (x5) - Histology: A Text and Atlas

Gray Matter

The gray matter is organized into columns (horns) and further sub-divided into Rexed's laminae (I-X):
HornLocationCell TypesFunction
Dorsal (posterior) hornDorsal prongsSensory interneuronsReceive afferent sensory input from periphery
Ventral (anterior) hornVentral prongsLarge motor neurons (anterior horn cells)Efferent - innervate skeletal muscle
Lateral hornT1-L2 onlyPreganglionic sympathetic neuronsSympathetic output
Gray commissureBridges both halvesInterneuronsConnects the two sides; contains central canal
Cervical spinal cord cross-section showing PF (posterior funiculus), PH (posterior horn), IG (intermediate gray), AH (anterior horn), AF (anterior funiculus), LF (lateral funiculus), and Lissauer's tract
eFig. 9.39 - Spinal cord cross-section at C8 segment - Gray's Anatomy for Students

Anterior Horn Cells (Motor Neurons)

  • Large, basophilic multipolar neurons - easily recognized on H&E
  • Prominent Nissl bodies in cytoplasm
  • Large euchromatic nucleus with prominent nucleolus
  • Axon exits via the ventral root → spinal nerve → neuromuscular junction

Dorsal Horn

  • Receives pseudounipolar sensory neurons whose cell bodies lie in dorsal root ganglia (DRG)
  • Contains substantia gelatinosa (Rexed lamina II) - small neurons processing pain/temperature
  • Central segment of DRG neurons enters posterior horn via dorsal root

Rexed's Laminae (I-X)

LaminaRegionSignificance
I (Marginal zone)Tip of dorsal hornPain/temperature (superficial)
II (Substantia gelatinosa)Dorsal hornPain modulation; opiate receptors
III-IVDorsal hornTouch/pressure
VNeck of dorsal hornSpinothalamic tract origin; wide dynamic range neurons
VIBase of dorsal hornProprioception input
VIIIntermediate zoneAutonomic (lateral horn T1-L2); Clarke's column (C8-L2)
VIII-IXVentral hornMotor interneurons (VIII); alpha and gamma motor neurons (IX)
XCentral canal zoneCommissural interneurons

White Matter - Funiculi and Tracts

The white matter is divided into three funiculi on each side:
Spinal cord tracts diagram: ascending tracts (left) - fasciculus gracilis, cuneatus, spinothalamic, spinocerebellar; descending tracts (right) - lateral corticospinal, rubrospinal, vestibulospinal, reticulospinal, tectospinal, ventral corticospinal
eFig. 9.42 - Ascending and descending tracts in the spinal cord - Gray's Anatomy for Students

Ascending (Sensory) Tracts

1. Posterior Column - Medial Lemniscal Pathway
  • Location: Posterior funiculus
  • Tracts: Fasciculus gracilis (lower limb/trunk) + Fasciculus cuneatus (upper limb/neck)
  • Modalities: Fine touch, vibration, conscious proprioception, 2-point discrimination
  • Course: 1st order neuron enters ipsilateral posterior column → ascends to medulla → crosses (internal arcuate fibers) → medial lemniscus → VPL thalamus → primary somatosensory cortex
  • Ipsilateral until medulla - lesions below medulla cause ipsilateral loss
2. Anterolateral (Spinothalamic) Pathway
  • Location: Anterior and lateral funiculus
  • Modalities: Pain, temperature, crude touch
  • Course: 1st order neuron enters posterior horn (laminae I, IV, V) → crosses in anterior white commissure (2-3 segments above entry) → ascends contralateral anterolateral column → VPL thalamus → somatosensory cortex
  • Crosses within spinal cord - lesions cause contralateral loss below injury level
3. Spinocerebellar Tracts
  • Dorsal (posterior) spinocerebellar: Ipsilateral; unconscious proprioception from lower limb
  • Ventral (anterior) spinocerebellar: Crossed then re-crossed; unconscious proprioception

Descending (Motor) Tracts

1. Lateral Corticospinal Tract (most important)
  • Location: Lateral funiculus (lateral white matter)
  • Origin: Primary motor cortex (Betz cells, layer V)
  • Course: Motor cortex → corona radiata → posterior limb internal capsule → crus cerebri → pons → crosses in pyramidal decussation at medulla-cord junction → descends ipsilateral lateral column → synapse on anterior horn cells
  • Function: Voluntary movement of limbs (especially distal fine movements)
  • Lesion above decussation → contralateral UMN signs; lesion in cord → ipsilateral UMN signs
2. Ventral Corticospinal Tract
  • Uncrossed; descends in anterior funiculus; controls axial/trunk muscles
3. Rubrospinal Tract - lateral column; from red nucleus; limb flexion
4. Vestibulospinal, Reticulospinal, Tectospinal - anterior/medial column; postural control, axial movements

Meninges

Three connective tissue membranes cover the spinal cord:
LayerCompositionNotes
Dura materDense irregular connective tissue (outermost)Epidural space between dura and vertebral periosteum contains fat and veins
ArachnoidDelicate leptomeningeal cells; connected to pia by trabeculaeSubarachnoid space contains CSF
Pia materThin, closely adheres to cord surfaceDenticulate ligaments anchor cord to dural wall

Part 2 - Spinal Cord Lesion Syndromes

Key Principle: Tract Localization

Understanding which tract is damaged (and where it crosses) predicts the clinical picture:
Tract/StructureCrossesDeficit is...
Lateral corticospinalMedullary decussationIpsilateral below cord lesion
SpinothalamicAnterior white commissure (spinal cord)Contralateral, 1-2 levels below lesion
Posterior columnsMedullaIpsilateral below cord lesion

1. Complete Cord Transection

Cause: Severe trauma, MS, transverse myelitis
Features below level of lesion:
  • Complete bilateral motor loss (UMN if above conus; LMN at level of lesion)
  • Complete bilateral loss of all sensory modalities
  • Autonomic dysfunction: neurogenic bladder/bowel, loss of sweating
  • Acute: Spinal shock - flaccid paralysis, areflexia, urinary retention
  • Chronic: Spasticity, hyperreflexia, Babinski sign

2. Brown-Séquard Syndrome (Hemisection)

Cause: Penetrating trauma (stab wounds), unilateral disc herniation, epidural hematoma, MS
Features:
DeficitSideExplanation
Ipsilateral UMN motor loss (weakness, spasticity)Same side as lesionLateral corticospinal tract - ipsilateral
Ipsilateral loss of fine touch, vibration, proprioceptionSame side as lesionPosterior columns - ipsilateral
Contralateral loss of pain and temperatureOpposite sideSpinothalamic tract - already crossed
Ipsilateral LMN signs at level of lesionSame sideAnterior horn cell damage at that level
Ipsilateral Horner syndrome (if cervical)Same sideDescending sympathetic fibers
Prognosis is good - best recovery of all incomplete cord syndromes.

3. Central Cord Syndrome

Cause: Hyperextension injury in elderly with cervical spondylosis (most common incomplete SCI - ~70% of incomplete injuries); cord is pinched between osteophyte/disc anteriorly and buckled ligamentum flavum posteriorly
Features:
  • Upper limbs > lower limbs weakness (central fibers of corticospinal tract serving arms are most affected)
  • Greater distal > proximal dysfunction in arms
  • Variable sensory loss
  • Sacral pinprick sensation often preserved (sacral fibers are peripheral in cord)
  • Bladder dysfunction common
Most common incomplete cord syndrome. Prognosis is moderate - >50% regain ambulation.

4. Anterior Cord Syndrome

Cause: Anterior spinal artery occlusion or compression (hyperflexion with disc/bone fragment compressing anterior cord)
Structure damaged: Anterior 2/3 of cord (corticospinal tracts + spinothalamic tracts); posterior columns spared
Features:
  • Complete motor loss below lesion (bilateral)
  • Loss of pain and temperature below lesion (bilateral)
  • Preserved: Vibration, proprioception, fine touch (posterior columns intact)
Worst prognosis of all incomplete cord syndromes.

5. Posterior Cord Syndrome

Cause: Rare; tumors, hyperextension injury, subacute combined degeneration (B12 deficiency affecting posterior columns)
Structure damaged: Posterior columns
Features:
  • Loss of proprioception and vibration (bilateral)
  • Preserved: Motor function, pain, temperature
  • Presents as sensory ataxia (positive Romberg test)

6. Conus Medullaris Syndrome

Level: Injury to sacral cord segments (S2-S4) at T11-L2 vertebral level
Features:
  • Mixed UMN + LMN picture (sacral LMN + lumbar UMN)
  • Areflexic bladder (urinary retention → overflow incontinence)
  • Areflexic bowel (fecal incontinence)
  • Saddle anesthesia (perineum, genitalia)
  • Erectile dysfunction
  • Loss of bulbocavernosus reflex and anal wink = poor prognosis

7. Cauda Equina Syndrome

Level: Injury to lumbosacral nerve roots below conus (L1-S5 roots within spinal canal)
Important: This is a peripheral nerve (LMN) injury, not a spinal cord injury
Features:
  • Flaccid, areflexic paralysis of lower limbs
  • Saddle anesthesia
  • Areflexic bladder and bowel
  • Absent lower limb reflexes
  • Often asymmetric (roots affected unevenly)
  • Surgical emergency - early decompression needed
Cauda equina vs conus: Both cause saddle anesthesia and bladder/bowel dysfunction. Cauda equina is pure LMN (flaccid, areflexic). Conus has mixed UMN+LMN features.

Quick Reference: Lesion Pattern Summary

SyndromeMotorSensory LostSensory SparedReflexes
Complete transectionBilateral belowAll modalitiesNoneUMN (chronic)
Brown-SéquardIpsilateral UMNIpsi: posterior columns; Contra: pain/tempVariableIpsi UMN
Central cordUE > LE, bilateralVariable, sacral sparingSacralUMN
Anterior cordBilateral belowPain/temp bilateralProprioception/vibrationUMN
Posterior cordNoneProprioception/vibrationPain/temp/motorNormal
Conus medullarisLE weak (mixed)Saddle areaUpper legs variableMixed, no bulbocavernosus
Cauda equinaFlaccid LESaddle areaUpper legsAbsent (LMN)

Sources:
  • Histology: A Text and Atlas (9781975181512), Chapter 12, pp. 998-1010
  • Gray's Anatomy for Students (9780323934237), Chapter 9, pp. 1325-1330
  • Campbell's Operative Orthopaedics 15th Ed (9780443117633), Chapter 48, pp. 2468-2472
  • Bradley and Daroff's Neurology in Clinical Practice (9780323642613), Spinal Cord Injury Syndromes
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