Anatomy and physiology of GU system Symptomatology of urological diseases. Laboratory, instrumental and radiologic examination of the genitourinary system. Congenital anomalies of genitourinary system Trauma of genitourinary system Nonspecific infections of the genitourinary system Urinary stone disease.(Urolithiasis) Hydronephrosis. Tumors of genitourinary system. Tumors of kidneys, ureters, urinary bladder, urethra. BPH. Prostate cancer Emergency urology
anatomy physiology genitourinary system kidneys ureters bladder urethra
urological symptoms hematuria dysuria urinary retention incontinence renal colic
urolithiasis kidney stones pathophysiology types diagnosis treatment
congenital anomalies kidney ureter bladder horseshoe kidney duplex system
kidney anatomy nephron urinary tract diagram
urolithiasis hydronephrosis bladder tumor imaging
| Structure | Key Features |
|---|---|
| Kidneys | Retroperitoneal, T12–L3; right kidney lies slightly lower than left; each ~11×6×3 cm, ~150g |
| Renal vasculature | Renal artery branches: segmental → interlobar → arcuate → interlobular → afferent arterioles |
| Nephron | ~1 million per kidney; functional unit: glomerulus + tubule |
| Renal pelvis | Funnel-shaped; receives urine from major/minor calyces |
| Ureters | 25–30 cm; three narrowing points: PUJ, pelvic brim, UVJ (most common stone lodgment sites) |
| Structure | Key Features |
|---|---|
| Urinary bladder | Detrusor muscle (smooth); trigone between two ureteral orifices and internal urethral meatus |
| Urethra (male) | ~20 cm: prostatic → membranous (external sphincter) → bulbar → penile |
| Urethra (female) | ~4 cm; shorter = more prone to ascending UTI |
| Symptom | Definition / Significance |
|---|---|
| Hematuria | Blood in urine; gross vs. microscopic; initial (urethral), terminal (bladder neck/prostate), total (kidney/upper tract) |
| Dysuria | Painful/burning urination; UTI, urethritis, stones |
| Frequency | >8 voids/day; UTI, OAB, BPH |
| Urgency | Sudden compelling need to void |
| Nocturia | ≥2 voids/night; BPH, heart failure, DM |
| Urinary retention | Acute (painful) or chronic (painless); BPH, neurogenic, stricture |
| Incontinence | Stress (cough/sneeze), urge, overflow, functional |
| Hesitancy / weak stream / straining | Obstructive symptoms; BPH, stricture |
| Pneumaturia / fecaluria | Vesicovaginal or enterovesical fistula |
| Location | Source |
|---|---|
| Flank / costovertebral angle (CVA) pain | Kidney (pyelonephritis, obstruction, tumor) |
| Ureteral colic | Severe colicky flank → groin → genitalia; stone |
| Suprapubic pain | Bladder, cystitis |
| Perineal / rectal pain | Prostatitis, prostatic abscess |
| Scrotal pain | Epididymo-orchitis, torsion, tumor (often painless) |
Harrison's (p. 8396): "Hematuria associated with flank pain or ureteral colic is more characteristic of a lower urinary tract source, such as a stone or an obstructing lesion."
| Test | Purpose |
|---|---|
| Urinalysis (UA) | pH, SG, protein, glucose, ketones, blood, nitrites, leukocyte esterase |
| Urine microscopy | RBC casts (GN), WBC casts (pyelonephritis), granular casts (ATN), crystals |
| Urine culture & sensitivity | Gold standard for UTI |
| Urine cytology | Screening for urothelial carcinoma |
| 24-hour urine | Stone risk factors: Ca²⁺, oxalate, urate, citrate, Cr, volume |
| Serum creatinine / GFR | Renal function |
| PSA (total + free) | Prostate cancer screening; >4 ng/mL abnormal; free/total ratio <10% → malignancy |
| AFP, β-hCG, LDH | Testicular tumor markers |
| CBC, coagulation | Hematuria workup, pre-op |
| Procedure | Indication |
|---|---|
| Cystoscopy | Gold standard for bladder lesions, hematuria workup; allows biopsy |
| Ureteroscopy | Upper tract stones, tumors |
| Urodynamics | Evaluate bladder function; detrusor overactivity, sphincter competence |
| Transrectal US (TRUS) + biopsy | Prostate cancer diagnosis |
| Renal biopsy | Glomerular disease, transplant evaluation |
| Modality | Key Uses |
|---|---|
| Plain X-ray (KUB) | Radio-opaque stones (Ca oxalate, struvite, Ca phosphate); 90% of stones visible |
| Ultrasound | Hydronephrosis, renal masses, bladder residual, testicular pathology; first-line, no radiation |
| IVU / IVP | Ureteral anatomy, filling defects; largely replaced by CT |
| Non-contrast CT (NCCT/KUB) | Gold standard for urolithiasis; detects all stone types; also trauma |
| CT urography (CTU) | Hematuria workup; urothelial tumors, stones, masses |
| MRI | Soft tissue (prostate staging, renal masses); no radiation |
| Renal angiography | Renal artery stenosis, arteriovenous fistula, pre-nephrectomy |
| Radionuclide scan (DMSA, MAG3, DTPA) | Split renal function, obstruction, scarring |
| Retrograde pyelogram | Upper tract filling defects when CT inconclusive |
| Voiding cystourethrogram (VCUG) | Vesicoureteral reflux, urethral strictures |
| Anomaly | Features |
|---|---|
| Horseshoe kidney | Fused lower poles across midline (anterior to aorta); increased risk of stones, UPJ obstruction, Wilms tumor |
| Renal agenesis | Unilateral (compensatory hypertrophy of contralateral kidney); bilateral = Potter sequence (fatal) |
| Renal ectopia | Pelvic, iliac, thoracic; associated with UPJ obstruction |
| Duplex system | Duplex ureter; upper moiety ureter → ectopic insertion (obstructed); lower moiety → reflux (Weigert-Meyer rule) |
| UPJO (UPJ obstruction) | Most common congenital obstruction; causes hydronephrosis; Rx: pyeloplasty |
| Polycystic kidney disease | ADPKD (PKD1/PKD2 mutation) — adults; ARPKD — children; bilateral cysts |
| Multicystic dysplastic kidney | Non-functional; spontaneous involution; contralateral kidney at risk for VUR |
| Medullary sponge kidney | Dilated collecting tubules; nephrocalcinosis, stones, UTIs |
| Anomaly | Features |
|---|---|
| Vesicoureteral reflux (VUR) | Grade I–V; predisposes to pyelonephritis, renal scarring; Rx: prophylactic antibiotics or ureteral reimplantation |
| Ureterocele | Cystic dilation of intravesical ureter; orthotopic or ectopic |
| Retrocaval ureter (circumcaval) | Right ureter passes behind IVC; causes right hydronephrosis |
| Ectopic ureter | Insertion below bladder neck → incontinence in females (continuous dribbling with normal voiding) |
| Anomaly | Features |
|---|---|
| Bladder exstrophy | Failure of anterior bladder wall closure; exposed mucosa; associated with epispadias |
| Patent urachus | Umbilical fistula (urine from umbilicus), urachal sinus/cyst/diverticulum |
| Posterior urethral valves (PUV) | Most common obstructive uropathy in males; hypertrophied mucosal folds at verumontanum; causes bilateral hydronephrosis, bladder dysfunction; diagnosed on VCUG |
| Hypospadias | Ventral urethral meatus opening; associated with chordee; NEVER circumcise before repair |
| Epispadias | Dorsal urethral meatus; associated with bladder exstrophy |
| Cryptorchidism | Undescended testis; 30× increased risk of testicular cancer; orchidopexy by age 1 year |
| Phimosis / paraphimosis | Tight foreskin; paraphimosis is a urological emergency |
| Type | Definition |
|---|---|
| Uncomplicated UTI | Healthy, non-pregnant women; community-acquired |
| Complicated UTI | Anatomic/functional abnormality, instrumentation, male, pregnancy, immunosuppression, MDR organisms |
| Recurrent UTI | ≥2 episodes in 6 months or ≥3 in 12 months |
| Syndrome | Features | Management |
|---|---|---|
| Acute cystitis | Dysuria, frequency, urgency, suprapubic pain; no fever | TMP-SMX 3 days or nitrofurantoin 5 days or fosfomycin single dose |
| Acute pyelonephritis | Fever, rigors, CVA tenderness, nausea/vomiting; may have lower tract symptoms | Fluoroquinolone 7–14 days; IV if severe (ceftriaxone/aminoglycoside) |
| Urethritis | Dysuria, discharge; non-gonococcal (chlamydia) vs. gonococcal | Ceftriaxone + azithromycin/doxycycline |
| Prostatitis | See below | |
| Epididymo-orchitis | Scrotal pain/swelling, fever; <35yo → STI (chlamydia/gonorrhea); >35yo → gram-negative rods | Age-appropriate antibiotics |
| Category | Type | Features |
|---|---|---|
| I | Acute bacterial | Fever, dysuria, tender boggy prostate; Do NOT massage; IV antibiotics |
| II | Chronic bacterial | Recurrent UTIs, same organism; fluoroquinolone 4–6 weeks |
| III | Chronic pelvic pain syndrome (CPPS) | Most common; no infection; multimodal Rx |
| IV | Asymptomatic inflammatory | Incidental finding |
| Type | Frequency | Radiopacity | Risk Factors |
|---|---|---|---|
| Calcium oxalate | 70–80% | Radio-opaque | Hypercalciuria, hyperoxaluria, hypocitraturia |
| Calcium phosphate | 10% | Radio-opaque | RTA type I, hyperparathyroidism |
| Struvite (magnesium ammonium phosphate) | 10–15% | Radio-opaque | Urease-producing bacteria (Proteus, Klebsiella); forms staghorn calculi |
| Uric acid | 5–10% | Radiolucent | Hyperuricosuria, acidic urine, gout, myeloproliferative disorders |
| Cystine | 1–2% | Faintly opaque | Cystinuria (autosomal recessive) |

| Situation | Management |
|---|---|
| Stone <5 mm | Conservative; 95% pass spontaneously; NSAIDs (ketorolac) + α-blocker (tamsulosin = MET) |
| Stone 5–10 mm | MET with α-blocker; monitor |
| Stone >10 mm | Intervention likely needed |
| Infected obstructing stone | Urological emergency: urgent decompression (ureteral stent or percutaneous nephrostomy) + IV antibiotics |
| Stone with solitary kidney | Urgent intervention |
| Procedure | Indication |
|---|---|
| ESWL (extracorporeal shock wave lithotripsy) | Renal/proximal ureteral stones <2 cm; non-lower pole preferred |
| Ureteroscopy + laser lithotripsy (URS) | Ureteral stones, lower pole renal stones; any size |
| PCNL (percutaneous nephrolithotomy) | Large renal stones >2 cm, staghorn calculi, lower pole stones >1 cm |
| Open/laparoscopic surgery | Rare; complex anatomy, failed endourology |
| Level | Causes |
|---|---|
| Kidney / UPJ | Congenital UPJO, stone, tumor, fungus ball |
| Ureter | Stone, stricture, tumor, external compression (retroperitoneal fibrosis, tumor, lymphoma), megaureter |
| Bladder | Tumor, neurogenic bladder, diverticulum |
| Bladder outlet / urethra | BPH, PUV, urethral stricture, meatal stenosis |
| Extrinsic | Pregnancy, retroperitoneal fibrosis, endometriosis |
| Risk | PSA | Gleason | Stage |
|---|---|---|---|
| Low | <10 | ≤6 | ≤T2a |
| Intermediate | 10–20 | 7 | T2b |
| High | >20 | ≥8 | T2c–T3 |
| Type | Features | Markers |
|---|---|---|
| Seminoma (50%) | Homogeneous; radiosensitive; AFP normal; β-hCG may be ↑ | AFP (-), β-hCG (±), LDH (±) |
| Non-seminomatous GCT (NSGCT) | Embryonal, yolk sac, choriocarcinoma, teratoma | AFP (↑), β-hCG (↑), LDH (↑) |
| Emergency | Presentation | Key Action |
|---|---|---|
| Testicular torsion | Sudden severe scrotal pain, nausea/vomiting; absent cremasteric reflex; "bell-clapper" deformity; US shows absent blood flow | Surgical emergency: bilateral orchidopexy within 6 hours (salvage rate ~100%); >24h → orchiectomy |
| Acute urinary retention (AUR) | Inability to void, painful distended bladder, suprapubic dullness | Immediate urethral catheterization (or SPC if catheter fails); treat cause (BPH, constipation, anticholinergics) |
| Urosepsis | SIRS criteria + urological source (obstructed UTI); hypotension, tachycardia, fever | IV antibiotics + urgent drainage (ureteral stent or PCN) + resuscitation — mortality >30% if not drained |
| Renal/ureteral colic with infection | Fever + obstructing stone | Urgent decompression (PCN or stent) + broad-spectrum antibiotics |
| Penile fracture | Cracking sound, immediate detumescence, "eggplant deformity" | Immediate surgical repair |
| Paraphimosis | Retracted foreskin cannot be reduced; glans edema → ischemia | Manual reduction with ice; dorsal slit or circumcision if fails; true emergency |
| Priapism | Erection >4 hours; ischemic (low-flow, painful) vs. non-ischemic (high-flow, painless after perineal trauma) | Ischemic: aspirate + intracavernous phenylephrine; if fails → shunt surgery; non-ischemic: observation or embolization |
| Fournier's gangrene | Scrotal/perineal necrosis, crepitus, rapid spreading infection | ICU + aggressive debridement + IV antibiotics + hyperbaric O₂ |
| Obstructive uropathy / bilateral hydronephrosis | Anuria, rising creatinine, flank pain; bilateral obstruction → renal failure | Bilateral stenting or PCN; identify cause (pelvic malignancy, stones, fibrosis) |
| Gross hematuria with clot retention | Cannot void due to clots in bladder | Three-way catheter + continuous bladder irrigation (CBI); cystoscopy if persistent |
| Condition | Best First Test | Gold Standard |
|---|---|---|
| Urolithiasis | Ultrasound (or NCCT) | Non-contrast CT KUB |
| Bladder tumor | Ultrasound | Cystoscopy + TURBT |
| Renal mass | CT abdomen w/contrast | CT ± biopsy |
| Prostate cancer | PSA + DRE | TRUS biopsy / mpMRI fusion |
| Testicular tumor | Scrotal ultrasound | Radical inguinal orchiectomy |
| Hydronephrosis | Ultrasound | MAG-3 renogram (functional) |
| Urethral injury | RUG (retrograde urethrogram) | RUG |
| Bladder rupture | CT cystography | CT cystography |
| Vesicoureteral reflux | VCUG | VCUG |