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Sulfonamides, Cotrimoxazole, Quinolones & Urinary Tract Antiseptics
Complete Pharmacological Reference
PART 1: SULFONAMIDES
Pathology / What They Treat
Sulfonamides target bacterial folate synthesis — a pathway absent in human cells, making them selectively toxic to bacteria. They are active against both gram-positive and gram-negative organisms.
Mechanism of Action
Harrison's Principles of Internal Medicine, 21st Ed., p. 4372
Sulfonamides are structural analogues of para-aminobenzoic acid (PABA). They competitively inhibit dihydropteroate synthetase, blocking the conversion of PABA → dihydropteroate (a precursor to dihydrofolate).
PABA → [Dihydropteroate synthetase] → Dihydropteroate → Dihydrofolate
↑ BLOCKED by Sulfonamides
Result: Bacteria cannot synthesize folate → no thymidine/purines → no DNA replication → bacteriostatic action.
- Humans obtain folate from diet (not synthesized endogenously), so human cells are unaffected.
Drug Names — Sulfonamides
| Drug | Route | Main Use |
|---|
| Sulfamethoxazole (SMX) | Oral | Always combined with TMP |
| Sulfadiazine | Oral/IV | Toxoplasmosis, nocardia |
| Sulfacetamide | Topical (eye drops) | Ocular infections |
| Silver sulfadiazine | Topical (cream) | Burns — antibacterial |
| Sulfasalazine | Oral | IBD, rheumatoid arthritis |
| Mafenide | Topical | Burns (penetrates eschar) |
| Dapsone | Oral | Leprosy, PCP prophylaxis |
Clinical Uses of Sulfonamides (Alone)
- Sulfadiazine + pyrimethamine → Toxoplasmosis (1st line)
- Silver sulfadiazine → Burn wound infections
- Sulfasalazine → Ulcerative colitis, Crohn's disease, rheumatoid arthritis
- Dapsone → Leprosy (with rifampicin), PCP prophylaxis in HIV
Toxicity / Adverse Effects
| Effect | Details |
|---|
| Hypersensitivity | Rash, urticaria, Steven-Johnson syndrome (SJS), toxic epidermal necrolysis (TEN) |
| Crystalluria/Nephrotoxicity | Crystals form in renal tubules → hematuria, obstructive uropathy |
| Hemolytic anemia | Especially in G6PD deficiency |
| Kernicterus | Displaces bilirubin from albumin → contraindicated in neonates |
| Bone marrow suppression | Agranulocytosis, thrombocytopenia |
| Hepatotoxicity | Rare — cholestatic jaundice |
| Photosensitivity | Avoid prolonged sun exposure |
Contraindications
- Neonates / premature infants (kernicterus risk)
- Pregnancy (near term — displaces bilirubin; 1st trimester — folate antagonism)
- Severe renal/hepatic failure
- G6PD deficiency (hemolysis)
- Hypersensitivity to sulfa drugs
Resistance Mechanisms
- Mutation of dihydropteroate synthetase
- Plasmid-encoded resistant enzymes bypassing the inhibited step
- Increased PABA production by bacteria
PART 2: COTRIMOXAZOLE (TMP-SMX)
What It Is
Cotrimoxazole = Trimethoprim (TMP) + Sulfamethoxazole (SMX) in a fixed ratio of 1:5 (TMP:SMX).
This is a synergistic combination that achieves sequential double blockade of the folate pathway.
Mechanism of Action (Double Blockade)
Harrison's Principles of Internal Medicine, 21st Ed., p. 4372
PABA
↓ ← STEP 1: SMX blocks Dihydropteroate Synthetase
Dihydropteroate
↓
Dihydrofolate
↓ ← STEP 2: TMP blocks Dihydrofolate Reductase
Tetrahydrofolate (THF)
↓
DNA precursors (thymidine, purines)
- SMX blocks step 1 (dihydropteroate synthetase)
- TMP blocks step 2 (dihydrofolate reductase)
- Together: 20–100x more potent than either alone → bactericidal combination
TMP has ~50,000x greater affinity for bacterial dihydrofolate reductase than human enzyme.
Spectrum of Activity
| Organism Type | Examples |
|---|
| Gram-positive | MRSA (community), Streptococcus, Listeria monocytogenes |
| Gram-negative | E. coli, Klebsiella, Proteus mirabilis, Salmonella, Shigella, H. influenzae |
| Other | Pneumocystis jirovecii (fungus-like), Toxoplasma, Nocardia, Stenotrophomonas |
NOT active against: Pseudomonas, anaerobes, most Enterococci
Clinical Uses of Cotrimoxazole (TMP-SMX)
| Indication | Details |
|---|
| UTI (uncomplicated) | 1st or 2nd line for cystitis (3-day course) |
| PCP (Pneumocystis jirovecii pneumonia) | Drug of CHOICE for treatment AND prophylaxis in HIV/immunocompromised |
| Toxoplasmosis prophylaxis | HIV patients (CD4 <100) |
| Nocardiosis | Drug of choice |
| Shigellosis | Where sensitive |
| Typhoid fever | Resistance common now |
| MRSA (community-acquired) | Skin and soft tissue infections |
| Listeria meningitis | In penicillin-allergic patients |
| Traveler's diarrhea | Where sensitive |
| Granulomatosis with polyangiitis (Wegener's) | Prevents respiratory relapses |
| Isospora/Cyclospora | GI parasites |
Pharmacokinetics
| Parameter | TMP | SMX |
|---|
| Oral bioavailability | ~100% | ~100% |
| Half-life | ~10 hrs | ~10 hrs (matched) |
| Distribution | Wide — CNS, prostate | Wide |
| Excretion | Renal | Renal |
- The half-lives are matched to maintain the 1:20 ratio in plasma.
Adverse Effects of Cotrimoxazole
| System | Effect |
|---|
| Hematologic | Megaloblastic anemia, neutropenia, thrombocytopenia (folate depletion) |
| Renal | Hyperkalemia (TMP blocks K+ secretion like amiloride), elevated creatinine (competes with tubular secretion), crystalluria |
| Hypersensitivity | SJS/TEN (especially in HIV — much higher rate), drug fever, rash |
| GI | Nausea, vomiting, anorexia |
| Electrolytes | Hyperkalemia (TMP acts like K+-sparing diuretic) |
| Hemolysis | G6PD deficiency |
Drug Interactions — Cotrimoxazole
| Drug | Interaction |
|---|
| Warfarin | TMP-SMX inhibits warfarin metabolism → ↑ INR, bleeding risk |
| Methotrexate | Additive folate antagonism → severe bone marrow toxicity |
| ACE inhibitors / K+-sparing diuretics | Hyperkalemia (TMP effect additive) |
| Phenytoin | SMX inhibits metabolism → phenytoin toxicity |
| Cyclosporine | Nephrotoxicity enhanced |
| Oral hypoglycemics (sulfonylureas) | Hypoglycemia risk (structural similarity) |
Diet / Food Interactions
- Avoid high PABA foods (yeast extracts) — can theoretically reduce efficacy
- Take with plenty of water (at least 2L/day) to prevent crystalluria
- Folate supplementation (folic acid) does NOT reverse antibacterial activity because bacteria cannot take up exogenous folate — but humans can. Folinic acid (leucovorin) can rescue human cells in toxicity.
Contraindications — Cotrimoxazole
- Neonates < 2 months (kernicterus)
- Pregnancy — especially 1st trimester (folate antagonism → neural tube defects) and near term (neonatal jaundice)
- Severe renal failure (dose adjustment required; avoid if CrCl <15)
- Megaloblastic anemia from folate deficiency
- G6PD deficiency (hemolytic anemia)
- Hypersensitivity to sulfonamides
PART 3: QUINOLONES / FLUOROQUINOLONES
Overview
Quinolones are synthetic broad-spectrum antibiotics. The addition of a fluorine atom at position 6 created the fluoroquinolones — dramatically expanded spectrum and improved pharmacokinetics.
Mechanism of Action
Fluoroquinolones inhibit two bacterial type II topoisomerases:
| Enzyme | Function | Primary Target |
|---|
| DNA gyrase (topoisomerase II) | Relieves positive supercoiling during replication | Primary in gram-negatives |
| Topoisomerase IV | Separates (decatenates) daughter chromosomes after replication | Primary in gram-positives |
Result: Bacterial DNA cannot be unwound → replication arrest → strand breaks → bactericidal (concentration-dependent killing)
Human topoisomerase II has very low affinity for fluoroquinolones → selective toxicity.
Generations of Quinolones
| Generation | Drugs | Spectrum |
|---|
| 1st (Quinolones) | Nalidixic acid, Cinoxacin | Gram-negative only (urinary) |
| 2nd (Fluoroquinolones) | Ciprofloxacin, Norfloxacin, Ofloxacin, Enoxacin | Gram-negative + limited gram-positive; atypicals |
| 3rd | Levofloxacin, Sparfloxacin | Enhanced gram-positive + atypicals + some anaerobes |
| 4th | Moxifloxacin, Gemifloxacin, Trovafloxacin | Broadest: gram+, gram−, atypicals, anaerobes |
Individual Drug Profiles
Ciprofloxacin (Cipro)
- Best quinolone for Pseudomonas aeruginosa
- Uses: UTI, anthrax (prophylaxis/treatment), typhoid, gonorrhea, bone/joint infections, intra-abdominal (with metronidazole), TB (2nd line)
- NOT for community-acquired pneumonia (poor pneumococcal coverage)
Norfloxacin
- Concentrated in urine — mainly used for uncomplicated UTI
- Low systemic bioavailability
Ofloxacin
- UTI, STIs (chlamydia, gonorrhea), respiratory infections, tuberculosis (2nd line)
Levofloxacin (Levaquin)
- "Respiratory quinolone" — Community-acquired pneumonia (CAP), sinusitis, bronchitis
- Covers Streptococcus pneumoniae well
- Also: UTI, prostatitis, inhalational anthrax
Moxifloxacin (Avelox)
- Best anaerobic coverage of all fluoroquinolones
- CAP, ABECB, skin infections, intra-abdominal infections
- NOT for UTI — inadequate urinary concentration
Nalidixic acid (1st generation)
- Historical — urinary antiseptic only
- Gram-negatives in urinary tract
- Now mostly replaced
Spectrum of Activity — Fluoroquinolones
| Organism Category | Examples |
|---|
| Gram-negative | E. coli, Klebsiella, Pseudomonas (cipro), Salmonella, Shigella, H. influenzae, Neisseria |
| Gram-positive | S. aureus (MSSA), S. pneumoniae (levo/moxi best) |
| Atypicals | Mycoplasma, Chlamydia, Legionella, Rickettsia |
| Mycobacteria | M. tuberculosis (2nd line), M. avium |
| Anaerobes | Moxifloxacin only |
NOT reliable: MRSA (mostly), Enterococcus, many anaerobes (except moxi)
Clinical Uses Summary
| Use | Drug of Choice |
|---|
| Uncomplicated UTI | Ciprofloxacin, norfloxacin, ofloxacin, TMP-SMX |
| Complicated UTI / pyelonephritis | Ciprofloxacin or levofloxacin (7-14 days) |
| CAP (community-acquired pneumonia) | Levofloxacin or moxifloxacin |
| Pseudomonas infections | Ciprofloxacin |
| Prostatitis | Ciprofloxacin or levofloxacin (4–6 weeks) |
| Anthrax (inhalation) | Ciprofloxacin |
| Typhoid fever | Ciprofloxacin or levofloxacin |
| Gonorrhea | Ceftriaxone now preferred (quinolone resistance high) |
| Tuberculosis (2nd line) | Levofloxacin, moxifloxacin |
| Osteomyelitis | Ciprofloxacin (excellent bone penetration) |
Pharmacokinetics — Fluoroquinolones
| Property | Details |
|---|
| Oral bioavailability | Excellent (~70–99%) — oral equals IV |
| Volume of distribution | Large — excellent tissue penetration (lung, prostate, bone) |
| Concentration-dependent killing | Higher peak = better killing |
| Post-antibiotic effect | Prolonged — bacteria don't regrow for hours after drug level drops |
| Metabolism | Hepatic (moxifloxacin) or renal (cipro, levofloxacin) |
| Renal excretion | Ciprofloxacin, levofloxacin → dose reduce in renal failure |
Adverse Effects / Toxicity — Fluoroquinolones
| System | Effect | Details |
|---|
| GI | Nausea, vomiting, diarrhea, C. difficile colitis | Most common |
| CNS | Headache, dizziness, insomnia, seizures | Lower seizure threshold; caution in epilepsy |
| Tendinopathy | Tendon inflammation, Achilles tendon rupture | Major FDA Black Box Warning |
| QT prolongation | Especially sparfloxacin, moxifloxacin | Avoid with other QT-prolonging drugs |
| Cartilage toxicity | Damages developing cartilage | Contraindicated in children <18, pregnancy |
| Peripheral neuropathy | Irreversible in some cases | FDA Black Box Warning |
| Phototoxicity | Sunburn-like rash | Especially sparfloxacin, lomefloxacin |
| Hypoglycemia/hyperglycemia | Gatifloxacin notorious (withdrawn) | Ciprofloxacin can cause hypoglycemia too |
| Hepatotoxicity | Rare — trovafloxacin (withdrawn) | |
| Aortic aneurysm / dissection | FDA warning 2018 | Avoid in patients with aortic disease |
Black Box Warnings (FDA) — Fluoroquinolones
- Tendinitis and tendon rupture (especially Achilles, risk ↑ with corticosteroids, age >60, renal failure)
- Peripheral neuropathy (may be permanent)
- CNS effects (seizures, toxic psychosis)
- Myasthenia gravis exacerbation (neuromuscular blockade)
- Aortic aneurysm/dissection
Drug Interactions — Fluoroquinolones
| Drug/Substance | Interaction |
|---|
| Antacids (Al³⁺, Mg²⁺), iron, calcium, zinc | Chelation → ↓ fluoroquinolone absorption by up to 90% |
| Theophylline | Ciprofloxacin inhibits CYP1A2 → theophylline toxicity (seizures) |
| Warfarin | ↑ INR |
| NSAIDs | ↑ seizure risk |
| Class IA/III antiarrhythmics | Additive QT prolongation |
| Sucralfate | ↓ absorption — separate by 2 hours |
| Corticosteroids | Markedly ↑ tendon rupture risk |
Diet / Food Interactions — Fluoroquinolones
- Dairy products, calcium-fortified foods/juices — reduce absorption (chelation of divalent cations)
- Antacids and iron supplements — take quinolone 2 hours before or 6 hours after
- Caffeine — ciprofloxacin reduces caffeine metabolism → jitteriness, insomnia
- Can be taken with or without food (food slows but doesn't prevent absorption)
Contraindications — Fluoroquinolones
- Children < 18 years (cartilage toxicity — exceptions: anthrax, cystic fibrosis)
- Pregnancy and breastfeeding
- History of tendon disorders / on corticosteroids (high tendon rupture risk)
- Myasthenia gravis (worsens neuromuscular blockade)
- QT prolongation / electrolyte disturbances (hypokalemia, hypomagnesemia)
- Epilepsy / CNS disorders
- Hypersensitivity to quinolones
Resistance Mechanisms
- Mutations in DNA gyrase (gyrA, gyrB) or topoisomerase IV (parC, parE)
- Efflux pumps (overexpression)
- Plasmid-mediated quinolone resistance (PMQR) — qnr genes
- Reduced outer membrane permeability (gram-negatives)
PART 4: URINARY TRACT ANTISEPTICS
These are agents concentrated in the urine and used specifically for urinary tract infections (UTIs).
4A. NITROFURANTOIN
Harrison's Principles of Internal Medicine, 21st Ed., p. 4352
Mechanism of Action
- Nitrofurantoin is reduced by bacterial nitroreductase enzymes to highly reactive electrophilic intermediates
- These intermediates damage bacterial DNA, ribosomes, cell wall proteins, and other macromolecules
- Bactericidal, concentration-dependent
- Because multiple bacterial targets are damaged simultaneously, resistance is rare
Spectrum
| Organism | Activity |
|---|
| Gram-positive | S. aureus, S. epidermidis, S. saprophyticus, E. faecalis, Streptococcus agalactiae, viridans streptococci, Corynebacteria |
| Gram-negative | E. coli (most important), Enterobacter, Salmonella, Shigella |
| NOT active | Pseudomonas, Proteus mirabilis (alkaline urine), Klebsiella (variable), Serratia |
Clinical Uses
- Drug of choice for uncomplicated UTI (cystitis)
- Preferred in UTI during pregnancy (but avoid near term)
- Prophylaxis of recurrent cystitis
- UTIs caused by ESBL-producing E. coli (important emerging use)
- NOT suitable for pyelonephritis (inadequate tissue/blood levels)
Pharmacokinetics
- Oral only (no IV formulation)
- Rapidly absorbed, rapidly excreted into urine → high urinary concentrations, low serum levels
- Requires functioning kidneys to concentrate in urine
- Two formulations: macrocrystalline (less GI side effects) and microcrystalline
Adverse Effects
| System | Effect |
|---|
| GI | Nausea, vomiting (take with food) |
| Pulmonary | Acute hypersensitivity pneumonitis (acute); chronic interstitial fibrosis (long-term use) |
| Neurologic | Peripheral neuropathy (prolonged use, renal failure) |
| Hemolytic anemia | G6PD deficiency |
| Hepatotoxicity | Chronic active hepatitis (rare, long-term) |
| Urine discoloration | Dark brown/rust color (harmless) |
Contraindications
- Renal failure (GFR <45 mL/min / CrCl <30) — drug cannot concentrate in urine AND toxic metabolites accumulate → peripheral neuropathy
- Pregnancy at term (38–42 weeks) — hemolytic anemia in neonate (G6PD)
- Neonates < 1 month
- G6PD deficiency
Drug/Food Interactions
- Take with food or milk — significantly reduces GI side effects
- Antacids (Mg trisilicate) — reduce absorption
- Probenecid — blocks renal tubular secretion → reduces urinary levels (reduces efficacy)
- Quinolones — antagonism (avoid concurrent use)
4B. NALIDIXIC ACID (1st generation quinolone)
- Mechanism: Inhibits DNA gyrase
- Use: Gram-negative UTI (E. coli, Klebsiella, Proteus)
- Limitations: Resistance develops rapidly, no systemic activity, now largely obsolete
- Side effects: GI upset, photosensitivity, hemolysis (G6PD), seizures in epilepsy
- Contraindications: Children <3 months, G6PD deficiency, epilepsy
4C. METHENAMINE (Methenamine hippurate / Methenamine mandelate)
- Mechanism: In acidic urine (pH <5.5), methenamine hydrolyzes to formaldehyde, which is bactericidal by denaturing bacterial proteins
- Use: Long-term prophylaxis of recurrent UTIs
- NOT for acute infections (takes time to form formaldehyde)
- Requires acidic urine — co-administer with ascorbic acid or ammonium chloride
- Contraindications: Renal failure, hepatic failure, sulfonamide co-administration (precipitates in urine), metabolic acidosis
4D. FOSFOMYCIN
- Mechanism: Inhibits MurA (UDP-N-acetylglucosamine enolpyruvyl transferase) — first step of peptidoglycan synthesis
- Use: Single-dose treatment of uncomplicated UTI (E. coli, E. faecalis)
- Advantages: Single dose, useful in ESBL-producing organisms, safe in pregnancy
- Adverse effects: Diarrhea, nausea (generally well tolerated)
MASTER COMPARISON TABLE
| Feature | Sulfonamides | Cotrimoxazole | Fluoroquinolones | Nitrofurantoin |
|---|
| Mechanism | Block DHPS (step 1 folate) | Double block folate synthesis | Inhibit DNA gyrase + topo IV | Reactive intermediates → DNA damage |
| Bactericidal? | Bacteriostatic | Bactericidal | Bactericidal | Bactericidal |
| Killing pattern | — | Time-dependent | Concentration-dependent | Concentration-dependent |
| Key organisms | Gram+/- broad | Broad incl. PCP, MRSA, Nocardia | Broad incl. Pseudomonas (cipro) | E. coli, gram+, NOT Pseudomonas |
| Pregnancy | Avoid 1st trimester & term | Avoid 1st trimester & term | Contraindicated | Safe except near term |
| Children | Avoid <2 months | Avoid <2 months | Contraindicated <18 yrs | Avoid <1 month |
| Renal failure | Dose reduce | Dose reduce | Reduce (cipro/levo) | Contraindicated GFR<45 |
| Key toxicity | SJS, crystalluria, kernicterus | Hyperkalemia, SJS, bone marrow | Tendon rupture, QT prolongation | Pulmonary fibrosis, neuropathy |
| Food interaction | Drink plenty water | Drink plenty water | Avoid dairy/antacids | Take WITH food |
| Drug of choice for | Burns (silver sulfadiazine), IBD (sulfasalazine) | PCP, Nocardia, UTI, MRSA-SSTI | CAP (levo/moxi), Pseudomonas (cipro) | Uncomplicated UTI, pregnancy UTI |
QUICK CLINICAL MEMORY AIDS
"TMP-SMX hits folate TWICE" — Step 1 (SMX) + Step 2 (TMP)
"Cipro = Pseudomonas Killer" — best quinolone for Pseudomonas
"Levo/Moxi = Respiratory Quinolones" — respiratory fluoroquinolones for CAP
"Nitrofurantoin = Stay in the bladder" — only for uncomplicated cystitis, NOT pyelonephritis
"Avoid quinolones in kids, pregnant women, and tendons" — three absolute cautions
"TMP-SMX + ACE inhibitor = Dangerous hyperkalemia" — TMP acts like potassium-sparing diuretic
"Antacids kill quinolone absorption" — chelation of divalent cations (Al, Mg, Ca, Fe, Zn)
Sources
- Harrison's Principles of Internal Medicine, 21st Edition, pp. 4352, 4372
- Pharmacological knowledge synthesized from Katzung's Basic & Clinical Pharmacology, Goodman & Gilman's, and current clinical guidelines