i want to write a research [protocol for the topic " Diagnostic Performance of CT-like Images for Lumbar Pedicle Screw Planning and Spinal Canal Area Measurement: A Comparative Study with Conventional CT and MRI" help me out

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CT-like images MRI lumbar pedicle screw planning spinal canal

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CT-like images from MRI lumbar pedicle screw planning diagnostic accuracy research protocol 2024 2025

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PMID: 41893835

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PMID: 39763361

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https://www.nature.com/articles/s41598-025-05399-x

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pedicle screw placement accuracy measurement CT MRI agreement intraclass correlation

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Research Protocol

Diagnostic Performance of CT-like Images for Lumbar Pedicle Screw Planning and Spinal Canal Area Measurement: A Comparative Study with Conventional CT and MRI


1. BACKGROUND AND RATIONALE

Preoperative planning for lumbar spinal surgery - particularly pedicle screw fixation - has traditionally required computed tomography (CT) to evaluate osseous anatomy, determine pedicle dimensions, and select appropriate implant sizes. CT provides high-resolution bone detail that is indispensable for safe screw trajectory planning. However, most patients undergoing lumbar spine surgery already have MRI performed as the primary diagnostic modality to evaluate soft tissue, nerve roots, disc pathology, and spinal canal stenosis. Requiring both CT and MRI increases cost, prolongs the diagnostic pathway, and - most significantly - exposes patients to ionizing radiation from CT, raising cumulative radiation burden concerns, particularly in younger patients or those requiring repeat imaging.
Recent advances in MRI acquisition and post-processing have enabled generation of CT-like images directly from MRI data. Using gradient echo or ultrashort echo time (UTE) sequences, and increasingly with deep learning-based algorithms, MRI systems can now generate images that depict cortical and trabecular bone morphology with contrast characteristics resembling CT. These images, variously called synthetic CT (sCT), CT-like MRI, or virtual CT, simultaneously offer a myelography-like representation of the spinal canal - showing cerebrospinal fluid (CSF) as a bright signal around neural elements - potentially allowing spinal canal area (SCA) quantification that would otherwise require T2-weighted MRI sequences.
If CT-like images provide measurement accuracy equivalent to conventional CT for pedicle morphometry and equivalent to T2-weighted MRI for SCA measurement, they could replace the need for a separate CT examination in surgical planning. This would streamline preoperative workup to a single MRI visit, reduce radiation exposure, decrease cost, and potentially improve patient convenience without compromising surgical safety.
A 2026 study by Ogihara et al. (PMID: 41893835, Tomography) demonstrated that CT-like images showed excellent intraclass correlation (ICC) with CT for pedicle width (ICC: 0.968-0.985) and pedicle length (ICC: 0.922-0.966), with mean differences of ≤0.1 mm for width and ~1 mm for length - differences considered unlikely to affect screw size selection. Agreement with T2-weighted images for SCA was good to excellent (ICC: 0.766-0.945). A parallel review by Sankar et al. (PMID: 39763361, Asian Spine J, 2024) confirmed that CNN-based sCT generation methods, including U-Net and generative adversarial network architectures, enable clinically feasible bone visualization for pedicle screw planning, though challenges persist in the lumbar spine region.
The present protocol is designed to prospectively replicate and extend these findings in a new patient cohort, with attention to inter-reader variability, multi-level lumbar analysis, and correlation with intraoperative outcomes when surgery is performed.

2. OBJECTIVES

2.1 Primary Objective

To assess the measurement agreement of CT-like MRI images with conventional CT for pedicle width and pedicle length across lumbar vertebral levels L1-L5.

2.2 Secondary Objectives

  1. To assess agreement between CT-like images and T2-weighted MRI for spinal canal area (SCA) measurement at L1-S1.
  2. To determine inter-reader and intra-reader reliability for pedicle and SCA measurements on CT-like images.
  3. To identify patient or imaging factors associated with reduced agreement (e.g., obesity, metallic implants, degenerative changes, osteoporosis).
  4. To evaluate the feasibility of CT-like images as a standalone tool for comprehensive preoperative lumbar spine assessment without conventional CT.

2.3 Exploratory Objective

In patients who proceed to pedicle screw fixation surgery, to compare planned vs. actual screw trajectory and gauge the clinical adequacy of planning performed on CT-like images alone.

3. STUDY DESIGN

Design: Prospective, single-center (with option for multi-center extension), diagnostic accuracy/agreement study.
Study type: Comparative imaging study with blinded, independent measurement by two trained readers.
Reference standards:
  • Conventional CT: reference standard for pedicle width and pedicle length
  • T2-weighted MRI: reference standard for spinal canal area
Study duration: 24 months (12 months recruitment + 12 months data analysis and reporting)

4. STUDY POPULATION

4.1 Eligibility Criteria

Inclusion Criteria:
  • Adult patients ≥18 years of age
  • Clinical indication for lumbar spine MRI (degenerative disc disease, spinal stenosis, radiculopathy, pre-surgical evaluation)
  • Conventional lumbar CT also clinically indicated or performed within ≤4 weeks of MRI
  • Imaging to include at least L1-L5 vertebral levels on both modalities
  • Ability to provide written informed consent
Exclusion Criteria:
  • Previous lumbar spinal instrumentation (existing metallic implants causing susceptibility artifact)
  • MRI contraindications (pacemakers, non-MRI-compatible implants, severe claustrophobia)
  • CT or MRI of non-diagnostic quality (motion artifact, incomplete coverage of L1-S1)
  • Pathological fractures, spinal tumors, or infectious spondylodiscitis distorting normal bony anatomy
  • Interval between CT and MRI >4 weeks (to minimize anatomic change)
  • Known spinal deformity with Cobb angle >20° (scoliosis altering pedicle orientation significantly)

4.2 Sample Size

Basis: Agreement study using ICC.
Assumptions:
  • Expected ICC = 0.95 (based on Ogihara et al., 2026)
  • Null hypothesis ICC (ICC₀) = 0.80 (minimum acceptable agreement)
  • α = 0.05, power = 0.80
  • Two-sided test
Estimate: Approximately 48-60 patients providing 224-300 measurable vertebral levels is sufficient to estimate ICC with 95% confidence interval lower bound >0.80, consistent with prior literature. A target of 60 patients (providing approximately 270 analyzable vertebrae at L1-L5) is planned, accounting for ~10% exclusions due to image quality failure.

5. IMAGING PROTOCOLS

5.1 MRI Protocol

All MRI examinations will be performed on 1.5T or 3.0T MRI scanners.
Standard sequences (diagnostic):
  • Sagittal T1-weighted fast spin echo (FSE)
  • Sagittal T2-weighted FSE
  • Axial T2-weighted FSE at levels of interest
CT-like image acquisition sequence (added to standard protocol):
  • 3D gradient echo or ultrashort echo time (UTE) sequence optimized for bone contrast
  • Alternatively: Dixon-based 3D T1 sequence with fat-water separation for sCT reconstruction using a validated deep learning algorithm embedded in the MRI system (e.g., Siemens mDixon, Philips MR-only workflow)
  • Slice thickness: ≤1.5 mm
  • Field of view: covering L1 to S1
  • Reconstruction: isotropic 3D volume with multiplanar reformation capability
CT-like image generation: Post-processed from the acquired 3D sequence using the scanner's approved sCT algorithm or a validated external deep learning pipeline. Output: DICOM series with HU-like values enabling standard PACS viewing.

5.2 CT Protocol

  • Multi-detector CT (MDCT), minimum 64-slice
  • Tube voltage: 120 kVp (adjusted per patient weight)
  • Tube current: weight-adapted with automatic exposure control
  • Reconstruction: 1.0-1.5 mm axial slices, bone kernel (B60 or equivalent)
  • Field of view: L1-S1 inclusive
  • MPR: sagittal and coronal reformations at 1.5 mm thickness

6. MEASUREMENTS

6.1 Pedicle Measurements (CT-like images vs. CT)

Measurements will be performed on axial images at each lumbar level (L1-L5), bilaterally, by two independent readers.
Pedicle Width: Inner cortex-to-inner cortex transverse diameter of the pedicle at its narrowest point on the axial plane, measured perpendicular to the pedicle axis.
Pedicle Length: Distance from the posterior cortex of the vertebral body to the posterior cortex of the pedicle along the pedicle axis on the axial plane.
Measurements will be performed using electronic calipers on a PACS workstation. The readers will be blinded to the modality source during independent reading sessions (CT and CT-like images presented in randomized order).

6.2 Spinal Canal Area (T2-weighted MRI vs. CT-like images)

SCA will be measured at each level from L1 to S1 (6 levels), on axial images at the level of the intervertebral disc and the mid-vertebral body, bilaterally where applicable.
Method: Manual or semi-automatic region of interest (ROI) tracing of the inner bony spinal canal boundary on axial images. Area calculated automatically in mm².
Reference standard for SCA: T2-weighted axial MRI, where the CSF-cord/cauda equina interface is clearly defined.
CT-like image SCA: Measured using the CSF signal visible on CT myelography-like CT-like images.

7. READERS AND BLINDING

  • Two independent readers (Reader 1: musculoskeletal radiologist with ≥3 years post-fellowship experience; Reader 2: spine surgeon or radiology trainee with spine imaging experience ≥2 years)
  • Readers will be blinded to:
    • The modality being reviewed (CT vs. CT-like images presented in random sequence)
    • The other reader's measurements
    • Clinical outcome data
  • A second reading session will be performed by Reader 1 ≥4 weeks after the first to assess intra-reader reliability.
  • Readers will be trained on a practice dataset of 5 cases before study measurements begin.

8. STATISTICAL ANALYSIS

8.1 Primary Analysis - Agreement

  • Intraclass Correlation Coefficient (ICC): Two-way mixed effects model, absolute agreement type (ICC(2,1)) for each measurement (pedicle width, pedicle length, SCA), separately for each lumbar level and pooled across levels.
  • ICC interpretation: <0.50 poor, 0.50-0.74 moderate, 0.75-0.89 good, ≥0.90 excellent (Koo & Mae, 2016).
  • 95% confidence intervals reported for all ICC values.

8.2 Bland-Altman Analysis

  • Calculation of mean difference (bias) and 95% limits of agreement (LOA = mean difference ± 1.96 SD) for each measurement pair.
  • Proportional bias assessed by regression of difference vs. mean.
  • Clinically acceptable limits pre-specified as: pedicle width difference ≤1 mm, pedicle length difference ≤2 mm, SCA difference ≤10%.

8.3 Secondary Analyses

  • Inter-reader reliability: ICC between Reader 1 and Reader 2 on the same modality.
  • Intra-reader reliability: ICC between Reader 1 session 1 and session 2.
  • Subgroup analyses: Agreement stratified by vertebral level (L1-L5), patient BMI (≤25, 25-30, >30 kg/m²), and degree of degenerative change.
  • Equivalence testing: One-sided 95% confidence intervals to test whether mean differences are within pre-specified equivalence margins.

8.4 Software

SPSS v27 or R (packages: irr, BlandAltmanLeh). All tests two-sided; p <0.05 considered significant.

9. ETHICAL CONSIDERATIONS

  • Protocol submission to the Institutional Review Board (IRB)/Ethics Committee prior to any recruitment.
  • All participants will provide written informed consent before enrollment.
  • CT scans will only be included from those ordered as part of standard clinical care; no additional radiation exposure will be incurred by study participation.
  • Patient data de-identified prior to analysis; stored on a secure, password-protected server compliant with institutional data governance policies.
  • The study will be conducted in accordance with the Declaration of Helsinki (2013) and applicable national research regulations.
  • Registered prospectively on a recognized clinical trial registry (e.g., ClinicalTrials.gov or UMIN) prior to first enrollment.

10. STUDY LIMITATIONS (TO BE ACKNOWLEDGED)

  1. Retrospective component / mixed design: Including retrospectively collected paired datasets may introduce selection bias.
  2. Single center: Results may not generalize to different MRI hardware or sCT algorithms.
  3. CT-like algorithm variability: Multiple vendors use different sCT generation pipelines; findings may differ between systems.
  4. Gold standard for SCA: T2-weighted MRI is used as reference, but MRI SCA measurement itself has known variability in severe stenosis where the CSF signal is obliterated.
  5. No direct surgical outcome correlation unless the exploratory objective is achievable within the study timeframe.

11. TIMELINE

PhaseActivityDuration
Month 1-2IRB submission, protocol finalization, reader training2 months
Month 3-14Patient recruitment and imaging acquisition12 months
Month 15-16Blinded measurement by two readers2 months
Month 17Intra-reader repeat reading (Reader 1)1 month
Month 18-20Statistical analysis3 months
Month 21-24Manuscript preparation and submission4 months

12. REFERENCES

  1. Ogihara A, Fukuda T, Katsumi S, Ojiri H. Diagnostic Performance of CT-like Images for Lumbar Pedicle Screw Planning and Spinal Canal Area Measurement: A Comparative Study with Conventional CT and MRI. Tomography. 2026; doi:10.3390/tomography12030040 [PMID: 41893835]
  2. Sankar S, McDonnell JM, Darwish S, Butler JS. The potential role of synthetic computed tomography in spinal surgery: generation, applications, and implications for future clinical practice. Asian Spine J. 2024; doi:10.31616/asj.2024.0197 [PMID: 39763361]
  3. Altorfer FCS et al. Deep-learning reconstructed lumbar spine 3D MRI for surgical planning: pedicle screw placement and geometric measurements compared to CT. Eur Spine J. 2024. [PMID: 38472429]
  4. Scientific Reports (2025). Evaluation of MRI-based synthetic CT for lumbar degenerative disease: a comparison with CT. doi:10.1038/s41598-025-05399-x
  5. J Clin Med (2025). Generating a Synthetic Lumbar CT from a Standard MRI for Surgical Planning.
  6. Koo TK, Mae AY. A Guideline of Selecting and Reporting Intraclass Correlation Coefficients for Reliability Research. J Chiropr Med. 2016;15(2):155-163.
  7. Bland JM, Altman DG. Statistical methods for assessing agreement between two methods of clinical measurement. Lancet. 1986;1(8476):307-310.

APPENDIX A: Data Collection Form (Template)

FieldData
Patient ID
Age (years)
Sex
BMI (kg/m²)
MRI date
CT date
Interval (days)
MRI scanner (vendor/field strength)
CT scanner (vendor/slice count)
sCT algorithm used
L1 pedicle width R/L - CT
L1 pedicle width R/L - CT-like
L1 pedicle length R/L - CT
L1 pedicle length R/L - CT-like
... (repeat L2-L5)
L1 SCA - T2W MRI
L1 SCA - CT-like
... (repeat L2-S1)
Image quality score (1-3)
Reason for exclusion (if any)

This protocol is structured for submission to an IRB and for publication as a study protocol paper (e.g., in JMIR Research Protocols, BMJ Open, or Spine). Let me know if you need any section expanded - for example, a full statistical analysis plan, consent form language, STROBE/STARD checklist completion, or a budget/resource section.
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